Metagenome / Metatranscriptome Family F085361

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085361
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	51 residues
Representative Sequence	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCSCHSLQLKLFASGCD
Number of Associated Samples	56
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	40
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.099 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (67.568 % of family members)
Environment Ontology (ENVO)	Unclassified (73.874 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (87.387 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.26% β-sheet: 8.51% Coil/Unstructured: 87.23%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF14279	HNH_5	8.11
PF02511	Thy1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
All Organisms	root	All Organisms	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Viruses	superkingdom	All Organisms → Viruses	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Autographiviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Sednavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Synechococcus virus SRIP2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Synechococcus phage S-RIP2	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2 → Synechococcus phage S-RIP2	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300021964\|Ga0222719_10022269	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2 → Synechococcus phage S-RIP2	5046	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	74.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	18.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.70%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.80%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	74.77%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	18.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.70%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.80%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	67.57%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	18.92%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	5.41%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.70%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	1.80%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.80%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300012966	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018039	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018423	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental	Open in IMG/M
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022149	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (v3)	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023117	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG	Environmental	Open in IMG/M
3300023170	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG	Environmental	Open in IMG/M
3300023173	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG	Environmental	Open in IMG/M
3300023176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025751	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025828	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025840	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025853	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_101451093	3300000116	Marine	MLVLLRKDRKRGSSRGSVDVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIPTWGYVCSRP
DelMOSpr2010_102031633	3300000116	Marine	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQL
Ga0075478_101619913	3300006026	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCSCHSLQLKLFASGCD
Ga0075478_101728151	3300006026	Aqueous	MLVLLRKDRKRGSSRGSVDVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIP
Ga0075478_102372952	3300006026	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDNSCCSCHSLQLKLFASGCDGPS
Ga0070749_107771981	3300006802	Aqueous	MLDLLREDRKRGSSRGSVDGSSDVGCLDNSCCSCHSLQLKLFASGCDGPSSRRICDVGA
Ga0070754_102277243	3300006810	Aqueous	MLVLLREDRKRGSSRGSVDGSIDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIP
Ga0070754_102397661	3300006810	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVYGLQLKLFASG
Ga0070754_103187053	3300006810	Aqueous	MLVLLRENRKRGSSRGSVDVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIP
Ga0070754_103204671	3300006810	Aqueous	MLVLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQLKLFASG
Ga0070754_103603412	3300006810	Aqueous	MLVLLRENRKRGSSRGSIDGSIDVGCLDDPGCSCHSLQLKLFASGCDG
Ga0070754_104894222	3300006810	Aqueous	MLVLLREDRKRGSSRGSVDGSIDVGCLDNSCCSCHSLQLKLFAS
Ga0070754_105024302	3300006810	Aqueous	MLDLLREDRKRGSSRGSIDGSIDVGCLDDPGCSCHSLQLKLFASGCDG
Ga0070754_105132102	3300006810	Aqueous	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSGHSLQLKLFASGCDGPSSRRIGYIPT
Ga0070754_105161391	3300006810	Aqueous	MQVLLREDRERGSSSSSVDSASGVDCFDYSGCSIHSLQL
Ga0075481_100753971	3300006868	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIPAWGYVCSRP*
Ga0075481_102400591	3300006868	Aqueous	MLDLLRKDRKRGSSRGSFDVSGDVDCFDYSGCSCHSLQLKLFASGVDGPSSRRVCDVGAGGYVCSRP*
Ga0075481_102628481	3300006868	Aqueous	MLDLLRKDRKRGSSRGSVDGSSDVGCLDNSCCSCHSLQLKLFASGCDGPSSRRICDVGAG
Ga0075481_102835601	3300006868	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCSCHSLQLKLFAS
Ga0075481_103614381	3300006868	Aqueous	MLDLLREDRKRGSSRGSVDSSIDVGCLDNSCCSCHSLQLKLFA
Ga0075477_102891063	3300006869	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDNSCCSCHSLQLKLF
Ga0070750_102256721	3300006916	Aqueous	MLVLLREDRKRGSSRGSFDVSGDVDCFDNPGCSCHSLQLELFASGVDGPSSRRICDIGAGRYV
Ga0070746_102687731	3300006919	Aqueous	MLVLLREDRKRGSSRGSFDVSGDVDCFDNPGCSCHSLQLELFASGVDGPSSRRICDIGAGRYVCS
Ga0070746_103426372	3300006919	Aqueous	MLVLLRKDRKRGSSRGSVDGSSDVGCLDNSCCSCHSLQLKLFASGCDGPSSRRICDVGAGGY
Ga0070745_11317704	3300007344	Aqueous	MLVLLRKDRERGSSSSSVDSASGVDCFDYSGCSCHSLQLKLFASGCD
Ga0070752_12389661	3300007345	Aqueous	MLDLLRKDRKRGSSRGSFDVSGDVDCFDYSGCSCHSLQLKLFASGVDGPSSRRVCDVGAG
Ga0070753_11716651	3300007346	Aqueous	MLVLLRKDRKRGSSRGSVDVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIPT
Ga0099849_13121071	3300007539	Aqueous	MLVLLRKDRQRGSSRGSADVSGDVDCFDDPGCSCHSLQLKL
Ga0099849_13272291	3300007539	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVY
Ga0099849_13518412	3300007539	Aqueous	MLVLLREDRKRGSSRGSVDGSIDVGCLDDPGCSCHSLQLKLF
Ga0070751_13340102	3300007640	Aqueous	MLDLLREDRKRGSSRGSVDGSSDVGCLDNSGCPCHSLQLELFSSGVDGPSSRRICD
Ga0099850_12639192	3300007960	Aqueous	MLDLLREDRKRGSSRGSVDGSIDVGCLDKSCCSCHSLQLKLFASGCDGPSSRRICDVGAG
Ga0075480_104830291	3300008012	Aqueous	MLDLLRKDRKRGSSRGSFDVSGDVDCFDYSGCSCHSLQLKLFASGCDGPSSRRICDVGAGGYVC
Ga0129348_11034024	3300010296	Freshwater To Marine Saline Gradient	MLVLLREDRKRGSSRGSVDGSIDVGCFDDPGCSCHSLQLKLFA
Ga0129348_12639371	3300010296	Freshwater To Marine Saline Gradient	MLVLLRKDRQRGSSRGSADVSGDVDCFDDPGCSCHSLQLKLFASGCDGPSSRRIGYIPT
Ga0129345_10677195	3300010297	Freshwater To Marine Saline Gradient	MLDLLREDRKRGSSRGSVDSASDVGCLDNSGCPCHSLQLELFASGVDGPSSRRICDIGAGRYVCSRP*
Ga0129342_13166762	3300010299	Freshwater To Marine Saline Gradient	MLDLLRKDRKRGSSRGSVDGSIDVGCLDEPGCSCHSL
Ga0129351_12931072	3300010300	Freshwater To Marine Saline Gradient	MLVLLREDRKRGSSRGSADVSGDVDCFDDPGCSCHSLQLKLFASGCDGPS
Ga0129351_12975592	3300010300	Freshwater To Marine Saline Gradient	MLVLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQLKLFASGCDGPSS
Ga0129341_10522792	3300012966	Aqueous	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSIHSL
Ga0181577_103736864	3300017951	Salt Marsh	MLDLLRKDRERGSSSSSVDSASGVDCFDYSGCSGHSLQLKLFASGCDGPS
Ga0181577_106760512	3300017951	Salt Marsh	MLVLLREDRKRGSSSSSVDSASGVDCFDYSGCSGHSLQLKLFASGCDGPS
Ga0181583_103745651	3300017952	Salt Marsh	MLDLLREDRKRGSSRGSFDVSGDVDCFDDPGCSCHSLQLKLFA
Ga0181583_103878073	3300017952	Salt Marsh	MLDLLRKDRKRGSSRGSFDVSGDVNCFDDPGCSCHSLQLKLFASSCDGPSSRRIGYIPTWGYVCSR
Ga0181582_103411834	3300017958	Salt Marsh	MLDLLREDRKRGSSRGSFDVSGDVDCFDDPGCSCHSLQLKLFASGCDGPSSRRIGYIPTWGYV
Ga0181589_102618105	3300017964	Salt Marsh	MLVLLREDRKRGSSRGSFDVSGDVDCFDDPGCSCHSLQLKLFAS
Ga0181587_106310391	3300017968	Salt Marsh	MLVLLREYRKRGSSRGSFDVSGDVDCFDDPGCPCHSLQLKLFSSGVDGPSSRRICDI
Ga0181579_107286201	3300018039	Salt Marsh	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSCHSLQLKLFASGCDGPSSRRIGYIPTW
Ga0181592_110510681	3300018421	Salt Marsh	MLDLLREDRKRGSSRGSVDSASDVGCLDNSGCPCHSLQLKLFSSGVDGPSSRRICDIGAG
Ga0181592_110705372	3300018421	Salt Marsh	MLVLLRKYRKRGSSRSSFYIAGNVDGFDNPCCSGHSLQLKLF
Ga0181593_103965701	3300018423	Salt Marsh	MLDLLREDRKRGSSRGSFDVSGDVDCFDDSGCSCHSLQLKLFASGCDGPSSRRIGYIP
Ga0181591_107276972	3300018424	Salt Marsh	MLDLLREDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQLKLFASGCDGPSSRRICDVGAGGYVCSRP
Ga0181591_107703832	3300018424	Salt Marsh	MLALLRENRKRGSSRGSFDVSGDVDCFDDSGCSCHSLQLKLFASGCDGPSSRRIGYIPTWGYVCSR
Ga0213867_10758281	3300021335	Seawater	MLVLLREDRKRGSSRGSFDVSGDVDCFDDPGCSCHSLQLKLFASG
Ga0213866_100703281	3300021425	Seawater	MLDLLREDRKRGSSRGSVDSASDVGCLDNSGCPCHSLQLELFSSGVDGPSS
Ga0222719_100222691	3300021964	Estuarine Water	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQLKLFASGCDGPSS
Ga0222719_104687983	3300021964	Estuarine Water	MLALLREDRQRGSSRGSADVSGDVDCFDDPGCSCHSLQLKLFASGCDGPSSRRIGYIPT
Ga0222719_105586173	3300021964	Estuarine Water	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSIHSLQLKLFASGCDGPSS
Ga0196907_1084791	3300022149	Aqueous	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSIHSLQLKLFASGCDGPSSRRIGYI
Ga0196899_11100723	3300022187	Aqueous	MLVLLRKDRKRDSSRGSVDGSIDVGCLDNSCCPCHSLQLKLFSS
Ga0196899_11292233	3300022187	Aqueous	MLVLLRKDRKRGSSRGSVDGSIDVGCLDNSCCSCHSLQLKLFASGCD
Ga0196899_11609972	3300022187	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCSCHSLQLKLF
Ga0196899_11859331	3300022187	Aqueous	MLVLLRKDRERGSSSSSVDSASGVDCFDYSGCSCHSLQLKLFASGCDG
Ga0196899_12050921	3300022187	Aqueous	MLVLLREDRKRGSSRGSIDGSIDVGCLDDPGCSCHSLQLK
Ga0196901_11139904	3300022200	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDEPGCSCH
Ga0196901_11651661	3300022200	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDDPGCSCHSLQLKLFASGC
Ga0255751_102897884	3300023116	Salt Marsh	MLDLLREDRKRGSSRGSVDGSSDVGCLDNSGCPCHSLQLELFSSGVDGPSSR
Ga0255757_102201484	3300023117	Salt Marsh	MLDLLREDRKRGSSRGSVDSSSDVGCLDNSGCPCHSLQLELFSSGVDGPSSRRICD
Ga0255761_102665741	3300023170	Salt Marsh	MLDLLREDRKRGSSRGSFDVSGDVDCFDDPGCSCHSLQLKLFAS
Ga0255776_101981345	3300023173	Salt Marsh	MLVLLREDRKRGSSRGSVDGSIDVGCLDNSCCSCHSL
Ga0255776_103958333	3300023173	Salt Marsh	MLVLLREYRKRGSSRGSFDVSGDVDCFDDPGCSCHSLQLKLFAS
Ga0255772_101344796	3300023176	Salt Marsh	MLDLLREDRKRGSSRGSVDSSSDVGCLDNSGCPCHSLQLELFSSGVDGPSSRRICDIGAGRYVCSRP
Ga0255768_105147962	3300023180	Salt Marsh	MLGLLREDRKRGSSRGSFDVSRDVDCFDNPGCPCHSLQLELFSSGVDGPSS
Ga0255768_106239551	3300023180	Salt Marsh	MLDLLREDRKRGSSRGSVDGSSDVGCLDNSGCPCHSLQLKLFSSGVDGP
Ga0208149_10986852	3300025610	Aqueous	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSGHSLQLKLFASGCDGPSSRRIGYI
Ga0208898_10854164	3300025671	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVYGLQLKLFASGVDGPSSRRIGYIPTWGYVCSRP
Ga0208162_10140297	3300025674	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQLKLFASGCDGPSSRRVCDVGAGGYVCSRP
Ga0208162_10563741	3300025674	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDEPGCSCHSLQLKLFASGCDGPSSRRVCDVGAGGYVCSRP
Ga0208162_11146041	3300025674	Aqueous	MLDLLREDRKRGSSRGSVDGSIDVGCLDEPGCSCHSLQLKLFASSCDGPSSR
Ga0208162_11698962	3300025674	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDEPGCSCHSLQLKLFASSCDGPSSR
Ga0208162_11832362	3300025674	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDNSCCSCHSL
Ga0208019_10182311	3300025687	Aqueous	MLDLLREDRKRGSSRGSVDGSIDVGCLDKSCCSCHSLQLKLFA
Ga0208019_11590731	3300025687	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCSGHSLQLKLFASGCDGPSS
Ga0208019_11616842	3300025687	Aqueous	MLVLLRKDRKRGSSRGSVDGSIDVGCLDNSGCPCHSLQLKL
Ga0208150_11927912	3300025751	Aqueous	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSGHSLQLKLFASGCDGPSSRRIGYIPTW
Ga0208899_10742576	3300025759	Aqueous	MLVLLRKDRERGSSSSSVDSASGVDCFDYSGCSCHSLQLKLFASGCDGPSSRRI
Ga0208899_10793075	3300025759	Aqueous	MLVLLREDRKRGSSRGSFDVSGDVDCFDHSGCSVY
Ga0208547_11469353	3300025828	Aqueous	MLVLLREDRKRGSSRGSIDGSIDVGCLDDPGCSCHSLQLEL
Ga0208917_10673555	3300025840	Aqueous	MLVLLREDRKRGSSRGSVDSSSDVGCLDNSGCPCHSLQLELFASGVDGPSSRRICDVGAGGYVCSRP
Ga0208917_12220891	3300025840	Aqueous	MLGLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCH
Ga0208645_10382407	3300025853	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQLKLFASGC
Ga0208645_11030491	3300025853	Aqueous	MLVLLRENRKRGSSRGSIDGSIDVGCLDDPGCSCHSLQLKLFASGCDGP
Ga0208645_11239924	3300025853	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIPTWGYVCSRP
Ga0208645_11953523	3300025853	Aqueous	MLVLLRKDRKRGSSRSSVDGSSDVGCLDNSGCPCHSLQLELFSSGVDGPSSRRICDI
Ga0208645_12344351	3300025853	Aqueous	MLVLLRKNRKRGSSRGSVDGSIDVGCLDDPGCPCHSLQLKLFSSGVDGPSSRRICDIGAGCYV
Ga0208645_12401391	3300025853	Aqueous	MLDLLREDRKRGSSRGSIDGSIDVGCLDDPGCSCHSLQLKLFASGCDGP
Ga0208644_10936805	3300025889	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIPAWGYVCSRP
Ga0209635_108338781	3300027888	Marine Sediment	MLVLLRENRKRGSSRGSADVSGDVDCFDHSGCSVYGLQLKLFASGCDGPSSRRIGYIPTW
Ga0209536_1028763771	3300027917	Marine Sediment	MLDLLREDRKRGSSRGSFDVSGDVDCFDDPGCSCH
Ga0348335_024217_2708_2824	3300034374	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVYGLQL
Ga0348335_058472_2_145	3300034374	Aqueous	MLDLLREDRKRGSSRGSVDGSSDVGCLDNSGCPCHSLQLELFSSGVDG
Ga0348335_157224_506_610	3300034374	Aqueous	MLDLLREDRKRGSSRGSIDGSIDVGCLDDPGCSCH
Ga0348336_018503_3560_3712	3300034375	Aqueous	MLDLLRKDRKRGSSSSSVDSASGVDCFDYSGCSGHSLQLKLFASGCDGPSS
Ga0348336_101436_855_974	3300034375	Aqueous	MLDLLREDRKRGSSRGSVDGSIDVGCLDNSCCSCHSLQLK
Ga0348336_126401_674_805	3300034375	Aqueous	MLVLLREDRKRGSSRGSADVSGDVDCFDHSGCSVYGLQLKLFAS
Ga0348336_127346_692_799	3300034375	Aqueous	MLDLLRKDRKRGSSRGSVDGSIDVGCLDDPGCSCHS
Ga0348336_158753_532_660	3300034375	Aqueous	MLVLLRKDRKRGSSRGSVDGSIDVGCLDDPGCTCHSLQLKLFA
Ga0348336_166933_501_629	3300034375	Aqueous	MLVLLRENRKRGSSRGSIDGSIDVGCLDDPGCSCHSLQLKLFA
Ga0348336_185539_467_571	3300034375	Aqueous	MLVLLREDRKRGSSRGSIDGSIDVGCLDDPGCSCH
Ga0348336_214047_2_187	3300034375	Aqueous	MLDLLREDRKRGSSRGSVDGSSDVGCLDHSGCSCHSLQLKLFASGCDGPSSRRICDVGAGGY
Ga0348337_084187_912_1097	3300034418	Aqueous	MLVLLRKDRERGSSSSSVDSASGVDCFDYSGCSCHSLQLKLFASGCDGPSSRRIGYIPTWGY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085361

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences