Metagenome Family F085333

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085333
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	42 residues
Representative Sequence	SQGISPPTSKVTVEIEVRPHLTVGGEAGQSGSTGIGLNYNYDY
Number of Associated Samples	87
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.90 %
% of genes near scaffold ends (potentially truncated)	99.10 %
% of genes from short scaffolds (< 2000 bps)	90.99 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.153 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.838 % of family members)
Environment Ontology (ENVO)	Unclassified (45.045 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.351 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 33.80% Coil/Unstructured: 66.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01738	DLH	61.26
PF00501	AMP-binding	5.41
PF13193	AMP-binding_C	4.50
PF04357	TamB	3.60
PF12973	Cupin_7	2.70
PF13561	adh_short_C2	1.80
PF02452	PemK_toxin	1.80
PF01471	PG_binding_1	1.80
PF00202	Aminotran_3	0.90
PF13247	Fer4_11	0.90
PF14294	DUF4372	0.90
PF13701	DDE_Tnp_1_4	0.90
PF13378	MR_MLE_C	0.90
PF13683	rve_3	0.90
PF02518	HATPase_c	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	3.60
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	1.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.15 %
Unclassified	root	N/A	46.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.15 %
Unclassified	root	N/A	46.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.15 %
Unclassified	root	N/A	46.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.14 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.85 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	17.12 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.31 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.50 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.90 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.12 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.70 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.80 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.90 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.90 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.90 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.12 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.70 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1.80 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.90 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.90 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.90 %
unclassified Rhodobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.12 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.70 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1.80 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.90 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	0.90 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.90 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10484419	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300002245\|JGIcombinedJ26739_101383434	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300004092\|Ga0062389_102932537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	638	Open in IMG/M
3300004633\|Ga0066395_10143860	All Organisms → cellular organisms → Bacteria → Proteobacteria	1201	Open in IMG/M
3300005174\|Ga0066680_10101739	All Organisms → cellular organisms → Bacteria → Proteobacteria	1758	Open in IMG/M
3300005177\|Ga0066690_10973322	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005450\|Ga0066682_10476024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	792	Open in IMG/M
3300005602\|Ga0070762_10030096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2896	Open in IMG/M
3300006806\|Ga0079220_11988622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300007265\|Ga0099794_10125855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1292	Open in IMG/M
3300009012\|Ga0066710_102778854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	693	Open in IMG/M
3300009143\|Ga0099792_10659892	Not Available	673	Open in IMG/M
3300010159\|Ga0099796_10586266	Not Available	502	Open in IMG/M
3300010335\|Ga0134063_10567900	Not Available	574	Open in IMG/M
3300010358\|Ga0126370_11504129	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010359\|Ga0126376_11150473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300010359\|Ga0126376_12134293	Not Available	604	Open in IMG/M
3300010360\|Ga0126372_10757899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	956	Open in IMG/M
3300010360\|Ga0126372_12603352	Not Available	557	Open in IMG/M
3300010361\|Ga0126378_12230720	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300010366\|Ga0126379_12232156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300010376\|Ga0126381_102081578	Not Available	817	Open in IMG/M
3300010376\|Ga0126381_102240229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300010376\|Ga0126381_102542785	Not Available	733	Open in IMG/M
3300010376\|Ga0126381_103424426	Not Available	624	Open in IMG/M
3300010376\|Ga0126381_103844982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300010376\|Ga0126381_104449617	Not Available	541	Open in IMG/M
3300010379\|Ga0136449_100372733	All Organisms → cellular organisms → Bacteria	2550	Open in IMG/M
3300011269\|Ga0137392_11022728	Not Available	679	Open in IMG/M
3300012202\|Ga0137363_10257298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1420	Open in IMG/M
3300012202\|Ga0137363_10667151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	879	Open in IMG/M
3300012582\|Ga0137358_10647569	Not Available	707	Open in IMG/M
3300012929\|Ga0137404_11520417	Not Available	620	Open in IMG/M
3300016294\|Ga0182041_10705766	Not Available	895	Open in IMG/M
3300016294\|Ga0182041_10786998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	849	Open in IMG/M
3300016294\|Ga0182041_11517277	Not Available	617	Open in IMG/M
3300016294\|Ga0182041_11652079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300016294\|Ga0182041_12261242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300016319\|Ga0182033_10253807	All Organisms → cellular organisms → Bacteria → Proteobacteria	1430	Open in IMG/M
3300016341\|Ga0182035_10274122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1372	Open in IMG/M
3300016357\|Ga0182032_10154953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1699	Open in IMG/M
3300016357\|Ga0182032_11401449	Not Available	605	Open in IMG/M
3300016404\|Ga0182037_10335914	Not Available	1226	Open in IMG/M
3300016404\|Ga0182037_11961107	Not Available	525	Open in IMG/M
3300017970\|Ga0187783_11284998	Not Available	527	Open in IMG/M
3300017995\|Ga0187816_10080214	All Organisms → cellular organisms → Bacteria → Proteobacteria	1389	Open in IMG/M
3300018060\|Ga0187765_10214142	Not Available	1119	Open in IMG/M
3300018482\|Ga0066669_11873564	Not Available	557	Open in IMG/M
3300020579\|Ga0210407_10623134	Not Available	840	Open in IMG/M
3300020581\|Ga0210399_11590747	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300020582\|Ga0210395_10564175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	855	Open in IMG/M
3300021178\|Ga0210408_10732911	Not Available	777	Open in IMG/M
3300021181\|Ga0210388_10285449	Not Available	1450	Open in IMG/M
3300021358\|Ga0213873_10065016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	995	Open in IMG/M
3300021406\|Ga0210386_11263997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	622	Open in IMG/M
3300021407\|Ga0210383_10287838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1412	Open in IMG/M
3300024227\|Ga0228598_1077986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300025898\|Ga0207692_10216037	Not Available	1134	Open in IMG/M
3300025906\|Ga0207699_10214721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1310	Open in IMG/M
3300025916\|Ga0207663_10993163	Not Available	673	Open in IMG/M
3300026356\|Ga0257150_1063098	Not Available	556	Open in IMG/M
3300027655\|Ga0209388_1172602	Not Available	606	Open in IMG/M
3300027737\|Ga0209038_10049631	Not Available	1256	Open in IMG/M
3300027884\|Ga0209275_10039713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2214	Open in IMG/M
3300028047\|Ga0209526_10284878	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300031474\|Ga0170818_103191241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1729	Open in IMG/M
3300031543\|Ga0318516_10175941	Not Available	1232	Open in IMG/M
3300031543\|Ga0318516_10565414	Not Available	650	Open in IMG/M
3300031543\|Ga0318516_10795765	Not Available	534	Open in IMG/M
3300031544\|Ga0318534_10324166	Not Available	888	Open in IMG/M
3300031546\|Ga0318538_10082211	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300031546\|Ga0318538_10452697	Not Available	695	Open in IMG/M
3300031564\|Ga0318573_10141356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1259	Open in IMG/M
3300031573\|Ga0310915_10854189	Not Available	639	Open in IMG/M
3300031640\|Ga0318555_10392710	Not Available	752	Open in IMG/M
3300031640\|Ga0318555_10605547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300031681\|Ga0318572_10466611	Not Available	752	Open in IMG/M
3300031708\|Ga0310686_115797229	Not Available	514	Open in IMG/M
3300031718\|Ga0307474_11185369	Not Available	604	Open in IMG/M
3300031719\|Ga0306917_10236853	All Organisms → cellular organisms → Bacteria → Proteobacteria	1394	Open in IMG/M
3300031719\|Ga0306917_10499141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	955	Open in IMG/M
3300031719\|Ga0306917_11278516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300031724\|Ga0318500_10018241	All Organisms → cellular organisms → Bacteria	2634	Open in IMG/M
3300031724\|Ga0318500_10020969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2499	Open in IMG/M
3300031736\|Ga0318501_10239371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	958	Open in IMG/M
3300031747\|Ga0318502_10306763	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300031754\|Ga0307475_10553736	Not Available	922	Open in IMG/M
3300031778\|Ga0318498_10527296	Not Available	519	Open in IMG/M
3300031779\|Ga0318566_10157065	Not Available	1127	Open in IMG/M
3300031798\|Ga0318523_10464845	Not Available	627	Open in IMG/M
3300031823\|Ga0307478_10733025	Not Available	828	Open in IMG/M
3300031832\|Ga0318499_10252545	Not Available	684	Open in IMG/M
3300031880\|Ga0318544_10319189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300031890\|Ga0306925_10016011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7380	Open in IMG/M
3300031894\|Ga0318522_10348063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031941\|Ga0310912_10391223	Not Available	1082	Open in IMG/M
3300031942\|Ga0310916_11051938	Not Available	678	Open in IMG/M
3300031947\|Ga0310909_10063821	All Organisms → cellular organisms → Bacteria → Proteobacteria	2871	Open in IMG/M
3300031954\|Ga0306926_12811712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300031962\|Ga0307479_10670802	Not Available	1017	Open in IMG/M
3300031981\|Ga0318531_10457030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300032009\|Ga0318563_10272483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300032035\|Ga0310911_10154786	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300032035\|Ga0310911_10461800	Not Available	736	Open in IMG/M
3300032051\|Ga0318532_10019251	All Organisms → cellular organisms → Bacteria	2190	Open in IMG/M
3300032051\|Ga0318532_10133608	Not Available	880	Open in IMG/M
3300032060\|Ga0318505_10011346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	3219	Open in IMG/M
3300032063\|Ga0318504_10300397	Not Available	760	Open in IMG/M
3300032090\|Ga0318518_10010810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3760	Open in IMG/M
3300032090\|Ga0318518_10238758	Not Available	932	Open in IMG/M
3300032205\|Ga0307472_102429514	Not Available	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.20%
Host-Associated	Host-Associated	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.50%
Aquatic	Environmental → Aquatic	2.70%
Plants	Host-Associated → Plants	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.50%
Freshwater	Environmental → Aquatic → Freshwater	2.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.59%
Loam	Environmental → Terrestrial → Soil → Loam	8.11%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.11%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.70%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_104844192	3300001867	Forest Soil	TSKVTVEIEVMRHLTIGGEAGQSGSTGLGLNYNYDY*
JGIcombinedJ26739_1013834342	3300002245	Forest Soil	LSPPTSKVTVEIEVRPHLTIGGEAGQSGSTGIGLNYNYDY*
Ga0062389_1029325371	3300004092	Bog Forest Soil	VGVTQGVSPPTSKVTVEIELGHHVTVDTEAGQNGGTGIGLNYNYDY*
Ga0066395_101438601	3300004633	Tropical Forest Soil	SPPTSKVTVEIEVRPHLTVGGEAGQSGSTGLGVNYNYDY*
Ga0066680_101017393	3300005174	Soil	SQGLSPPTSKVTVEIELRLHLTVQGEAGQSGSTGIGLNYNYDY*
Ga0066690_109733222	3300005177	Soil	GLSPPTSKVTVEIEVRPHLTVGGEAGQSGSTGIGVNYNYDY*
Ga0066682_104760241	3300005450	Soil	GVSQGVSPPTSKVTVEIEVMRHLTIGGEAGQSGSTGIGLNYNYDY*
Ga0070762_100300961	3300005602	Soil	PTSKVTVEIEVRPHLTVQGEAGQSGSTGIGLNYNYDY*
Ga0079220_119886221	3300006806	Agricultural Soil	GLSPPTSKVIVEIELRRHLTVQGEAGQSGGTGIGLNYNYDY*
Ga0099794_101258553	3300007265	Vadose Zone Soil	TSKVTVEIEVRPHLTVQGEAGQSGSTGIGLNYNYDY*
Ga0066710_1027788542	3300009012	Grasslands Soil	GVSVGVSQGLSPPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0099792_106598921	3300009143	Vadose Zone Soil	GVSQGVSPPTSKVTVEIEVRPHLTIGGEAGQSGSTGIGLNYNYDY*
Ga0099796_105862661	3300010159	Vadose Zone Soil	PTSKVTVEIEVMRHLTIGGEAGQSGSTGLGVNYNYDY*
Ga0134063_105679001	3300010335	Grasslands Soil	SQGISPPTSKVTVEIEVRPHLTIGGEAGQSGSTGIGLNYNYDY*
Ga0126370_115041292	3300010358	Tropical Forest Soil	SPPTSKVTVTIDVWRHVTVQGEAGQSGSTGLGVNYNYDY*
Ga0126376_111504731	3300010359	Tropical Forest Soil	SVGVSQGVSPPTSKVTVEIELRPHLTIGGEAGQSGGTGIGLNYNYDY*
Ga0126376_121342931	3300010359	Tropical Forest Soil	KITVEIEIRPHLTVGGEAGQSGSTGIGINYNYDY*
Ga0126372_107578992	3300010360	Tropical Forest Soil	SVGVSQGLSPPTSKVTVTIDVWRHVTVQGEAGQSGSTGLGVNYNYDY*
Ga0126372_126033521	3300010360	Tropical Forest Soil	GVSQGISPPTSKVTVEIQVLPHLTVGGEAGQSGSTGIGLNYNYDY*
Ga0126378_122307201	3300010361	Tropical Forest Soil	KVTVTIDVWRHVTVQGEAGQSGSTGLGVNYNYDY*
Ga0126379_122321561	3300010366	Tropical Forest Soil	SQGVSPPTSKVTVEIELRPHLTIGGEAGQSGGTGIGLNYNYDY*
Ga0126381_1020815782	3300010376	Tropical Forest Soil	IAPGVSVGVTQGVSPPTSKVTVEVDLGHHLTLDTESGGQNIGTGIGLNYSFDY*
Ga0126381_1022402291	3300010376	Tropical Forest Soil	PPTSKVTVEIEVRPHLTVQGEAGQSGSTGIGLNYNYDY*
Ga0126381_1025427852	3300010376	Tropical Forest Soil	PTSKITVEVQVRPHLTVGGEAGQAGGTGLGINYNYDY*
Ga0126381_1034244262	3300010376	Tropical Forest Soil	VSPPTSTVTVEIQLGPHLTVGTSAGQNGGTGIGLNYNYNY*
Ga0126381_1038449822	3300010376	Tropical Forest Soil	SQGVSPPTSKVTVEIEVRPHLTIGGEAGQSGSTGIGLNYNYDY*
Ga0126381_1044496171	3300010376	Tropical Forest Soil	RGVSIGVTQGVSPPTSRVTVEIQLGNHLTIDTQAGQNSGTGVGINYNYDY*
Ga0136449_1003727331	3300010379	Peatlands Soil	GKYVMPGVSVGVTQGVSPPTSKVTVEIELGHHVTVDTEAGQNGGTGIGLNYNHDY*
Ga0137392_110227281	3300011269	Vadose Zone Soil	GVSQGLSPPTSKVTVEIEVRPHLTVQGEAGQSGSTGIGLNYNYDY*
Ga0137363_102572983	3300012202	Vadose Zone Soil	GVSQGISPPTSKVTVEIELRPHLTIGGEAGQSGSTGIGVNYNYDY*
Ga0137363_106671512	3300012202	Vadose Zone Soil	SPPTSKVTVEIEVRPHLTIGGEAGQSGSTGLGLNYNYDY*
Ga0137358_106475691	3300012582	Vadose Zone Soil	TSKVTVEIEVMRHLTIGGEAGQSGSTGLGVNYNYDY*
Ga0137404_115204171	3300012929	Vadose Zone Soil	SKVTVEIEVRPHLTVGGEAGQSGSTGIGLNYNYDY*
Ga0182041_107057662	3300016294	Soil	TSKVTVEIEVGHHVTVDTEAGQNGGTGIGLNYNYDY
Ga0182041_107869981	3300016294	Soil	PPTSKVTVQIEVRPHLTVGGEAGQSGSTGLGVNYNYDY
Ga0182041_115172772	3300016294	Soil	ISPPTSKVTVEIQVLPHVTVGGEAGQSGSTGIGVNWNYDY
Ga0182041_116520792	3300016294	Soil	GVSQGISPPTSKVTVEIQVLPHVTVGGEAGQSGNTGIGVNYNHDY
Ga0182041_122612422	3300016294	Soil	SPPTSKVTVQIEVRPHLTVGGEAGQSGSTGLGVNYNYDY
Ga0182033_102538073	3300016319	Soil	SVGVSQGVSPPTSKVTVQIEVRPHLTVGGEAGQSGSTGLGVNYNYDY
Ga0182035_102741223	3300016341	Soil	PTSKVTVEVEVRPHLTVGGEAGQSGSTGLGVNWSYDY
Ga0182032_101549533	3300016357	Soil	PPTSKITVEIELRPHLTVGGEAGQSGSTGVGINYNYDY
Ga0182032_114014491	3300016357	Soil	SQGISPPTSKVTVEIEVRPHLTVGGEAGQSGSTGIGLNYNYDY
Ga0182037_103359141	3300016404	Soil	SQGISPPTSKITVEVEVRPHLTVGGEAGQSGSTGIGLNWNYNY
Ga0182037_119611071	3300016404	Soil	GVSVGVSQVISPPTSKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0187783_112849982	3300017970	Tropical Peatland	SKVTVEIEVRPHLTVGGEAGQSGSTGIGVNYNYDH
Ga0187816_100802141	3300017995	Freshwater Sediment	QGVSPPTSKVTVEVDLGHHVTVDTETGGQNVGTGIGLNYSFDY
Ga0187765_102141422	3300018060	Tropical Peatland	KYLMPGVSVGVTQGVSPPTSKVTVEIELGHHVTVDTEAGQNGGTGVGLNYNYDY
Ga0066669_118735641	3300018482	Grasslands Soil	TSKVTVEIEVMRHLTIGGEAGQSGSTGLGVNYNYDY
Ga0210407_106231342	3300020579	Soil	VSVGVSQGLSPPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0210399_115907471	3300020581	Soil	LSPPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0210395_105641753	3300020582	Soil	IGVSQGVSPPTSKVTVEVDLGHHVTVDTEAGQNNGTGIGLNYNYDY
Ga0210408_107329112	3300021178	Soil	PPTSKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0210388_102854492	3300021181	Soil	VGVSQGLSPPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0213873_100650162	3300021358	Rhizosphere	VSQGVSPPTSKVTVQIEVRPHLTVGGEAGQSGSTGIGLNYNYDY
Ga0210386_112639971	3300021406	Soil	SPPTSKVTVEVDLGHHVTVDTEAGQNNGTGIGLNYNYDY
Ga0210383_102878381	3300021407	Soil	SQGISPPTSKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0228598_10779862	3300024227	Rhizosphere	VSQGISPPTSKVTVEIEVRPHLTVGGEAGQSGSTGIGLNYNYDY
Ga0207692_102160371	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	GVPPPTSKVTVEIEVRPHLTIGGEAGQSGSTGIGLNYNYDY
Ga0207699_102147211	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PPTSKVTVEIEVRPHLTVGGEAGQSGSTGIGLNYNYDY
Ga0207663_109931631	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	SPPTSKITVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0257150_10630982	3300026356	Soil	PTSKITVEIEVRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0209388_11726022	3300027655	Vadose Zone Soil	SVGVTQGISPPTSKVTVEVEVRPHLTVGGEAGQSGSTGIGLNYNYDY
Ga0209038_100496311	3300027737	Bog Forest Soil	GVSVGVTQGVSPPTSKVTVEIEVGHHVTVDTEAGQNGGTGIGLNYNYDY
Ga0209275_100397131	3300027884	Soil	PTSKVTVEIEVRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0209526_102848783	3300028047	Forest Soil	GVSQGLSPPTSKVTVEIEVRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0170818_1031912411	3300031474	Forest Soil	PPTSKVTVEIEVRPHLTVGGEGGQSGSTGLGLNYNYDY
Ga0318516_101759413	3300031543	Soil	GVSVGVSQGISPPTSKVTVEIQVLPHVTVGGEAGQSGNTGIGVNYNHDY
Ga0318516_105654142	3300031543	Soil	PGVSVGVSQGISPPTSKITVEVEVRPHLTVGGEAGQSGSTGIGLNWNYNY
Ga0318516_107957651	3300031543	Soil	SVGVSQGLSPPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0318534_103241661	3300031544	Soil	GVSQGLSPPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0318538_100822111	3300031546	Soil	SQGISPPTSKITVEIEIRPHLTVGGEAGQSGSTGIGINYNYDY
Ga0318538_104526972	3300031546	Soil	ISPPTSKVTVEIQVLPHVTVGGEAGQSGSTGLGVNWNYDY
Ga0318573_101413561	3300031564	Soil	SVGVSQGISPPTSKVTVEIQVLPHVTVGGEAGQSGSTGLGVNWNYDY
Ga0310915_108541892	3300031573	Soil	VGVSQGISPPTSKVTVEIQVLPHVTVGGEAGQSGNTGIGVNYNYDY
Ga0318555_103927101	3300031640	Soil	QGISPPTSKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0318555_106055472	3300031640	Soil	VSPPTSKVTVQIEVRPHLTVGGEAGQSGSTGLGVNYNYDY
Ga0318572_104666112	3300031681	Soil	PTSKVTVEVEVRPHLTVGGEAGQSGSTGVGVNWNYDY
Ga0310686_1157972292	3300031708	Soil	VGVTQGVSPPTSKVTVEIDVGHHVTVDTEAGQNGGTGIGLNYKYDY
Ga0307474_111853692	3300031718	Hardwood Forest Soil	PTSKVTVEIEVRPHLTVQGEAGQSGSTGIGVNYNYDY
Ga0306917_102368533	3300031719	Soil	SKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0306917_104991411	3300031719	Soil	PTSKVAVEVEVRPHLTVGGEAGQSGSTGLGVNWSYDY
Ga0306917_112785162	3300031719	Soil	SKVTVQIEVRPHLTVGGEAGQSGSTGLGVNYNYDY
Ga0318500_100182413	3300031724	Soil	PPTSKITVEIEIRPHLTVGGEAGQSGSTGIGINYNYDY
Ga0318500_100209691	3300031724	Soil	QGISPPTSKVTVEIQVLPHVTVGGEAGQSGSTGIGLNYNYDY
Ga0318501_102393711	3300031736	Soil	QGVSPPTSKVTVQIEVRPHLTVGGEAGQSGSTGLGVNYNYDY
Ga0318502_103067631	3300031747	Soil	VGVSQGISPPTSKVTVEIQVLPHVTVGGEAGQSGNTGIGVNYNHDY
Ga0307475_105537362	3300031754	Hardwood Forest Soil	GISPPTSKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0318498_105272962	3300031778	Soil	IGVSQGLSPPTSKVTVEIELRRHLTVQGEAGQSGSTGIGLNYNYDY
Ga0318566_101570651	3300031779	Soil	ALTAVPLAAPPTSKITVEIQVRPHLTVGGEAGQGGGTGLGINWNYDY
Ga0318523_104648452	3300031798	Soil	ASVRPFDGQGISPPTSKVTVEIEVGPHLTIGGEAGQSGSTGLGVNWNYDY
Ga0307478_107330251	3300031823	Hardwood Forest Soil	VSQGISPPTSKVTVEVEVRPHLTVGGEAGQSGSTGVGINYNYDY
Ga0318499_102525451	3300031832	Soil	PGVSVGVSQGISPPTSKVTVEIQVLPHLTVGGEAGQSGSTGIGLNYNYDY
Ga0318544_103191892	3300031880	Soil	CVSQGISPPTSKVTVEIQVLPHVTVGGEAGQSGSTGIGVNYNYDY
Ga0306925_100160119	3300031890	Soil	APGVSIGVSQGLSPPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0318522_103480631	3300031894	Soil	SPPTSKVTVEIQVLPHVTVGGEAGQSGSTGIGLNYNYDY
Ga0310912_103912232	3300031941	Soil	VTQGVSPPTSKVTVEIEVGHHVTVDTEAGQNGGTGIGLNYNYDY
Ga0310916_110519381	3300031942	Soil	VSVGVSQGISPPTSKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0310909_100638211	3300031947	Soil	ISPPTSKVTVEVEVRPHLTVGGEAGQSGSTGLGVNWSYDY
Ga0306926_128117122	3300031954	Soil	TSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0307479_106708021	3300031962	Hardwood Forest Soil	PPTSKVTVEIELRPHLTVQGEAGQSGSTGIGLNYNYDY
Ga0318531_104570301	3300031981	Soil	VSQGISPPTSKVTVEIQVLPHVTVGGEAGQSGNTGIGVNYNHDY
Ga0318563_102724831	3300032009	Soil	YIAPGVSIGVSQGISPPTSKVTVEIELRPHLTVGGEAGQSGSTGIGLNYNYDY
Ga0310911_101547861	3300032035	Soil	ISPPTSKITVEIEIRPHLTVGGEAGQSGSTGIGINYNYDY
Ga0310911_104618001	3300032035	Soil	APGVSIGVSQGLSPPTSKVTVEIELRRHLTVQGEAGQSGSTGIGLNYNYDY
Ga0318532_100192511	3300032051	Soil	GVSVGVSQGISPPTSKITVEIEIRPHLTVGGEAGQSGSTGIGINYNYDY
Ga0318532_101336082	3300032051	Soil	SVGVSQGISPPTSKITVEVQVRPHLTVGGEVGQGGGTGLGINYNYDY
Ga0318505_100113461	3300032060	Soil	VGVSQGVSPPTSKVTVQIEVRPHLTVGGEAGQSGSTGLGVNYNYDY
Ga0318504_103003971	3300032063	Soil	GISPPTSKVTVEIQVLPHVTVGGEAGQSGNTGIGVNYNHDY
Ga0318518_100108107	3300032090	Soil	SQGISPPTSKVTVEIQVLPHVTVGGEAGQSGSTGIGLNYNYDY
Ga0318518_102387582	3300032090	Soil	LSAVPLAPPPTSKVTVEIELRRHLTVQGEAGQSGSTGIGLNYNYDY
Ga0307472_1024295141	3300032205	Hardwood Forest Soil	GVSPPTSKVTVEIEVRPHLTIGGEAGQSGSTGIGLNYNYDY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085333

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences