Metagenome / Metatranscriptome Family F085325

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085325
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	54 residues
Representative Sequence	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMKMADSMKMMAPADTTH
Number of Associated Samples	96
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.59 %
% of genes near scaffold ends (potentially truncated)	55.86 %
% of genes from short scaffolds (< 2000 bps)	77.48 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.721 % of family members)
Environment Ontology (ENVO)	Unclassified (31.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.937 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01074	Glyco_hydro_38N	11.71
PF01073	3Beta_HSD	9.01
PF00311	PEPcase	3.60
PF07748	Glyco_hydro_38C	2.70
PF01145	Band_7	1.80
PF01370	Epimerase	1.80
PF08669	GCV_T_C	0.90
PF13419	HAD_2	0.90
PF01565	FAD_binding_4	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0383	Alpha-mannosidase	Carbohydrate transport and metabolism [G]	14.41
COG2352	Phosphoenolpyruvate carboxylase	Energy production and conversion [C]	3.60

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	50.45 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	50.45 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	49.55 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium 13_1_40CM_66_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	45.05 %
Unclassified	root	N/A	4.50 %
Gemmatimonadetes bacterium 13_1_40CM_4_69_5	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_5	2.70 %
Gemmatimonadetes bacterium 13_1_40CM_3_65_8	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_3_65_8	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10271689	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	836	Open in IMG/M
3300001686\|C688J18823_11024359	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	523	Open in IMG/M
3300002558\|JGI25385J37094_10037601	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300002562\|JGI25382J37095_10097664	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1045	Open in IMG/M
3300002562\|JGI25382J37095_10271553	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	510	Open in IMG/M
3300002908\|JGI25382J43887_10190341	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	997	Open in IMG/M
3300002908\|JGI25382J43887_10434643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	555	Open in IMG/M
3300003319\|soilL2_10025171	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1000	Open in IMG/M
3300003324\|soilH2_10011161	All Organisms → cellular organisms → Bacteria	3660	Open in IMG/M
3300003324\|soilH2_10272142	All Organisms → cellular organisms → Bacteria	3001	Open in IMG/M
3300004058\|Ga0055498_10010738	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1195	Open in IMG/M
3300004114\|Ga0062593_100007008	All Organisms → cellular organisms → Bacteria	4893	Open in IMG/M
3300005093\|Ga0062594_101673033	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005166\|Ga0066674_10059928	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300005167\|Ga0066672_10809406	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	589	Open in IMG/M
3300005518\|Ga0070699_100213796	All Organisms → cellular organisms → Bacteria	1717	Open in IMG/M
3300005536\|Ga0070697_102082689	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	508	Open in IMG/M
3300005545\|Ga0070695_100083802	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M
3300005558\|Ga0066698_10260606	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005568\|Ga0066703_10799753	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	539	Open in IMG/M
3300005598\|Ga0066706_10521418	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	946	Open in IMG/M
3300006034\|Ga0066656_10014286	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4098	Open in IMG/M
3300006034\|Ga0066656_10376340	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	918	Open in IMG/M
3300006844\|Ga0075428_100011280	All Organisms → cellular organisms → Bacteria	9941	Open in IMG/M
3300006844\|Ga0075428_100049729	All Organisms → cellular organisms → Bacteria	4600	Open in IMG/M
3300006847\|Ga0075431_101154512	Not Available	738	Open in IMG/M
3300006853\|Ga0075420_100480462	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300006865\|Ga0073934_10590430	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300006903\|Ga0075426_11546427	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	504	Open in IMG/M
3300006918\|Ga0079216_11338376	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300007004\|Ga0079218_10368758	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300007788\|Ga0099795_10499199	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300009156\|Ga0111538_11288495	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	923	Open in IMG/M
3300009678\|Ga0105252_10006616	All Organisms → cellular organisms → Bacteria	4206	Open in IMG/M
3300009678\|Ga0105252_10008658	All Organisms → cellular organisms → Bacteria	3644	Open in IMG/M
3300009804\|Ga0105063_1020886	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_5	780	Open in IMG/M
3300009820\|Ga0105085_1052714	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	740	Open in IMG/M
3300009821\|Ga0105064_1138772	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300009822\|Ga0105066_1166609	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300010304\|Ga0134088_10268022	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	823	Open in IMG/M
3300010323\|Ga0134086_10219648	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	715	Open in IMG/M
3300010333\|Ga0134080_10345132	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	677	Open in IMG/M
3300011403\|Ga0137313_1000669	All Organisms → cellular organisms → Bacteria	10270	Open in IMG/M
3300011430\|Ga0137423_1014575	All Organisms → cellular organisms → Bacteria	2453	Open in IMG/M
3300011445\|Ga0137427_10157130	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300012175\|Ga0137321_1007740	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300012198\|Ga0137364_10229447	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_5	1367	Open in IMG/M
3300012200\|Ga0137382_11077971	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	574	Open in IMG/M
3300012202\|Ga0137363_11241897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	632	Open in IMG/M
3300012203\|Ga0137399_11311547	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	608	Open in IMG/M
3300012204\|Ga0137374_10007427	All Organisms → cellular organisms → Bacteria	13052	Open in IMG/M
3300012210\|Ga0137378_10005291	All Organisms → cellular organisms → Bacteria	11188	Open in IMG/M
3300012349\|Ga0137387_10565524	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	825	Open in IMG/M
3300012349\|Ga0137387_10837103	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300012351\|Ga0137386_10078791	All Organisms → cellular organisms → Bacteria	2307	Open in IMG/M
3300012353\|Ga0137367_10289151	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1174	Open in IMG/M
3300012356\|Ga0137371_10846473	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	696	Open in IMG/M
3300012360\|Ga0137375_10013451	All Organisms → cellular organisms → Bacteria	9658	Open in IMG/M
3300012362\|Ga0137361_10659221	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	957	Open in IMG/M
3300012685\|Ga0137397_10445934	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	964	Open in IMG/M
3300012896\|Ga0157303_10013023	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300012922\|Ga0137394_10883381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	747	Open in IMG/M
3300012927\|Ga0137416_10304042	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300012927\|Ga0137416_10826650	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	820	Open in IMG/M
3300012930\|Ga0137407_12056556	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300014154\|Ga0134075_10052988	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300014154\|Ga0134075_10154041	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	982	Open in IMG/M
3300014255\|Ga0075320_1123584	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300015054\|Ga0137420_1041349	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	513	Open in IMG/M
3300015200\|Ga0173480_11002825	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	550	Open in IMG/M
3300015372\|Ga0132256_101007320	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	948	Open in IMG/M
3300017997\|Ga0184610_1006841	All Organisms → cellular organisms → Bacteria	2746	Open in IMG/M
3300018031\|Ga0184634_10394457	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300018056\|Ga0184623_10056069	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1804	Open in IMG/M
3300018084\|Ga0184629_10175945	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1097	Open in IMG/M
3300018084\|Ga0184629_10406494	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300018431\|Ga0066655_10231629	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1166	Open in IMG/M
3300018431\|Ga0066655_10976423	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	584	Open in IMG/M
3300018433\|Ga0066667_10441175	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1061	Open in IMG/M
3300019879\|Ga0193723_1009932	Not Available	3072	Open in IMG/M
3300020067\|Ga0180109_1408937	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300021073\|Ga0210378_10049091	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300024325\|Ga0247678_1055473	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300024330\|Ga0137417_1279799	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1076	Open in IMG/M
3300025310\|Ga0209172_10340337	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	732	Open in IMG/M
3300025918\|Ga0207662_10597612	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	767	Open in IMG/M
3300026285\|Ga0209438_1192944	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	541	Open in IMG/M
3300026310\|Ga0209239_1233619	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	639	Open in IMG/M
3300026323\|Ga0209472_1090757	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300026324\|Ga0209470_1020117	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3631	Open in IMG/M
3300026343\|Ga0209159_1124397	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1080	Open in IMG/M
3300026538\|Ga0209056_10680023	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	520	Open in IMG/M
3300027266\|Ga0209215_1001434	All Organisms → cellular organisms → Bacteria	2433	Open in IMG/M
3300027513\|Ga0208685_1039155	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1034	Open in IMG/M
3300027573\|Ga0208454_1004185	All Organisms → cellular organisms → Bacteria	4290	Open in IMG/M
3300027573\|Ga0208454_1006374	All Organisms → cellular organisms → Bacteria	3213	Open in IMG/M
3300027573\|Ga0208454_1087228	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300027655\|Ga0209388_1178875	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	593	Open in IMG/M
3300027655\|Ga0209388_1197518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	558	Open in IMG/M
3300027907\|Ga0207428_10794454	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	673	Open in IMG/M
3300027909\|Ga0209382_11596347	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_4_69_5	645	Open in IMG/M
3300031199\|Ga0307495_10014146	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300031226\|Ga0307497_10204395	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300031720\|Ga0307469_10556626	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_66_11	1017	Open in IMG/M
3300031854\|Ga0310904_10978923	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300032180\|Ga0307471_102546107	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300033407\|Ga0214472_10222852	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
3300034177\|Ga0364932_0039507	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_3_65_8	1772	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.99%
Host-Associated	Host-Associated	9.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.97%
Aquatic	Environmental → Aquatic	18.02%
Plants	Host-Associated → Plants	9.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.07%
Sediment	Environmental → Aquatic → Sediment	13.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.01%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.80%
Marine	Environmental → Aquatic → Marine	0.90%
Floodplain	Environmental → Terrestrial → Floodplain	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.11%
Loam	Environmental → Terrestrial → Soil → Loam	7.21%
Sand	Environmental → Terrestrial → Soil → Sand	3.60%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.80%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.11%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.81%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	9.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.01%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.11%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.50%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.60%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.70%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.80%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.80%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_102716891	3300001661	Forest Soil	MKRIALAVAVVVMAAGACTKAKNSNTAADSIRADSMRMADSMK
C688J18823_110243591	3300001686	Soil	MKRIALAVAVVVMAAGACKKAQNSNAADSTRADSMRMADSMKMAPGDTTHMMGDS
JGI25385J37094_100376011	3300002558	Grasslands Soil	MKRIXLAVALVVMAAGACKKAEQSNTATPPADSMKMADSMKMMAPADTTHHMAADTMKA
JGI25382J37095_100976642	3300002562	Grasslands Soil	MKRIALAVAVVVMAAGACKKAQNSNAGGNTRADSMRMADSMKMMAP
JGI25382J37095_102715531	3300002562	Grasslands Soil	MKRIALAVAVVVMAAGACKKAQNSNADTMRADSMRMADSM
JGI25382J43887_101903411	3300002908	Grasslands Soil	MKRIALVVALVVMAAGACKKAQQGGSMAADSARMADSMKMADSMKM
JGI25382J43887_104346432	3300002908	Grasslands Soil	MKRIALAVAVVVMAAGACKKAQNSNADTMRADSMRMADSMKMMAPAD
soilL2_100251712	3300003319	Sugarcane Root And Bulk Soil	MKRIALAVALVVMAAGACKKAEDRGTAADSTRADSMMMSDSMKADTTH
soilH2_100111613	3300003324	Sugarcane Root And Bulk Soil	MKRIALAVALVVMAAGACKKAEDRGTAADSTRADSMMMSDSMKADTTHHMAPDTTKARRP
soilH2_102721422	3300003324	Sugarcane Root And Bulk Soil	MKRIALAVALVVMAAGACKKAEDRGMSADSTRADSSMMSDSMKMDTTHQMAPDTTKARRP
Ga0055498_100107381	3300004058	Natural And Restored Wetlands	MKRIALAVALVVMVAGACKKAENRGMAADSNSMRADTAMMSDSMHMDTTHHMAPDTTKARRP*
Ga0062593_1000070083	3300004114	Soil	MKRIALAVALVVIVAGACKKAEDRGMAADSTRADSMQMSDSMKMDTTHHMAPDTTKARRP
Ga0062594_1016730332	3300005093	Soil	MKRIALAVALVVMAVGACKKAEDRGMAADSTRADSMMMSDSMKADTTHHMAPDTTKARRP
Ga0066674_100599282	3300005166	Soil	MKRIALAVAVVVMAAGACKKADNSNAGMQSDTTKMMADSMKMAPAADTMKMGADTSK
Ga0066672_108094062	3300005167	Soil	MKRIALAVAVVVMAGACKKAQNSNTGAESTRPDSMKMAADSMKMAPADTTHHMA
Ga0070699_1002137961	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIALVVAVVVMAAGACKKAQNSNTNAETMRADSMKMADSM
Ga0070697_1020826891	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIALAVAVVVMAAGACKKAQNSNAAADSSSMKMADSMKMMA
Ga0070695_1000838022	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIALAVALVIMAAGGCKKAEDRGMAADSARADSMMMSDSMKADTTHHMAPDTAKARRP
Ga0066698_102606062	3300005558	Soil	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMKMADSMKMMAPADTTH
Ga0066703_107997531	3300005568	Soil	MKRIALAVAIVVMAAGACKKAEQSNTATPPADSMKMADSMKMMAPADT
Ga0066706_105214181	3300005598	Soil	MKRIALAVAVVVMAAGACKKAQNTPAAETTPGDTMKMADSMK
Ga0066656_100142861	3300006034	Soil	MKRIALAVALVVMAAGACKKAEQSNTATPPADSMKMADSMKMMAPADTTHHMA
Ga0066656_103763402	3300006034	Soil	MKRIALAVAVVVMAVGACKKAEQSNTGAPPADSMKMADSMKMMAPADTTHHMAADTAK
Ga0075428_1000112803	3300006844	Populus Rhizosphere	MKRTALAVAVVIMVASACKKAENSNAGMQADTTKMMADSMKMAPGDTTHMMADTTKAPPRRP*
Ga0075428_1000497292	3300006844	Populus Rhizosphere	MKRIALAVALVVMAAGACKKAEDRGAAADTTQADTSAMMMSDSMKADTTHHMAPDTTKARRP*
Ga0075431_1011545122	3300006847	Populus Rhizosphere	MKRIVLVMAFVVMAAGACSKADNRGMAADSARADSMRMADSMKMAPGDTTHMMGDTTKARRP*
Ga0075420_1004804621	3300006853	Populus Rhizosphere	MKRIALAVAVVIMVASACKKAENSNAGMQADTTKMMADSMKMAPGDTTHMMADTTKAPPRRP*
Ga0073934_105904302	3300006865	Hot Spring Sediment	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMRMADSMKMAPGDTSHMMMDTTKTRRP*
Ga0075426_115464271	3300006903	Populus Rhizosphere	MKRIALAVAVVVMAAGACKKAQNSNAAADSSSMKMADSMKMMAPADTTKAPTT
Ga0079216_113383762	3300006918	Agricultural Soil	MKRIALAVALVVMAAAACKKAEDRGMAADSARADSMRMADSMKADTMHHMAPDTAKTRP*
Ga0079218_103687582	3300007004	Agricultural Soil	MKRIALAVALVVMAAAACKKAEDRGMAADSARADSIRMADSMKADTMHHMAPDTTKTRP*
Ga0099795_104991992	3300007788	Vadose Zone Soil	MKRIALAVAVVVLAAGACKKAGNSNTAADSMRADSMGMADSMKMMAPADTTHHMVDTAKAQPATKRRP*
Ga0111538_112884951	3300009156	Populus Rhizosphere	MKRIALAVALAVIVAGACKKAEDRGMAADSTRADSMQMSDSMKMDTTHHMAPDTTKARRP
Ga0105252_100066162	3300009678	Soil	MKRIALAVTLVVMAAGACKKADDRGMAADSAAMSDSMKADTTHHMAPDTAKTRP*
Ga0105252_100086582	3300009678	Soil	MKRIALAVALVVMAAGACRKAEDRGAAADTSSTMMSDSMKADTTHHMAPDTAKARP*
Ga0105063_10208862	3300009804	Groundwater Sand	MKRIGLAVALVVMAAGACRKAEDRGMAADSAAMADSMKMMSDSMHRMADSMKAMDTTKARP*
Ga0105085_10527141	3300009820	Groundwater Sand	MKRIALAVALVVMAAGACRKAEDRGMAADSAAMADSMKM
Ga0105064_11387722	3300009821	Groundwater Sand	MKRIALAVALVVMAAGACRKAEDRGMAADSAAMADSMKMMSDSMHRMADSMKAMDTTKHRP*
Ga0105066_11666092	3300009822	Groundwater Sand	MKRIALAVALVVMAAGACRKAEDRGMAADSAAMADSMKMMSDSMHRMADSMKAMDTTKRP
Ga0134088_102680222	3300010304	Grasslands Soil	MKRIVLAVALVVMAAGACKKAEQSNTATPPADSMKMADSMKMMAPADTTHHMAA
Ga0134086_102196482	3300010323	Grasslands Soil	MKRIALAVAVVVMAAGACKKAQNSNTNAETMRADSMKMADSMKMMAPADTTHHMAADT
Ga0134080_103451322	3300010333	Grasslands Soil	MKRIALAVAVVVMAAGACKKAQNSNAAADSSSMKMADSMKMAPADTTHMMADTSK
Ga0137313_100066911	3300011403	Soil	KRIALAVTLVVMAAGACKKADDRGMAADSAAMSDSMKADTTHHMAPDTAKTRP*
Ga0137423_10145751	3300011430	Soil	MKRIALAVTLVVMAAGACKKADDRGMAADSAAMSDSMKADTTHHMAPD
Ga0137427_101571301	3300011445	Soil	STGASMKRIALAVALVVMAAGACKKAEDRGTAADSTRADSMMMSDSMHADTTHHMAPDTAKARRP*
Ga0137321_10077401	3300012175	Soil	MKRIALAVTLVVMAAGACKKADDRGMAADSAAMSDS
Ga0137364_102294472	3300012198	Vadose Zone Soil	MKRIALAVAVVVLAAGACKKAENSNAAADSMRADSMRMADSMKMAPADTTHHMADTAKAQPTTKRRP*
Ga0137382_110779711	3300012200	Vadose Zone Soil	MKRIALAVAVVVMAAGACKKAQNSNAGMAADTTTRMADSMKMAPGDTTHMMGD
Ga0137363_112418971	3300012202	Vadose Zone Soil	MKRIALAVALVVMAAGACKKAAQSNTATPPADSMKMADSMKMMAP
Ga0137399_113115472	3300012203	Vadose Zone Soil	MKRIALAVAVVVMAVGACKKAQNSNAAADNARADSMKMADSMKMMAPADTA
Ga0137374_100074273	3300012204	Vadose Zone Soil	MKRIALAVALVVMAAGACKKAEERGMAADSARADSMKMADSMKMAPGDTTHMMGDTAKAHPAPARRP*
Ga0137378_100052918	3300012210	Vadose Zone Soil	MKRIALAVAVVVMAAGACKKAQNTPAAETTPGDTMKMADSMKMMAPADTTHHMAADTTKAKAP
Ga0137387_105655242	3300012349	Vadose Zone Soil	MKRIALAVAVVVMAAGACKKAQNSNAAADNARADSMKMADSMKMMAPADT
Ga0137387_108371031	3300012349	Vadose Zone Soil	ASMKRIALAVALVVMAAGACKKAEDRSMAADSARADSMKMADSMKMAPGDTTHMMGDTAKAHPAPARRP*
Ga0137386_100787911	3300012351	Vadose Zone Soil	MKRIALAVAVVVMAAGACKKAQNTPAAETTPGDTMKMADSMKMMAPADTTHHMAADTTKAKA
Ga0137367_102891512	3300012353	Vadose Zone Soil	MKRIALAVAVVVMAAGACKKAEQSNTTPPADTSKMMADTMKMMAPADTTKAPSTT
Ga0137371_108464731	3300012356	Vadose Zone Soil	MKRIALAVAVVVMAAGACKKAQNSNADTMRADSTRMADSMKMAPGDT
Ga0137375_100134515	3300012360	Vadose Zone Soil	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMKMADSMKMAPGDTTHMMGDTAKAHPAPARRP*
Ga0137361_106592211	3300012362	Vadose Zone Soil	MKRIALAVAIVVMAAGACKKADQSKSVNPPGDAMKMADSMKMMAPADTTHDMAADTSK
Ga0137397_104459342	3300012685	Vadose Zone Soil	MKRIALVMALVVMAAGACKKAENRGMAADTTHADSMKMADSMKMMAPGDTTHRMSDTTKHRP*
Ga0157303_100130233	3300012896	Soil	IALAVALVVIVAGACKKAEDRGMAADSTRADSMQMSDSMKMDTTHHMAPDTTKARRP*
Ga0137394_108833812	3300012922	Vadose Zone Soil	MKRIALVMALVVMAAGACKKAADRGMAADSARADS
Ga0137416_103040422	3300012927	Vadose Zone Soil	MKRIALAVAVVVMAVGACKKAQNTPAADATSADSMKMADSMKMIAPADTTH
Ga0137416_108266502	3300012927	Vadose Zone Soil	MKRIALAVAIVVMAAGACKKAAQSNTATPPADSMKMADSMKMMA
Ga0137407_120565561	3300012930	Vadose Zone Soil	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMKMADSMKMAPADTVHHMVDTAKAHPAPARPTRRP*
Ga0134075_100529881	3300014154	Grasslands Soil	MKRIALVVALVVMAAGACKKAQQGGSMAADSARMADSMKMADSMKMTRTDTTHHMAADT
Ga0134075_101540412	3300014154	Grasslands Soil	MKRIALAVAVVVMAVGACKKAAQSNTATPPADSMKMADSMKMMAPADTTHH
Ga0075320_11235841	3300014255	Natural And Restored Wetlands	MKRIALAVALVVMGAGACKKAEDRGAATQADSSSIMMSDSMKADTTHHMAPDTAKARP*
Ga0137420_10413492	3300015054	Vadose Zone Soil	MKRIALAVAVVVMAAGACKKAQNTPAADATSADSMKMADSMKMMAPADTTHH
Ga0173480_110028251	3300015200	Soil	MKRIALAVALVVIVAGACKKAEDRGMAADSTRADSMQMSDSMKMD
Ga0132256_1010073201	3300015372	Arabidopsis Rhizosphere	MKRIALAVALVVMAAGACKKAEDRGMTADSARADSMMMSDSMKADTAHH
Ga0184610_10068413	3300017997	Groundwater Sediment	MKRIALAVALVVMAAGACKKAEDRGMAADSAAMADSMKMMSDSMHRMADSMKAMDTTKRR
Ga0184634_103944572	3300018031	Groundwater Sediment	MKRIALAVALVVMAASACKKAEDRGMAADSARADSMRMADSMKMAPGDTSHMMMTDTTKARRP
Ga0184623_100560692	3300018056	Groundwater Sediment	MKRIALAVALVVMAAGACKKAEDRGMAADSAAMADSMKMMSDSMHRMADSMKAMDTTKQR
Ga0184629_101759452	3300018084	Groundwater Sediment	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMRMADSMKMAPDTSHHMAPDTTKMRRP
Ga0184629_104064942	3300018084	Groundwater Sediment	MKRIALAVALVVMAAGACRKAEDRGMAADSAAMADTMKMMSDSMHRMADSMKALDTTKAR
Ga0066655_102316292	3300018431	Grasslands Soil	MKRIALAVAVVVMAVGACKKAAQSNTATPPADSMKMADSMKMMAPADTTHHMAADTTKAR
Ga0066655_109764231	3300018431	Grasslands Soil	MKRIALAVALVVMAAGACKKAQDRGMAADSARADSMKMADSMKMMAPADTTHHMM
Ga0066667_104411751	3300018433	Grasslands Soil	MKRIALAVAMVVMAAGACKKAGQSQTAADSARMADSMRMADSMKMATDTMHRMG
Ga0193723_10099321	3300019879	Soil	MKRIALAVAVVVMAAGACKKAQNSNAMDTMRADSMKMADSMKMMAPADTTKKA
Ga0180109_14089372	3300020067	Groundwater Sediment	MKRIALAVALVVMAAGACRKAEDRGMAADSAAMADSMKMMSDSMHRMADSMKAMDTTKNR
Ga0210378_100490912	3300021073	Groundwater Sediment	MKRIALAVALVVMAAGACKKAEDRGMAADSAAMADTMKMMSDSMHRMADSMKAMDTTKAR
Ga0247678_10554732	3300024325	Soil	MKRIALAVALVAIVAGACKKAEDRGMAADSTRADSMQMSDSMKMDTTHHMAPDTTKARRP
Ga0137417_12797991	3300024330	Vadose Zone Soil	MKRIALAVALVVIAAGACKKAADRGMAADSARADSMKMKMAD
Ga0209172_103403372	3300025310	Hot Spring Sediment	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMRMADSMKMAPGDTSHMMMDTTKTRRP
Ga0207662_105976122	3300025918	Switchgrass Rhizosphere	MKRIALAVALVAIVAGACKKAEDRGMAADSTRADSMQMSDSMKMDTTHHMAP
Ga0209438_11929442	3300026285	Grasslands Soil	MKRIALVMALVVMAAGACKKAEDRGMAADTTHADSMKMADSMKMAPGDTTHRMSDTTKHR
Ga0209239_12336192	3300026310	Grasslands Soil	MKRIALAVAVVVMAAGACKKADNSNAGMQSDTTKMMADSMK
Ga0209155_10574742	3300026316	Soil	MKRIALVVALVVMAAGACTKAQQNTTSDTTRMTTDTT
Ga0209472_10907572	3300026323	Soil	MKRIALAVAVVVMAAGACKKAQNSNAGMAADTTTRMADSMKMAPGDTTH
Ga0209470_10201171	3300026324	Soil	MKRIALAVAVVVMAAGACKKAQNTPAAETTHGDTMKMA
Ga0209375_10047731	3300026329	Soil	MKRIALAVAVVVMAAGACKKADNSNAGMQSDTTKMMADSMKMAPAA
Ga0209159_11243972	3300026343	Soil	MKRIALVVALVVMAAGACKKAQQGGSMAADSARMADSMKMADSMKMTRTDTTHHMA
Ga0209056_106800232	3300026538	Soil	MKRIALAVAVVVMAGAYKKAQNSNTGAETRPDSMKMAADS
Ga0209215_10014342	3300027266	Forest Soil	MKRIALAVALVVMAAGACKKAEDRGMAADTTHADSMMMSDSMKMDTTHHMAPDTAKARRP
Ga0208685_10391552	3300027513	Soil	MKRIALAVALVVMAAGACKKAEDRGTAADSTRADSM
Ga0208454_10041853	3300027573	Soil	MKRIALAVTLVVMAAGACKKADDRGMAADSAAMSDSMKADTTHHMAPDTAKTRP
Ga0208454_10063742	3300027573	Soil	MKRIALAVALVVMAAGACRKAEDRGAAADTSSTMMSDSMKADTTHHMAPDTAKARP
Ga0208454_10872282	3300027573	Soil	MKRIALAVALVVMAAGACKKAEDRGTAADSTRADSMMMSDSMHADTTHHMAPDTAKARRP
Ga0209388_11788752	3300027655	Vadose Zone Soil	MKRIALAVAIVVMAAGACKKAEQSNTATPPADSMKMADSMKMMAP
Ga0209388_11975181	3300027655	Vadose Zone Soil	MKRIALAVAVVVMAAGACTKAQNNNANTTRADTTRMADSMKMMAPADTTHHMAADTAKAHVT
Ga0207428_107944542	3300027907	Populus Rhizosphere	MKRIALAVALVVMAAGACKKAEDRGAAADTTQADTSAMMMSDSMKADTTHHMAPDTTKARRP
Ga0209382_108374272	3300027909	Populus Rhizosphere	MKRTALAVAVVIMVASACKKAENSNAGMQADTTKMMADSMK
Ga0209382_115963472	3300027909	Populus Rhizosphere	MKRTALAVAVVIMVASACKKAENSNAGMQADTTKMMADSMKMAPGDTTHMMADTTKAPPRRP
Ga0307495_100141461	3300031199	Soil	MKRIALAVALVVVAAGACKKAENRGMAADSTRADSTMMSDSM
Ga0307497_102043952	3300031226	Soil	MKRIALAVALVVMAAGACKKAEDKGMAADSARADSMMMSDSMKMDTTHHMAPDTTKAHRP
Ga0307469_105566261	3300031720	Hardwood Forest Soil	MKRIALAVAVVVMAAGACKKAQNSNAETMRADSMKMADSMKMMAP
Ga0310904_109789232	3300031854	Soil	MKRIALAVALVVMVAGACKKAEDRGMAADSTRADSMQMSDSMKMDTTHHMAPDTTKARRP
Ga0307471_1025461071	3300032180	Hardwood Forest Soil	MKRIALAVALVIMAAGACKKAEDRGMAADSARADSMMMSDSMKADTTHHMAPDTAKARRP
Ga0214472_102228522	3300033407	Soil	MKRIALAVALVVIAAGACKKAEDRGMAADSAAMADSMKMMSDSMHRMADSMKAMDTTKAR
Ga0364932_0039507_1384_1575	3300034177	Sediment	MKRIALAVALVVMAAGACKKAEDRGMAADSARADSMRMADSMKMAPGDTSHMMMTDTTKARRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085325

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences