Metagenome Family F085323

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085323
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	48 residues
Representative Sequence	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCIVAIGKG
Number of Associated Samples	80
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.57 %
% of genes near scaffold ends (potentially truncated)	26.13 %
% of genes from short scaffolds (< 2000 bps)	64.86 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.757 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (24.324 % of family members)
Environment Ontology (ENVO)	Unclassified (29.730 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.766 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 61.22% β-sheet: 0.00% Coil/Unstructured: 38.78%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF09828	Chrome_Resist	5.41
PF00174	Oxidored_molyb	3.60
PF07589	PEP-CTERM	2.70
PF16078	2-oxogl_dehyd_N	2.70
PF00491	Arginase	1.80
PF13472	Lipase_GDSL_2	1.80
PF04952	AstE_AspA	1.80
PF01464	SLT	0.90
PF01544	CorA	0.90
PF02518	HATPase_c	0.90
PF00413	Peptidase_M10	0.90
PF13520	AA_permease_2	0.90
PF14534	DUF4440	0.90
PF13560	HTH_31	0.90
PF01695	IstB_IS21	0.90
PF00266	Aminotran_5	0.90
PF02368	Big_2	0.90
PF02371	Transposase_20	0.90
PF00903	Glyoxalase	0.90
PF11006	DUF2845	0.90
PF01292	Ni_hydr_CYTB	0.90
PF02772	S-AdoMet_synt_M	0.90
PF00033	Cytochrome_B	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	3.60
COG3915	Uncharacterized conserved protein	Function unknown [S]	3.60
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	1.80
COG0192	S-adenosylmethionine synthetase	Coenzyme transport and metabolism [H]	0.90
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.90
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	0.90
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.90
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.90
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.90
COG3038	Cytochrome b561	Energy production and conversion [C]	0.90
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.90
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.90
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.90
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.76 %
Unclassified	root	N/A	43.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.76 %
Unclassified	root	N/A	43.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.76 %
Unclassified	root	N/A	43.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.53 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.21 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.24 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	15.32 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.21 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.31 %
Candidatus Muproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.24 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.21 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	1.80 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.80 %
Candidatus Muproteobacteria bacterium RBG_16_60_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_60_9	0.90 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.90 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.90 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.24 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	15.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.21 %
Woeseiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	1.80 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.80 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.90 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.90 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.90 %
Candidatus Muproteobacteria bacterium RBG_16_60_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_60_9	0.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.24 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	15.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.21 %
unclassified Woeseiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae	1.80 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	1.80 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.90 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.90 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.90 %
Candidatus Muproteobacteria bacterium RBG_16_60_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_60_9	0.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.24 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	15.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.21 %
Woeseiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium	1.80 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	1.80 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.90 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.90 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.90 %
Candidatus Muproteobacteria bacterium RBG_16_60_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_60_9	0.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_479110	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	933	Open in IMG/M
3300003371\|JGI26145J50221_1024936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	593	Open in IMG/M
3300004114\|Ga0062593_102469209	Not Available	588	Open in IMG/M
3300004157\|Ga0062590_101581602	Not Available	662	Open in IMG/M
3300004463\|Ga0063356_100051671	All Organisms → cellular organisms → Bacteria	4147	Open in IMG/M
3300004463\|Ga0063356_101581306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	975	Open in IMG/M
3300004463\|Ga0063356_103616820	Not Available	666	Open in IMG/M
3300004643\|Ga0062591_100428439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1106	Open in IMG/M
3300004643\|Ga0062591_101433915	Not Available	687	Open in IMG/M
3300005093\|Ga0062594_100537479	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1002	Open in IMG/M
3300005328\|Ga0070676_10118769	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300005347\|Ga0070668_100330823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1285	Open in IMG/M
3300005353\|Ga0070669_101959126	Not Available	512	Open in IMG/M
3300005366\|Ga0070659_101015837	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300005441\|Ga0070700_101638953	Not Available	550	Open in IMG/M
3300005457\|Ga0070662_100123045	Not Available	1990	Open in IMG/M
3300005459\|Ga0068867_100099314	All Organisms → cellular organisms → Bacteria	2220	Open in IMG/M
3300005543\|Ga0070672_100090537	All Organisms → cellular organisms → Bacteria	2467	Open in IMG/M
3300005545\|Ga0070695_101887371	Not Available	502	Open in IMG/M
3300005719\|Ga0068861_100195927	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1692	Open in IMG/M
3300005719\|Ga0068861_101171107	Not Available	742	Open in IMG/M
3300005840\|Ga0068870_10053237	All Organisms → cellular organisms → Bacteria	2149	Open in IMG/M
3300006844\|Ga0075428_100028272	All Organisms → cellular organisms → Bacteria	6201	Open in IMG/M
3300006844\|Ga0075428_100075794	All Organisms → cellular organisms → Bacteria → Proteobacteria	3673	Open in IMG/M
3300006844\|Ga0075428_100204627	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2133	Open in IMG/M
3300006845\|Ga0075421_100136356	All Organisms → cellular organisms → Bacteria	3073	Open in IMG/M
3300006845\|Ga0075421_100195688	All Organisms → cellular organisms → Bacteria	2505	Open in IMG/M
3300006846\|Ga0075430_100007548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9182	Open in IMG/M
3300006846\|Ga0075430_100040411	Not Available	3948	Open in IMG/M
3300006846\|Ga0075430_100062093	All Organisms → cellular organisms → Bacteria → Proteobacteria	3139	Open in IMG/M
3300006847\|Ga0075431_100136897	All Organisms → cellular organisms → Bacteria	2525	Open in IMG/M
3300006847\|Ga0075431_100208279	Not Available	1998	Open in IMG/M
3300006847\|Ga0075431_100630781	Not Available	1053	Open in IMG/M
3300006853\|Ga0075420_101311155	Not Available	621	Open in IMG/M
3300006876\|Ga0079217_10058330	Not Available	1582	Open in IMG/M
3300006876\|Ga0079217_11272727	Not Available	565	Open in IMG/M
3300006880\|Ga0075429_100100440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2525	Open in IMG/M
3300006881\|Ga0068865_100092374	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2198	Open in IMG/M
3300006894\|Ga0079215_10078214	Not Available	1386	Open in IMG/M
3300006918\|Ga0079216_10747146	Not Available	707	Open in IMG/M
3300006969\|Ga0075419_10605982	Not Available	770	Open in IMG/M
3300006969\|Ga0075419_10618556	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	762	Open in IMG/M
3300007004\|Ga0079218_10026381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3283	Open in IMG/M
3300007004\|Ga0079218_10055184	Not Available	2495	Open in IMG/M
3300007004\|Ga0079218_10131347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1790	Open in IMG/M
3300009100\|Ga0075418_10018808	All Organisms → cellular organisms → Bacteria → Proteobacteria	7630	Open in IMG/M
3300009100\|Ga0075418_10034836	All Organisms → cellular organisms → Bacteria	5464	Open in IMG/M
3300009100\|Ga0075418_10116040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium	2843	Open in IMG/M
3300009100\|Ga0075418_10587700	Not Available	1198	Open in IMG/M
3300009147\|Ga0114129_10732633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium	1267	Open in IMG/M
3300009147\|Ga0114129_11161548	Not Available	963	Open in IMG/M
3300009156\|Ga0111538_10319320	Not Available	1965	Open in IMG/M
3300009157\|Ga0105092_10007839	All Organisms → cellular organisms → Bacteria	5620	Open in IMG/M
3300009553\|Ga0105249_11914098	Not Available	666	Open in IMG/M
3300010399\|Ga0134127_10224835	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1761	Open in IMG/M
3300012892\|Ga0157294_10126983	Not Available	685	Open in IMG/M
3300012905\|Ga0157296_10008898	Not Available	1658	Open in IMG/M
3300012905\|Ga0157296_10019904	Not Available	1301	Open in IMG/M
3300013096\|Ga0157307_1125377	Not Available	573	Open in IMG/M
3300015077\|Ga0173483_10982555	Not Available	504	Open in IMG/M
3300018469\|Ga0190270_10052282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2849	Open in IMG/M
3300018469\|Ga0190270_12808471	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300018481\|Ga0190271_10703712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1133	Open in IMG/M
3300018481\|Ga0190271_12221095	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	655	Open in IMG/M
3300022901\|Ga0247788_1056537	Not Available	735	Open in IMG/M
3300023057\|Ga0247797_1005775	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1367	Open in IMG/M
3300025885\|Ga0207653_10244390	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300025893\|Ga0207682_10175457	Not Available	977	Open in IMG/M
3300025899\|Ga0207642_10798893	Not Available	600	Open in IMG/M
3300025907\|Ga0207645_10010126	All Organisms → cellular organisms → Bacteria → Proteobacteria	6488	Open in IMG/M
3300025907\|Ga0207645_10034845	Not Available	3234	Open in IMG/M
3300025907\|Ga0207645_10041927	All Organisms → cellular organisms → Bacteria	2929	Open in IMG/M
3300025908\|Ga0207643_10013388	All Organisms → cellular organisms → Bacteria → Proteobacteria	4442	Open in IMG/M
3300025923\|Ga0207681_10041874	Not Available	3056	Open in IMG/M
3300025930\|Ga0207701_10009777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	9448	Open in IMG/M
3300025930\|Ga0207701_10026283	All Organisms → cellular organisms → Bacteria → Proteobacteria	5530	Open in IMG/M
3300025934\|Ga0207686_11022604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	671	Open in IMG/M
3300025937\|Ga0207669_10010216	All Organisms → cellular organisms → Bacteria	4511	Open in IMG/M
3300025938\|Ga0207704_10500007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	980	Open in IMG/M
3300025938\|Ga0207704_11395693	Not Available	600	Open in IMG/M
3300025940\|Ga0207691_10004840	All Organisms → cellular organisms → Bacteria → Proteobacteria	13018	Open in IMG/M
3300025972\|Ga0207668_10109055	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2073	Open in IMG/M
3300025972\|Ga0207668_11536116	Not Available	601	Open in IMG/M
3300026075\|Ga0207708_10236376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1468	Open in IMG/M
3300026116\|Ga0207674_12288182	Not Available	503	Open in IMG/M
3300026811\|Ga0207529_101232	All Organisms → cellular organisms → Bacteria → Proteobacteria	816	Open in IMG/M
3300027252\|Ga0209973_1059510	All Organisms → cellular organisms → Bacteria → PVC group	586	Open in IMG/M
3300027364\|Ga0209967_1002987	Not Available	2216	Open in IMG/M
3300027421\|Ga0207563_101123	Not Available	824	Open in IMG/M
3300027614\|Ga0209970_1029582	Not Available	949	Open in IMG/M
3300027637\|Ga0209818_1189567	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	596	Open in IMG/M
3300027691\|Ga0209485_1193465	Not Available	630	Open in IMG/M
3300027722\|Ga0209819_10146395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300027880\|Ga0209481_10170748	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300027886\|Ga0209486_10005631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5439	Open in IMG/M
3300027886\|Ga0209486_10103857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1512	Open in IMG/M
3300027909\|Ga0209382_10111221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3201	Open in IMG/M
3300027909\|Ga0209382_10147332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2729	Open in IMG/M
3300027909\|Ga0209382_10247279	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300027909\|Ga0209382_11935379	Not Available	568	Open in IMG/M
3300028380\|Ga0268265_10177014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_60_9	1829	Open in IMG/M
3300028587\|Ga0247828_10148697	Not Available	1172	Open in IMG/M
3300031538\|Ga0310888_10660135	Not Available	639	Open in IMG/M
3300031562\|Ga0310886_10015432	All Organisms → cellular organisms → Bacteria	2927	Open in IMG/M
3300031847\|Ga0310907_10625376	Not Available	589	Open in IMG/M
3300031892\|Ga0310893_10158079	Not Available	886	Open in IMG/M
3300031908\|Ga0310900_11594231	Not Available	552	Open in IMG/M
3300031913\|Ga0310891_10051500	Not Available	1155	Open in IMG/M
3300031943\|Ga0310885_10012633	All Organisms → cellular organisms → Bacteria	2957	Open in IMG/M
3300032122\|Ga0310895_10199606	Not Available	898	Open in IMG/M
3300034176\|Ga0364931_0060126	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1164	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	55.86%
Environmental	Environmental	44.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	55.86%
Terrestrial	Environmental → Terrestrial	42.34%
Aquatic	Environmental → Aquatic	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	39.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.22%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Floodplain	Environmental → Terrestrial → Floodplain	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.22%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.51%
Loam	Environmental → Terrestrial → Soil → Loam	3.60%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.13%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	18.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	24.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	9.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.11%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.31%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	6.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026811	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300027421	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-10 (SPAdes)	Environmental	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0918.00000110	2162886013	Switchgrass Rhizosphere	PVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG
JGI26145J50221_10249362	3300003371	Arabidopsis Thaliana Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG*
Ga0062593_1024692092	3300004114	Soil	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCVVTIGKG*
Ga0062590_1015816022	3300004157	Soil	MRSRTGQRVPVWLQMIVVVVCATAMVIAADAADHCGETTAQCIVAISNG*
Ga0063356_1000516715	3300004463	Arabidopsis Thaliana Rhizosphere	MRSRTGQRVPVWLQMIVVVVCATAMVIAADAEGYCGETTAKCLVAIGKG*
Ga0063356_1015813062	3300004463	Arabidopsis Thaliana Rhizosphere	MRSRAGQRVPVWLQVIVVVVCATAMVIAADAEDYCGEITAKCIVAIGQG*
Ga0063356_1036168201	3300004463	Arabidopsis Thaliana Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGETAAKCIVAIGKG*
Ga0062591_1004284391	3300004643	Soil	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG*
Ga0062591_1014339151	3300004643	Soil	MDGYRRMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA*
Ga0062594_1005374792	3300005093	Soil	MRSRAGQRVPVWLQVIVVVVWATAMVIAAGANDYCGETTAKCIVAIGQGLTGS*
Ga0070676_101187692	3300005328	Miscanthus Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCIVAIGKG*
Ga0070668_1003308233	3300005347	Switchgrass Rhizosphere	ECRRMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG*
Ga0070669_1019591261	3300005353	Switchgrass Rhizosphere	MRSRAGQRVPVWLQVIVVVVWATAMVIAAGANDYCGETTAKCIVAIG
Ga0070659_1010158371	3300005366	Corn Rhizosphere	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVVIGKG*
Ga0070700_1016389532	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	RAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCSVGIGKG*
Ga0070662_1001230454	3300005457	Corn Rhizosphere	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVGIGKG*
Ga0068867_1000993141	3300005459	Miscanthus Rhizosphere	SDQCRRMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG*
Ga0070672_1000905373	3300005543	Miscanthus Rhizosphere	MRSRAGQRVPVWLQIIVVVVFATAMVIAADAEDHCGETTAGCIVAIGKG*
Ga0070695_1018873711	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MDGYRRMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDRCGATNAKCIVAIGKA*
Ga0068861_1001959272	3300005719	Switchgrass Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGETTAGCIVAIGKG*
Ga0068861_1011711071	3300005719	Switchgrass Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA*
Ga0068870_100532374	3300005840	Miscanthus Rhizosphere	RAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG*
Ga0075428_1000282725	3300006844	Populus Rhizosphere	MRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDYCGETTAKCIVAIGKG*
Ga0075428_1000757944	3300006844	Populus Rhizosphere	MRSRAGQRVPVWLQMIVVVVCATAMVIAADAKNYCGETTAKCLVGIGKG*
Ga0075428_1002046275	3300006844	Populus Rhizosphere	MRSRAGQRVPVWLQVIVVVVCATAMVIAADTEDYCGEITARCIVAIGQG*
Ga0075421_1001363561	3300006845	Populus Rhizosphere	MRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDSCGETSAKCIVAIGKG*
Ga0075421_1001956884	3300006845	Populus Rhizosphere	MRSRAGQRVPLWLQIIVVVVWATAMVIAADAEDHCGETTAKCMVAIGKG*
Ga0075430_1000075484	3300006846	Populus Rhizosphere	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVAIGKG*
Ga0075430_1000404116	3300006846	Populus Rhizosphere	MDGYRRMRARAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA*
Ga0075430_1000620937	3300006846	Populus Rhizosphere	MRFRAGQRVPVWLQMIVVVVCATAMVIAADAEGSCGETSAKCIVAIGKG*
Ga0075431_1001368974	3300006847	Populus Rhizosphere	MRSRAGQRVPVWLQVIVVVVCATAMVIAADTEDYCGEITAKCIVAIGQG*
Ga0075431_1002082792	3300006847	Populus Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCMVAIGKG*
Ga0075431_1006307812	3300006847	Populus Rhizosphere	MRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDYCGETTAKCIVAIGRG*
Ga0075420_1013111551	3300006853	Populus Rhizosphere	MRCRRMRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDYCGETTAKCIVAIGRG*
Ga0079217_100583303	3300006876	Agricultural Soil	MRCRRMRSGAGQRVPLWLQMGAVVVCATAMVIAADAEDCGETAAKCVVAIDKG*
Ga0079217_112727272	3300006876	Agricultural Soil	MRSRAGQGVPIWLQVIVVVVCATAMVIGADAEDNCGETTAKCIVAIGKG*
Ga0075429_1001004401	3300006880	Populus Rhizosphere	RVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA*
Ga0068865_1000923743	3300006881	Miscanthus Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAGCIVAIGKG*
Ga0079215_100782141	3300006894	Agricultural Soil	MRCRRMRSGAGQRVPLWLQMVVVVVCATAMVIAADAEDCGETTAKCVVAIDKG*
Ga0079216_107471462	3300006918	Agricultural Soil	MRSGAGQRVPLWLQMVVVVVCATAMVIAADAEDCGETTANCVVAIDKG*
Ga0075419_106059821	3300006969	Populus Rhizosphere	MRCRRMRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDYCGETTAKCIVAIGKG*
Ga0075419_106185562	3300006969	Populus Rhizosphere	VWLQVIVVVVCATAMVIAADTEDYCGEITARCIVAIGQG*
Ga0079218_100263815	3300007004	Agricultural Soil	MRCRRMRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDYCGETTAKCIVAIDRG*
Ga0079218_100551844	3300007004	Agricultural Soil	MRSRAGQRVPVWLQVIVVVVCATAMVIAADAEDYCGEITAKCIVAIGKG*
Ga0079218_101313472	3300007004	Agricultural Soil	MRSGAGQRVPLWLQMVAVVVCATAMVIAADAEDCGETAAKCVVAIDKG*
Ga0075418_1001880812	3300009100	Populus Rhizosphere	MIVVVVCATAMVIAADAEDYCGETTAKCIVAIGRG*
Ga0075418_100348364	3300009100	Populus Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCIVAIGKG*
Ga0075418_101160402	3300009100	Populus Rhizosphere	MIVVVVCATAMVIAADAKNYCGEATAKCLVGIGKG*
Ga0075418_105877003	3300009100	Populus Rhizosphere	MDGYRRMRARAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETNAKCIVAIGKA*
Ga0114129_107326332	3300009147	Populus Rhizosphere	MIVVVVCATAMVIAADAKNYCGETTAKCLVGIGKG*
Ga0114129_111615482	3300009147	Populus Rhizosphere	MDGYRRMRARAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKV*
Ga0111538_103193201	3300009156	Populus Rhizosphere	RVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVAIGKG*
Ga0105092_100078397	3300009157	Freshwater Sediment	MRSREGQRVLVWLQMIIVVVCATAMVIAADAEDYCGETTAKCIVAIGKG*
Ga0105249_119140982	3300009553	Switchgrass Rhizosphere	MDGYRRMRARAGQRVPVWLQIIVVVVCATAMVIAADAEDRCGATNAKCIVAIGKA*
Ga0134127_102248352	3300010399	Terrestrial Soil	MRSRAGQRVPVWLQIIVVVVFATAMVIAADAEDHCGDTTAKCIVSIGKG*
Ga0157294_101269832	3300012892	Soil	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDHCGETTAKCVVTIGKG*
Ga0157296_100088983	3300012905	Soil	VPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCVVTIGKG*
Ga0157296_100199043	3300012905	Soil	WLQMIIVVVCATAMVIAADAEDYCGATAKCIVGIGKG*
Ga0157307_11253771	3300013096	Soil	RMRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVGIGKG*
Ga0173483_109825551	3300015077	Soil	VPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAI
Ga0190270_100522821	3300018469	Soil	MRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDYCGETTAKCIVAIDRG
Ga0190270_128084711	3300018469	Soil	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVAIGKG
Ga0190271_107037121	3300018481	Soil	MRARTGQRVPLWLQIIVVVVCATGLVIAADAEDYGAGTPAPCIVASGEG
Ga0190271_122210951	3300018481	Soil	MRFRAGQRVPVWLQMIVVVVCATAMVIAADAADYCGQTSAKCIVAIGKG
Ga0247788_10565372	3300022901	Soil	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVGIGKG
Ga0247797_10057751	3300023057	Soil	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG
Ga0207653_102443902	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MDGYRRMRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVVIGKG
Ga0207682_101754572	3300025893	Miscanthus Rhizosphere	MRSRAGQRVPVWLQVIVVVVWATAMVIAAGANDYCGETTAKCIVAIGQGLTGS
Ga0207642_107988931	3300025899	Miscanthus Rhizosphere	MDGYRRMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA
Ga0207645_100101266	3300025907	Miscanthus Rhizosphere	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVVIGKG
Ga0207645_100348451	3300025907	Miscanthus Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA
Ga0207645_100419273	3300025907	Miscanthus Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCIVAIGKG
Ga0207643_100133885	3300025908	Miscanthus Rhizosphere	CRRMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAGCIVAIGKG
Ga0207681_100418743	3300025923	Switchgrass Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCVVTIGKG
Ga0207701_100097771	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA
Ga0207701_100262836	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RSRAGQRVPVWLQIIVVVVFATAMVIAADAEDHCGETTAGCIVAIGKG
Ga0207686_110226042	3300025934	Miscanthus Rhizosphere	PVLSRISDGVCGRMRSRAGQRVPVWLQVIVVVVWATAMVIAADAEDHCGETTAGCIVAIGKG
Ga0207669_100102163	3300025937	Miscanthus Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGETTAGCIVAIGKG
Ga0207704_105000071	3300025938	Miscanthus Rhizosphere	ECRRMRSRAGQRVPVWLQIIVVVVFATAMVIAADAEDHCGETTAGCIVAIGKG
Ga0207704_113956931	3300025938	Miscanthus Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVA
Ga0207691_1000484015	3300025940	Miscanthus Rhizosphere	MRSRAGQRVPVWLQIIVVVVFATAMVIAADAEDHCGETTAGCIVAIGKG
Ga0207668_101090551	3300025972	Switchgrass Rhizosphere	RMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG
Ga0207668_115361161	3300025972	Switchgrass Rhizosphere	GMDGYRRMRARAGQRVPVWLQIIVVVVCATAMVIAADAEDRCGATNAKCIVAIGKA
Ga0207708_102363765	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCSVGIGKG
Ga0207674_122881822	3300026116	Corn Rhizosphere	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCI
Ga0207529_1012322	3300026811	Soil	VPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG
Ga0209973_10595101	3300027252	Arabidopsis Thaliana Rhizosphere	RISGECRRMRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVGIGKG
Ga0209967_10029875	3300027364	Arabidopsis Thaliana Rhizosphere	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVGIG
Ga0207563_1011231	3300027421	Soil	MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDHCGETTAKCVVTIGKG
Ga0209970_10295822	3300027614	Arabidopsis Thaliana Rhizosphere	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAKDHCGATNAKCILAIGKA
Ga0209818_11895672	3300027637	Agricultural Soil	MRSRAGQGVPIWLQVIVVVVCATAMVIGADAEDNCGETTAKCIVAIGKG
Ga0209485_11934651	3300027691	Agricultural Soil	MRSGAGQRVPLWLQMVVVVVCATAMVIAADAEDCGETTANCVVAIDKG
Ga0209819_101463952	3300027722	Freshwater Sediment	MRSREGQRVLVWLQMIIVVVCATAMVIAADAEDYCGETTAKCIVAIGKG
Ga0209481_101707482	3300027880	Populus Rhizosphere	VPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCIVAIGKG
Ga0209486_100056313	3300027886	Agricultural Soil	MRSRAGQRVPVWLQVIVVVVCATAMVIAADAEDYCGEITAKCIVAIGKG
Ga0209486_101038572	3300027886	Agricultural Soil	MRSGAGQRVPLWLQMVAVVVCATAMVIAADAEDCGETAAKCVVAIDKG
Ga0209382_101112215	3300027909	Populus Rhizosphere	MRFRAGQRVPVWLQMIVVVVCATAMVIAADAEDYCGETTAKCIVAIGRG
Ga0209382_101473322	3300027909	Populus Rhizosphere	MRSRAGQRVPLWLQIIVVVVWATAMVIAADAEDHCGETTAKCMVAIGKG
Ga0209382_102472792	3300027909	Populus Rhizosphere	MRSRAGQRVPVWLQVIVVVVCATAMVIAADTEDYCGEITARCIVAIGQG
Ga0209382_119353791	3300027909	Populus Rhizosphere	MRSRAGQRVPVWLQMIVVVVCATAMVIAADAKNYCGETTAKCLVGIGKG
Ga0268265_101770141	3300028380	Switchgrass Rhizosphere	MRSRAGQRVPVWLQIIVVVVFATAMVIAADAEDHCGETTAGCIVAIGK
Ga0247828_101486971	3300028587	Soil	MRSRAGQRVPVWLQIIVVVVCATAMDIAADAEDHCGETTAKCVVTIGKG
Ga0310888_106601351	3300031538	Soil	MRSRAGQRVPVWLQMIVVVVCATAMVIAADAKDYCGETAKCIVASGKG
Ga0310886_100154321	3300031562	Soil	LQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG
Ga0310907_106253761	3300031847	Soil	VPVWLQIIVVVVCATAMVIAADAEDHCGETTAKCVVTIGKG
Ga0310893_101580791	3300031892	Soil	MRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGETTAGCIVAIGKG
Ga0310900_115942312	3300031908	Soil	YRRMRFRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGATNAKCIVAIGKA
Ga0310891_100515002	3300031913	Soil	VPVWLQMIIVVVCATAMVIAADAEDYCGATAKCIVGIGKG
Ga0310885_100126331	3300031943	Soil	DQCRRMRSRAGQRVPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG
Ga0310895_101996061	3300032122	Soil	MRSRAGQRVPVWLQIIVVVVCATAMVIAADADAEDHCGATNAKCIVAIGKA
Ga0364931_0060126_114_221	3300034176	Sediment	MIIVVVCATAMVIAADAEGHCGETTAKCIVAIGKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085323

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences