Metagenome / Metatranscriptome Family F085305

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085305
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	97 residues
Representative Sequence	SGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Number of Associated Samples	96
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.27 %
% of genes near scaffold ends (potentially truncated)	30.63 %
% of genes from short scaffolds (< 2000 bps)	72.97 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.099 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.820 % of family members)
Environment Ontology (ENVO)	Unclassified (22.523 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (32.432 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.32% β-sheet: 9.45% Coil/Unstructured: 73.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00072	Response_reg	33.33
PF11667	DUF3267	8.11
PF06723	MreB_Mbl	3.60
PF00127	Copper-bind	1.80
PF00042	Globin	0.90
PF00486	Trans_reg_C	0.90
PF13473	Cupredoxin_1	0.90
PF01165	Ribosomal_S21	0.90
PF02518	HATPase_c	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	3.60
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.90
COG1017	Hemoglobin-like flavoprotein	Energy production and conversion [C]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.10 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.10 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.10 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	82.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	82.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	82.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	82.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	82.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	82.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Unclassified	root	N/A	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100797554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1319	Open in IMG/M
3300000956\|JGI10216J12902_105763021	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	850	Open in IMG/M
3300000956\|JGI10216J12902_110422485	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1482	Open in IMG/M
3300001686\|C688J18823_10126598	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300002568\|C688J35102_118651816	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	581	Open in IMG/M
3300003267\|soilL1_10093318	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1974	Open in IMG/M
3300003324\|soilH2_10171166	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1162	Open in IMG/M
3300003987\|Ga0055471_10005611	All Organisms → cellular organisms → Bacteria	2447	Open in IMG/M
3300003993\|Ga0055468_10129478	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	736	Open in IMG/M
3300004145\|Ga0055489_10000620	All Organisms → cellular organisms → Bacteria → Proteobacteria	5382	Open in IMG/M
3300004145\|Ga0055489_10001746	All Organisms → cellular organisms → Bacteria	3838	Open in IMG/M
3300004282\|Ga0066599_100351335	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	895	Open in IMG/M
3300004463\|Ga0063356_100020596	All Organisms → cellular organisms → Bacteria	6159	Open in IMG/M
3300004463\|Ga0063356_100249648	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2149	Open in IMG/M
3300004479\|Ga0062595_101200459	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	673	Open in IMG/M
3300004643\|Ga0062591_101245177	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	728	Open in IMG/M
3300004778\|Ga0062383_10284084	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	789	Open in IMG/M
3300004808\|Ga0062381_10138381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	799	Open in IMG/M
3300005093\|Ga0062594_100498269	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300005339\|Ga0070660_100398279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1138	Open in IMG/M
3300005535\|Ga0070684_100547259	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1074	Open in IMG/M
3300005539\|Ga0068853_101109707	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	763	Open in IMG/M
3300005617\|Ga0068859_102177948	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	612	Open in IMG/M
3300005713\|Ga0066905_100811856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	812	Open in IMG/M
3300005873\|Ga0075287_1013252	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	996	Open in IMG/M
3300005884\|Ga0075291_1024249	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	741	Open in IMG/M
3300006845\|Ga0075421_100076801	All Organisms → cellular organisms → Bacteria	4215	Open in IMG/M
3300006845\|Ga0075421_100467138	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300006880\|Ga0075429_101945510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	509	Open in IMG/M
3300007004\|Ga0079218_10229649	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300009012\|Ga0066710_102431976	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	759	Open in IMG/M
3300009100\|Ga0075418_12366559	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	579	Open in IMG/M
3300009147\|Ga0114129_10441282	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1709	Open in IMG/M
3300009157\|Ga0105092_10254715	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	986	Open in IMG/M
3300009815\|Ga0105070_1130630	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	510	Open in IMG/M
3300010375\|Ga0105239_13262658	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	528	Open in IMG/M
3300010400\|Ga0134122_11698824	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	659	Open in IMG/M
3300011333\|Ga0127502_10924659	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	617	Open in IMG/M
3300012188\|Ga0136618_10415859	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	580	Open in IMG/M
3300012204\|Ga0137374_10566257	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	871	Open in IMG/M
3300012212\|Ga0150985_104806509	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1418	Open in IMG/M
3300012212\|Ga0150985_121210511	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	572	Open in IMG/M
3300012678\|Ga0136615_10030761	All Organisms → cellular organisms → Bacteria → Proteobacteria	2762	Open in IMG/M
3300012681\|Ga0136613_10347561	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	817	Open in IMG/M
3300012910\|Ga0157308_10244942	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	629	Open in IMG/M
3300012929\|Ga0137404_11682558	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	589	Open in IMG/M
3300012955\|Ga0164298_10052628	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1964	Open in IMG/M
3300014254\|Ga0075312_1031339	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	964	Open in IMG/M
3300014272\|Ga0075327_1185026	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	660	Open in IMG/M
3300014320\|Ga0075342_1089768	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	790	Open in IMG/M
3300015200\|Ga0173480_11058740	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	538	Open in IMG/M
3300015201\|Ga0173478_10775458	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	523	Open in IMG/M
3300015372\|Ga0132256_102088943	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	672	Open in IMG/M
3300017787\|Ga0183260_10296969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1100	Open in IMG/M
3300017789\|Ga0136617_10024135	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	5421	Open in IMG/M
3300017997\|Ga0184610_1311815	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	517	Open in IMG/M
3300018059\|Ga0184615_10000784	All Organisms → cellular organisms → Bacteria	17179	Open in IMG/M
3300018063\|Ga0184637_10053005	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2477	Open in IMG/M
3300018076\|Ga0184609_10187257	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	962	Open in IMG/M
3300018076\|Ga0184609_10208590	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	911	Open in IMG/M
3300018422\|Ga0190265_10030177	All Organisms → cellular organisms → Bacteria	4489	Open in IMG/M
3300018422\|Ga0190265_10281183	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1726	Open in IMG/M
3300018422\|Ga0190265_10412843	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1450	Open in IMG/M
3300018429\|Ga0190272_11901533	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	626	Open in IMG/M
3300018466\|Ga0190268_10742307	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	730	Open in IMG/M
3300018466\|Ga0190268_11245755	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	621	Open in IMG/M
3300019377\|Ga0190264_10563717	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	801	Open in IMG/M
3300019487\|Ga0187893_10099494	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2570	Open in IMG/M
3300020146\|Ga0196977_1009294	All Organisms → cellular organisms → Bacteria	2426	Open in IMG/M
3300021073\|Ga0210378_10018687	All Organisms → cellular organisms → Bacteria	2817	Open in IMG/M
3300022883\|Ga0247786_1110692	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	599	Open in IMG/M
3300025559\|Ga0210087_1005651	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2833	Open in IMG/M
3300025932\|Ga0207690_10027255	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	3610	Open in IMG/M
3300025933\|Ga0207706_11231175	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	621	Open in IMG/M
3300025945\|Ga0207679_10806039	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	856	Open in IMG/M
3300025959\|Ga0210116_1008473	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1841	Open in IMG/M
3300025971\|Ga0210102_1000159	All Organisms → cellular organisms → Bacteria	20114	Open in IMG/M
3300025996\|Ga0208777_1011627	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	746	Open in IMG/M
3300026095\|Ga0207676_12588941	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	504	Open in IMG/M
3300026142\|Ga0207698_12745796	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	501	Open in IMG/M
3300027695\|Ga0209966_1135323	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	570	Open in IMG/M
3300027722\|Ga0209819_10173936	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	752	Open in IMG/M
3300027778\|Ga0209464_10119674	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	911	Open in IMG/M
3300027909\|Ga0209382_10065227	All Organisms → cellular organisms → Bacteria	4309	Open in IMG/M
3300028597\|Ga0247820_11367029	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	515	Open in IMG/M
3300028793\|Ga0307299_10295305	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	609	Open in IMG/M
3300028809\|Ga0247824_11091329	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	509	Open in IMG/M
3300030006\|Ga0299907_10100020	All Organisms → cellular organisms → Bacteria	2377	Open in IMG/M
3300030006\|Ga0299907_11327633	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	510	Open in IMG/M
3300030619\|Ga0268386_10093678	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2330	Open in IMG/M
3300030619\|Ga0268386_10185152	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1568	Open in IMG/M
3300030620\|Ga0302046_10080966	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2639	Open in IMG/M
3300030620\|Ga0302046_10106982	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2282	Open in IMG/M
3300031093\|Ga0308197_10171802	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	715	Open in IMG/M
3300031094\|Ga0308199_1078292	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	695	Open in IMG/M
3300031229\|Ga0299913_10179943	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2091	Open in IMG/M
3300031547\|Ga0310887_10770006	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	602	Open in IMG/M
3300031548\|Ga0307408_100111535	All Organisms → cellular organisms → Bacteria	2102	Open in IMG/M
3300031548\|Ga0307408_100986970	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	775	Open in IMG/M
3300031716\|Ga0310813_10061943	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2794	Open in IMG/M
3300031731\|Ga0307405_10582767	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	910	Open in IMG/M
3300031824\|Ga0307413_10243163	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1330	Open in IMG/M
3300031949\|Ga0214473_10210374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2248	Open in IMG/M
3300032002\|Ga0307416_100060258	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	3090	Open in IMG/M
3300032144\|Ga0315910_10019724	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	5023	Open in IMG/M
3300033417\|Ga0214471_11277406	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	556	Open in IMG/M
3300033550\|Ga0247829_11384372	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	581	Open in IMG/M
3300033550\|Ga0247829_11546166	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	547	Open in IMG/M
3300033812\|Ga0364926_059205	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	753	Open in IMG/M
3300034165\|Ga0364942_0002111	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	5627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.58%
Host-Associated	Host-Associated	23.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.05%
Plants	Host-Associated → Plants	23.42%
Aquatic	Environmental → Aquatic	22.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.32%
Freshwater	Environmental → Aquatic → Freshwater	11.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.11%
Marine	Environmental → Aquatic → Marine	6.31%
Sediment	Environmental → Aquatic → Sediment	4.50%
Floodplain	Environmental → Terrestrial → Floodplain	1.80%
Cave	Environmental → Terrestrial → Cave	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.41%
Ice	Environmental → Aquatic → Freshwater → Ice	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.50%
Loam	Environmental → Terrestrial → Soil → Loam	3.60%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.70%
Sand	Environmental → Terrestrial → Soil → Sand	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%
Pond	Environmental → Aquatic → Freshwater → Pond	0.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.81%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.70%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.80%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.90%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.90%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.82%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.41%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.60%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.70%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.70%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.70%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.80%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.90%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.90%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300005884	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012188	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025959	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025971	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025996	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301 (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1007975542	3300000956	Soil	VAPSGRKRGKPVEPRGREARLRSEFGYLYPGIDAGSWTPVESLINQVVTLLYGDPSKSGVITGSRLLREDHFEFRGASPRPQGWPDGLSRMSDASAAPKDTR*
JGI10216J12902_1057630212	3300000956	Soil	VTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPAKSGVITGERLLREDHFEFRGQSSRPTGWPSSLSRMSDAAAKPPGKE*
JGI10216J12902_1104224852	3300000956	Soil	VASSGRKRGKPMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAKSGVITGGRLLREDHFEFRGASPRPKGWPDGLSRMSDASAAPKDSR*
C688J18823_101265983	3300001686	Soil	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEPGSWTPVESLINQVVTLLYGDSSKSGVITGSRLLREDHFEFRGSSPRPKGWPEELSRMSDASAAPKDGH*
C688J35102_1186518161	3300002568	Soil	VASSGRKRGKPVEPRGREARLRSEFGYLYPGIDAGTWTPVESLINQVVTLLYGDPSQSGVITGSRLLREDHFEFRGASPRPQGWPDGLSRMSDASAAPKDAR*
soilL1_100933185	3300003267	Sugarcane Root And Bulk Soil	VAGSGRKRGKAIEPRGREARLRAEFGYLYPGIAAGEWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGRSPRPEGWPDGLSRMSDASAAPKDGG*
soilH2_101711662	3300003324	Sugarcane Root And Bulk Soil	VAGSGRKRGKAIEPRGREARLRAEFGYLYPGIAAGEWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGRSPRPEGWPDGLSRMSDASAAPKDGG
Ga0055471_100056113	3300003987	Natural And Restored Wetlands	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0055468_101294782	3300003993	Natural And Restored Wetlands	VNARQSGPARSAQARGREARLRADFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPANSGRITGARLLRDDHFEFRGASPRPEGWPERLTRMSDASAPPDPS*
Ga0055489_100006202	3300004145	Natural And Restored Wetlands	MTTPRGRQARLRAEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPSQSGVITGERLLREDHFEFRGESTRPTGWPSALSRMSDAAAKPRADGR*
Ga0055489_100017464	3300004145	Natural And Restored Wetlands	MAPRGREARLRSEFGYLYPGIEPGSWVSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPEGWPSDLSRMSDASAEPKDGK*
Ga0066599_1003513351	3300004282	Freshwater	LRADFAYLYPGIDETAWMPVEALINRVVTMLYGDPGSSGRITGARLLREDHFEFRGASPRPEGWPSGLSRMSDAAAPPDR*
Ga0063356_1000205967	3300004463	Arabidopsis Thaliana Rhizosphere	MTTPRGRQARLRPEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPARSGVITGERLLREDHFEFRGESHRPSGWPSTMSRMSDAAAKPRAEDR*
Ga0063356_1002496483	3300004463	Arabidopsis Thaliana Rhizosphere	VAGSARKRGKSIEPRGREARLKSEFGYLYPGIEAGEWVPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGRSPRPAGWPKGLSRMSDASAAPKDGR*
Ga0062595_1012004592	3300004479	Soil	VASSGRKRGKPMESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR*
Ga0062591_1012451771	3300004643	Soil	EPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0062383_102840843	3300004778	Wetland Sediment	TAEMTTPRGRQAKLRAEHAYLYPGIDADVWTPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSHRPTGWPSTMSRMSDAATKPRADDR*
Ga0062381_101383813	3300004808	Wetland Sediment	MTTPRGRQAKLRAEHAYLYPGIDADVWTPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSHRPTGWPSTMSRMSDAATKPRADD
Ga0062594_1004982691	3300005093	Soil	MLVHPDDVRLCDRQEISDAGGAPVTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPAKSGVITGERLLRDDHFEFRGQSSRPSGWPSSLSRMSDAAAKPPGKE*
Ga0070660_1003982792	3300005339	Corn Rhizosphere	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0070684_1005472592	3300005535	Corn Rhizosphere	VASSGRKRGKPMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASA
Ga0068853_1011097072	3300005539	Corn Rhizosphere	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGQ*
Ga0068859_1021779481	3300005617	Switchgrass Rhizosphere	GRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0066905_1008118562	3300005713	Tropical Forest Soil	VASSGRKRGKAMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGW
Ga0075287_10132521	3300005873	Rice Paddy Soil	VAGSARKRGKAIEPRGREARLRSEFGYLYPGIEAGAWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGSSPRPQGWPDSLSRMSDASAAPKDER*
Ga0075291_10242492	3300005884	Rice Paddy Soil	GKAIEPRGREARLRTEFGYLYPGIEAGAWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGSSPRPQGWPDSLSRMSDASAAPKDER*
Ga0075421_1000768015	3300006845	Populus Rhizosphere	VSARQSAHAKPVQVRGREARLRADFAYLYPGLDSSDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG*
Ga0075421_1004671383	3300006845	Populus Rhizosphere	VSARQSGPGRSPEARGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPQGWPERLTRMSDASTPPDPS*
Ga0075429_1019455101	3300006880	Populus Rhizosphere	LRADFAYLYPGLDSSDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG*
Ga0079218_102296493	3300007004	Agricultural Soil	VSARQSGPAKPAQARGREARLKTDFAYLYPGLESADWTPVEVLINRVVTLLYGDPANSGRITGARLLRDDHFEFRGASPRPEGWPARLTRMSDASAPPDPS*
Ga0066710_1024319761	3300009012	Grasslands Soil	MKSKASEVRGREARLRADFDYLYPGVQANTWVPVERLIHDVVTLLYGDGSKSGVITGERLLREDHFEFRGLSPRPLGLPPNRSRVSDSGAFPASDKKSPD
Ga0075418_123665592	3300009100	Populus Rhizosphere	VNARQSGAGRPAPARGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGARLLRDDHFEFRGASARPEGWPERLTRMSDASAEPDPS*
Ga0114129_104412823	3300009147	Populus Rhizosphere	MSSGPKEARGRQARLRSDFDYLYPGIQANTWLPVERLVQDVITLLYGDAGKSGGITGERLLREDHFEFRGSSPRPKGLPPHRSRLNDSSAVRRSDKKS*
Ga0105092_102547151	3300009157	Freshwater Sediment	VTPPRGRQARLKAEHAYLYPGIEASSWMPVETLIHRVVTLLYGDPAKSGVITGERLLREDHFEFRGQSSRPTGWPTSLSRMSDAAAKPPGKDGSGKSA*
Ga0105070_11306301	3300009815	Groundwater Sand	VSARQPAHANKPAPTRGREARLKADFAYLYPGLDATDWTPVETLINRIVTLLYGDPANSGRITGARLLREDHFEFRGVSPRPEGWPAGLTRMSDAASPPDRS*
Ga0105239_132626582	3300010375	Corn Rhizosphere	VEPRGREARLRSEFGYLYPGIEPGSWTPVESLINQVVTLLYGDASKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRM
Ga0134122_116988242	3300010400	Terrestrial Soil	MSSGPKEARGRQARLRPDFDYLYPGIPVNTWFPVERLIQDVVTLLYGDAGKSGGIKGERLLREDHFEFRGSSRRPKGLPPNRSRLNDSSAVRRSDKKS*
Ga0127502_109246592	3300011333	Soil	VSARQSSQGSAAESRGREARLKSDFAYLYPGLDAGVWTPVEVLINRVVTLLYGDPGNSGRITGARLLREDHFEFRGASPRPDGWPTGLSRMSDAAAPPDRG*
Ga0136618_104158592	3300012188	Polar Desert Sand	MTQRRGREARLKADHGYLYPGIPADTWTPVEVLINRVVTLLYGDRSKSGVITGERLLREDHFDFRGASSRPRGLPADLSRLSDAAADPD*
Ga0137374_105662571	3300012204	Vadose Zone Soil	METRGREARLRQEFDYLYPGIPDSTWMPVEVLLHRVATLLYGDPSKSGVITGERLLRQDHFEFRGASPRPEGLPPDLSRMSDSGLEPKG*
Ga0150985_1048065092	3300012212	Avena Fatua Rhizosphere	VEPRGREARLRSEFGYLYPGIDAGTWTPVESLINQVVTLLYGDPSQSGVITGGRLLREDHFEFRGASPRPQGWPDGLSRMSDASAAPKDAR*
Ga0150985_1212105112	3300012212	Avena Fatua Rhizosphere	LSIRTTFRLCDRQEISDAGGAPVTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSSRLTGWPSSLSRMSDAAAKSPGKE*
Ga0136615_100307613	3300012678	Polar Desert Sand	VTSPRGRQARLRAEHAYLYPGLEPAVWMPVETLIHRVVTLLYGDPAKSGVITGERLLRGDHFEFRGQSSRPTGWPSALSRMSDAAAKPRGSDESDSQG*
Ga0136613_103475611	3300012681	Polar Desert Sand	MTQRRGREARLKADHGYLYPGIPADTWTPVEVLINRVVTLLYGDRSKSGVITGERLLREDHFEFRGASYRPRGLPADLSRLSDAAADPD*
Ga0157308_102449421	3300012910	Soil	KAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0137404_116825582	3300012929	Vadose Zone Soil	VNDPRGREARLRPEYDYLYPDIEPGAWHPVEVLINQVVTMLYGDRTRSGVITGERLLRDDHFEFRGESPRPAGLPPDLSRMS
Ga0164298_100526284	3300012955	Soil	MESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR*
Ga0075312_10313392	3300014254	Natural And Restored Wetlands	VSARQSGPGRSPETRGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPEGWPERLTRMSDASTPPEPS*
Ga0075327_11850261	3300014272	Natural And Restored Wetlands	LRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPEGWPERLTRMSDASTPPEPS*
Ga0075342_10897681	3300014320	Natural And Restored Wetlands	MAPRGREARLRSEFGYLYPGIEPGSWVSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPPPDGWPPDLSRMSDASADQQ
Ga0173480_110587401	3300015200	Soil	VEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDA
Ga0173478_107754581	3300015201	Soil	VSARKSGPGQSPETRGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS*
Ga0132256_1020889432	3300015372	Arabidopsis Rhizosphere	MLVHPDDVRLRDRQEISDAGGAPVTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPAKSGVITGERLLRDDHFEFRGQSSRPSGWPSSLSRMSDAAAKPPGKE*
Ga0183260_102969694	3300017787	Polar Desert Sand	MTQRRGREARLKADHGYLYPGIPADNWTPVEVMINRMVTLLYGDRSKSGVITGERLLREDHFDFRGASSRPRGLPADLSRLSDAAADPD
Ga0136617_100241358	3300017789	Polar Desert Sand	MTQRRGREARLKADHGYLYPGIPADTWTPVEVLINRVVTLLYGDRSKSGVITGERLLREDHFDFRGASSRPRGLPADLSRLSDAAADPD
Ga0184610_13118151	3300017997	Groundwater Sediment	VSARQSAHAKPAQLRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAGPPDKG
Ga0184615_1000078412	3300018059	Groundwater Sediment	VSTRQTAPAKPARTRGREARLRTDFAYLYPGIDSGAWTPVEILINRVVTLLYGDAANSGRITGARLLREDHFEFRGASPRPEGWPSGLTRMSDAAAPPDRG
Ga0184637_100530054	3300018063	Groundwater Sediment	VSARQSAHAKPAQLRGREARLKADFEYLYPGLDSTGWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASARPEGWPAGLTRMSDAAAPPDKG
Ga0184609_101872572	3300018076	Groundwater Sediment	VSARQSAQAKPAQMRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAASPPDRG
Ga0184609_102085901	3300018076	Groundwater Sediment	PGSVVTTAANSWSHRLSIWRRSRVSARQSAQAKPTQARGREAKLRTDFAYLYPGIDSSAWTPVEILINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPARLTRMSDAAAPPDRG
Ga0190265_100301774	3300018422	Soil	VSARQSGPAKPAQARGREARLRTDFGYLYPGIDSGAWMPVESLINRVVTLLYGDPGNSGRITGARLLRQDHFEFRGASPRPEGWPVGLTRMSDAAAPPDRR
Ga0190265_102811831	3300018422	Soil	VSARQSGPAKPAQARGREARLKTEFAYLYPGLESTAWTPVEALINQVVTLLYGDPANAGRITGARLLREDHFEFRGASPRPEGWPEGLTRMSDAAAPPDRS
Ga0190265_104128432	3300018422	Soil	VSARQSGPAKPAQTRGREARLKSDFAYLYPGLETTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPERS
Ga0190272_119015331	3300018429	Soil	VSARQSAQAKPAPARGREAKLKTDFAYLYPGIDSSAWTPVEDLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAASPPDRG
Ga0190268_107423072	3300018466	Soil	MTTPRGRQARLRPEHAYLYPGLDAEVWTPVETLIHRVVTMLYGDPSKSGVITGERLLREDHFEFRGESHRPSGWPSTMSRMSDAAAKPRADER
Ga0190268_112457551	3300018466	Soil	PPRGRQAKLRAEHAYLYPGIEANVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGQSHRPTGWPSTMSRMSDAAAKPRADER
Ga0190264_105637171	3300019377	Soil	VSARQSGPAKPAQTRGREARLKSDFAYLYPGLETTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRM
Ga0187893_100994941	3300019487	Microbial Mat On Rocks	VNPRQPAQAKPAQTRGREARVRADFAYLYPGIESAAWTPVEVLINRVVTLLYGDAAKAGRITGGRLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPDQG
Ga0196977_10092943	3300020146	Soil	MTPPRGRQARLRAEHAYLYPGLEAGVWTPVETLIHRVVTMLYGDPSKSGVITGERLLREDHFEFRGESHRPAGWPSTMSRMSDAAAKPRADDR
Ga0210378_100186875	3300021073	Groundwater Sediment	VSARQSAHAKPAQPRGREARLRADFAYLYPGLDASAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDKS
Ga0247786_11106922	3300022883	Soil	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0210087_10056513	3300025559	Natural And Restored Wetlands	VSARQSGPGRSPETRGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPEGWPERLTRMSDASTPPEPS
Ga0207690_100272554	3300025932	Corn Rhizosphere	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0207706_112311752	3300025933	Corn Rhizosphere	KRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0207679_108060391	3300025945	Corn Rhizosphere	SGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0210116_10084732	3300025959	Natural And Restored Wetlands	MTTPRGRQARLRAEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPSQSGVITGERLLREDHFEFRGESTRPTGWPSALSRMSDAAAKPRADGR
Ga0210102_100015917	3300025971	Natural And Restored Wetlands	MAPRGREARLRSEFGYLYPGIEPGSWVSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPEGWPSDLSRMSDASAEPKDGK
Ga0208777_10116271	3300025996	Rice Paddy Soil	VAGSARKRGKAIEPRGREARLRSEFGYLYPGIEAGAWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGSSPRPQGWPDSLSRMSDASAAPKDER
Ga0207676_125889412	3300026095	Switchgrass Rhizosphere	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPK
Ga0207698_127457961	3300026142	Corn Rhizosphere	VASSGRKRGKPMESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLRGDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR
Ga0209966_11353232	3300027695	Arabidopsis Thaliana Rhizosphere	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDG
Ga0209819_101739361	3300027722	Freshwater Sediment	PPRGRQARLKAEHAYLYPGIEASSWMPVETLIHRVVTLLYGDPAKSGVITGERLLREDHFEFRGQSSRPTGWPTSLSRMSDAAAKPPGKDGSGKSA
Ga0209464_101196741	3300027778	Wetland Sediment	MTTPRGRQAKLRAEHAYLYPGIDADVWTPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSHRPTGWPSTSTRRSFWICSAAALPMRTGPSPR
Ga0209382_100652273	3300027909	Populus Rhizosphere	VSARQSAHAKPVQVRGREARLRADFAYLYPGLDSSDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG
Ga0247820_113670292	3300028597	Soil	ARQSGPGRSPETRGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS
Ga0307299_102953052	3300028793	Soil	MEPRGREARLRSEFDYLYPGVPDSTWMPVEALLHRVATLLYGDPSKSGVITGERLLREDHFEFRGASARPEGLPPDLSRMSDSGLEPKG
Ga0247824_110913291	3300028809	Soil	IWRRSRVSARKSGPGQSPETRGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS
Ga0299907_101000204	3300030006	Soil	VSARQTGPAKPAQARGREARLKTDFAYLYPGLESTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPDQG
Ga0299907_113276331	3300030006	Soil	VSARQSAQAKPAQARGREARLRTDFAYLYPGIDASAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG
Ga0268386_100936783	3300030619	Soil	VSARQAGPAKPAQARGREARLRPDFAYLYPGIDSGWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPSGLTRMSDAAAPPDRG
Ga0268386_101851523	3300030619	Soil	MTTPRGRQARLREEHAYLYPGIDAATWTPVETLIHRVVTMLYGDPSRSGVITGERLLREDHFEFRGESSRPSGWPSALSRMSDAAAKPRAEDR
Ga0302046_100809662	3300030620	Soil	VSGRQSAHAKPARGREARLRADFAYLYPGLDSTDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAAPPERG
Ga0302046_101069821	3300030620	Soil	VSARQSAPAKPAQLRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAGPPDKG
Ga0308197_101718021	3300031093	Soil	SLGERTTVMEPRGREARLRSEFDYLYPGVPDNTWMPVEALLHRVATLLYGDPSKSGVITGERLLREDHFEFRGASARPEGLPPDLSRMSDSGLEPKG
Ga0308199_10782922	3300031094	Soil	TVMEPRGREARLRSEFDYLYPGVPDSTWMPVEALLHRVATLLYGDPSKSGVITGERLLREDHFEFRGASARPEGLPPDLSRMSDSGLEPKG
Ga0299913_101799434	3300031229	Soil	VSARQTGPAKPAQVRGREARLKTDFAYLYPGLETTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPDRT
Ga0310887_107700062	3300031547	Soil	VASSGRKRGKAMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAQSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAAPKDSR
Ga0307408_1001115356	3300031548	Rhizosphere	MTTPRGRQARLRAEHAYLYPGIEPDVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGDSHRPTGWPSSMSRMSDAAAKPRAEDR
Ga0307408_1009869702	3300031548	Rhizosphere	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGTWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0310813_100619433	3300031716	Soil	VASSGRKRGKPMESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR
Ga0307405_105827672	3300031731	Rhizosphere	VSARQSGPAKSAQARGREARLKTDFAYLYPGLESADWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSERPEGWPEGLTRMSDAAAPPDRS
Ga0307413_102431632	3300031824	Rhizosphere	MTTPRGRQARLLAEHAYLYPGIEPDVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGDSHRPTGWPSSMSRMSDAAAKPRAEDR
Ga0214473_102103743	3300031949	Soil	MTSPRGRQARLRTDHAYLYPGIEAGVWTPVETLIHRVVTLLYGDPSKSGVITGDRLLREDHFEFRGESSRPLGWPSALSRMSDAAAKPTTEDR
Ga0307416_1000602584	3300032002	Rhizosphere	MTTPRGRQARLRAEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGDSHRPTGWPSSMSRMSDAAAKPRAEDR
Ga0315910_100197243	3300032144	Soil	VNARQSGAGRPAPARGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGARLLRDDHFEFRGASARPEGWPERLTRMSDASAEPDPS
Ga0307471_1032276662	3300032180	Hardwood Forest Soil	MSSGPKEARGRQARLRPDFDYLYPGIPVNTWFPVERLIQDVVTLLYGDAGKSGGITGERLLREDHFEFRGSSPRPKGLPPNRS
Ga0214471_112774062	3300033417	Soil	TAANSWSNRLSIWRRSRVSARQSAHAKPAQLRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASARPEGWPAGLTRMSDAAAPPDKG
Ga0247829_113843722	3300033550	Soil	VSARKSGPGQSPETRGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS
Ga0247829_115461662	3300033550	Soil	VASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSR
Ga0364926_059205_211_516	3300033812	Sediment	VSARQSAQAKPAQTRGREARLKTDFAYLYPGIESGAWTPVERLISRVVTLLYGDPVKSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAAPPDRS
Ga0364942_0002111_4313_4618	3300034165	Sediment	VSTRQTGPAKPARTRGREARLRTDFAYLYPGIDSGAWTPVEILINRVVTLLYGDAANSGRITGARLLREDHFEFRGASPRPEGWPSGLTRMSDAAAPPDRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085305

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences