Metagenome / Metatranscriptome Family F085301

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085301
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	42 residues
Representative Sequence	MKTILSALVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHAN
Number of Associated Samples	45
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.15 %
% of genes near scaffold ends (potentially truncated)	22.52 %
% of genes from short scaffolds (< 2000 bps)	81.08 %
Associated GOLD sequencing projects	41
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (72.072 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (51.351 % of family members)
Environment Ontology (ENVO)	Unclassified (63.063 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.568 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF03401	TctC	4.72
PF06945	DUF1289	3.77
PF10025	DUF2267	1.89
PF03466	LysR_substrate	0.94
PF13440	Polysacc_synt_3	0.94
PF07883	Cupin_2	0.94
PF08241	Methyltransf_11	0.94
PF02518	HATPase_c	0.94
PF13358	DDE_3	0.94
PF13414	TPR_11	0.94
PF01408	GFO_IDH_MocA	0.94
PF02666	PS_Dcarbxylase	0.94
PF00011	HSP20	0.94
PF13545	HTH_Crp_2	0.94
PF10517	DM13	0.94
PF00816	Histone_HNS	0.94
PF02878	PGM_PMM_I	0.94
PF01943	Polysacc_synt	0.94
PF13847	Methyltransf_31	0.94
PF00497	SBP_bac_3	0.94
PF00106	adh_short	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.72
COG3313	Predicted Fe-S protein YdhL, DUF1289 family	General function prediction only [R]	3.77
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.94
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0688	Phosphatidylserine decarboxylase	Lipid transport and metabolism [I]	0.94
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.94
COG2916	DNA-binding protein H-NS	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
All Organisms	root	All Organisms	27.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
cellular organisms	root	All Organisms → cellular organisms	27.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.22 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.71 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.60 %
Stappiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae	1.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Stappia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia	1.80 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.90 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.90 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Stappia albiluteola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia albiluteola	1.80 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.90 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.90 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.07 %
Stappia albiluteola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia albiluteola	1.80 %
Hyphomicrobium sp. 99	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	0.90 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.90 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_100036017	All Organisms → cellular organisms → Bacteria	2896	Open in IMG/M
3300004114\|Ga0062593_101446830	Not Available	737	Open in IMG/M
3300004114\|Ga0062593_101642063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300004157\|Ga0062590_102864296	Not Available	516	Open in IMG/M
3300004480\|Ga0062592_100032043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2611	Open in IMG/M
3300004480\|Ga0062592_102573882	Not Available	513	Open in IMG/M
3300005045\|Ga0071328_107925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3852	Open in IMG/M
3300005045\|Ga0071328_122998	Not Available	2307	Open in IMG/M
3300005045\|Ga0071328_132721	Not Available	5107	Open in IMG/M
3300005045\|Ga0071328_132721	Not Available	5107	Open in IMG/M
3300005045\|Ga0071328_149748	Not Available	2189	Open in IMG/M
3300005045\|Ga0071328_169661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2549	Open in IMG/M
3300005093\|Ga0062594_100982991	Not Available	809	Open in IMG/M
3300005328\|Ga0070676_10383788	Not Available	973	Open in IMG/M
3300005354\|Ga0070675_100510977	Not Available	1083	Open in IMG/M
3300005440\|Ga0070705_100508047	Not Available	916	Open in IMG/M
3300005455\|Ga0070663_100537285	Not Available	975	Open in IMG/M
3300005549\|Ga0070704_101249870	Not Available	678	Open in IMG/M
3300005719\|Ga0068861_101282859	Not Available	711	Open in IMG/M
3300006845\|Ga0075421_100256662	All Organisms → cellular organisms → Bacteria	2141	Open in IMG/M
3300006845\|Ga0075421_100346015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1797	Open in IMG/M
3300006845\|Ga0075421_100503099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia albiluteola	1439	Open in IMG/M
3300006845\|Ga0075421_100522401	All Organisms → cellular organisms → Bacteria → Proteobacteria	1407	Open in IMG/M
3300006847\|Ga0075431_100101953	All Organisms → cellular organisms → Bacteria → Proteobacteria	2962	Open in IMG/M
3300006847\|Ga0075431_102173416	Not Available	509	Open in IMG/M
3300007004\|Ga0079218_13371769	Not Available	541	Open in IMG/M
3300009148\|Ga0105243_10716940	Not Available	977	Open in IMG/M
3300009148\|Ga0105243_11156702	Not Available	785	Open in IMG/M
3300009157\|Ga0105092_10187459	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300009157\|Ga0105092_10705484	Not Available	587	Open in IMG/M
3300010371\|Ga0134125_10532944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300010400\|Ga0134122_10943596	Not Available	839	Open in IMG/M
3300010403\|Ga0134123_11114792	Not Available	813	Open in IMG/M
3300010403\|Ga0134123_12087189	Not Available	627	Open in IMG/M
3300012892\|Ga0157294_10123182	Not Available	692	Open in IMG/M
3300012910\|Ga0157308_10273387	Not Available	607	Open in IMG/M
3300014326\|Ga0157380_10565451	Not Available	1118	Open in IMG/M
3300015170\|Ga0120098_1069731	Not Available	522	Open in IMG/M
3300015200\|Ga0173480_10882188	Not Available	579	Open in IMG/M
3300015200\|Ga0173480_10929003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300018076\|Ga0184609_10549705	Not Available	521	Open in IMG/M
3300018422\|Ga0190265_10179534	All Organisms → cellular organisms → Bacteria	2106	Open in IMG/M
3300018422\|Ga0190265_10195819	Not Available	2026	Open in IMG/M
3300018422\|Ga0190265_10310616	Not Available	1650	Open in IMG/M
3300018422\|Ga0190265_10619028	Not Available	1202	Open in IMG/M
3300018422\|Ga0190265_11118016	Not Available	908	Open in IMG/M
3300018422\|Ga0190265_11274294	Not Available	852	Open in IMG/M
3300018422\|Ga0190265_11442779	Not Available	802	Open in IMG/M
3300018422\|Ga0190265_11917927	Not Available	699	Open in IMG/M
3300018422\|Ga0190265_11924149	Not Available	698	Open in IMG/M
3300018422\|Ga0190265_12161082	Not Available	660	Open in IMG/M
3300018422\|Ga0190265_12590707	Not Available	605	Open in IMG/M
3300018422\|Ga0190265_13047016	Not Available	559	Open in IMG/M
3300018429\|Ga0190272_10018512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3574	Open in IMG/M
3300018429\|Ga0190272_10019333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3515	Open in IMG/M
3300018429\|Ga0190272_10092811	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300018429\|Ga0190272_10151226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1598	Open in IMG/M
3300018429\|Ga0190272_10234538	Not Available	1361	Open in IMG/M
3300018429\|Ga0190272_10260770	Not Available	1310	Open in IMG/M
3300018429\|Ga0190272_10273410	Not Available	1287	Open in IMG/M
3300018429\|Ga0190272_10415591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1105	Open in IMG/M
3300018429\|Ga0190272_10463729	Not Available	1061	Open in IMG/M
3300018429\|Ga0190272_10471608	Not Available	1055	Open in IMG/M
3300018429\|Ga0190272_10795158	Not Available	870	Open in IMG/M
3300018429\|Ga0190272_10795158	Not Available	870	Open in IMG/M
3300018429\|Ga0190272_10986828	Not Available	802	Open in IMG/M
3300018429\|Ga0190272_11203699	Not Available	744	Open in IMG/M
3300018429\|Ga0190272_11345168	Not Available	714	Open in IMG/M
3300018429\|Ga0190272_11404865	Not Available	702	Open in IMG/M
3300018429\|Ga0190272_11428730	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300018429\|Ga0190272_11638258	Not Available	662	Open in IMG/M
3300018429\|Ga0190272_11720245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	650	Open in IMG/M
3300018429\|Ga0190272_11792043	Not Available	640	Open in IMG/M
3300018429\|Ga0190272_11795238	Not Available	640	Open in IMG/M
3300018429\|Ga0190272_11830733	Not Available	635	Open in IMG/M
3300018429\|Ga0190272_11892909	Not Available	627	Open in IMG/M
3300018429\|Ga0190272_12238127	Not Available	587	Open in IMG/M
3300018429\|Ga0190272_13348865	Not Available	500	Open in IMG/M
3300018432\|Ga0190275_11697150	Not Available	710	Open in IMG/M
3300018432\|Ga0190275_12200552	Not Available	630	Open in IMG/M
3300018466\|Ga0190268_10125581	Not Available	1255	Open in IMG/M
3300018466\|Ga0190268_10125581	Not Available	1255	Open in IMG/M
3300018466\|Ga0190268_10125581	Not Available	1255	Open in IMG/M
3300018469\|Ga0190270_10494925	All Organisms → cellular organisms → Bacteria → Proteobacteria	1163	Open in IMG/M
3300018469\|Ga0190270_10499502	Not Available	1159	Open in IMG/M
3300018469\|Ga0190270_12769943	Not Available	553	Open in IMG/M
3300018476\|Ga0190274_10045562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3128	Open in IMG/M
3300018476\|Ga0190274_10117829	All Organisms → cellular organisms → Bacteria	2160	Open in IMG/M
3300019356\|Ga0173481_10438341	Not Available	649	Open in IMG/M
3300019356\|Ga0173481_10481168	Not Available	628	Open in IMG/M
3300019360\|Ga0187894_10142089	Not Available	1229	Open in IMG/M
3300019360\|Ga0187894_10221610	Not Available	911	Open in IMG/M
3300019377\|Ga0190264_10054645	All Organisms → cellular organisms → Bacteria → Proteobacteria	1631	Open in IMG/M
3300019377\|Ga0190264_10504588	Not Available	829	Open in IMG/M
3300022694\|Ga0222623_10197907	Not Available	780	Open in IMG/M
3300022694\|Ga0222623_10197907	Not Available	780	Open in IMG/M
3300023266\|Ga0247789_1086361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	613	Open in IMG/M
3300025893\|Ga0207682_10637736	Not Available	501	Open in IMG/M
3300025907\|Ga0207645_10162483	Not Available	1461	Open in IMG/M
3300025923\|Ga0207681_11718398	Not Available	524	Open in IMG/M
3300025937\|Ga0207669_11584729	Not Available	559	Open in IMG/M
3300025942\|Ga0207689_10769080	Not Available	813	Open in IMG/M
3300026118\|Ga0207675_101368834	Not Available	728	Open in IMG/M
3300027909\|Ga0209382_10113988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3156	Open in IMG/M
3300027909\|Ga0209382_10138775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2825	Open in IMG/M
3300027909\|Ga0209382_10314902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia albiluteola	1762	Open in IMG/M
3300033551\|Ga0247830_11386259	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300034665\|Ga0314787_044070	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	717	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.18%
Host-Associated	Host-Associated	19.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.68%
Plants	Host-Associated → Plants	19.82%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.12%
Sediment	Environmental → Aquatic → Sediment	2.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.70%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Cave	Environmental → Terrestrial → Cave	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.80%
Loam	Environmental → Terrestrial → Soil → Loam	1.80%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.80%
Fossil	Environmental → Terrestrial → Soil → Fossil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.11%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.80%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Soil → Fossil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	51.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Fossill	Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015170	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034665	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1000360172	3300004114	Soil	MKTILSALVALSFVAGVVAPASAAEFSIKTLDQDSRGGHAN*
Ga0062593_1014468301	3300004114	Soil	MKTLVSALVALSFVAGVVAPASAAEPFSVKQLDKDGRGGHQT*
Ga0062593_1016420632	3300004114	Soil	MKTIASALVALSFLAGAVAPAAAYEGSLIQQLDKEGRGGHAT*
Ga0062590_1028642961	3300004157	Soil	MIMKTILSAIVALSFVAGTVAPAAAYESFSIKTLDQDGRGGHVN*
Ga0062592_1000320431	3300004480	Soil	MKTILSALVALSFLAGVVAPASAAEPFSIKQLDAEGRGGHDR*
Ga0062592_1025738821	3300004480	Soil	MTMKTILSAIVALSFVAGTVAPAAAYESFSIKTLDQDGRGGHVN*
Ga0071328_1079254	3300005045	Permafrost	MKTIVSALVALSFVAGVVAPASAAESFSIKQLDKEGRGGHQN*
Ga0071328_1083432	3300005045	Permafrost	MKAIASALLALSFLAGVAAPASADPTTIRQLDKEGRGGHHN*
Ga0071328_1229982	3300005045	Permafrost	MKLIVSALVALSFLAGAVAPVAAYSGSMLEQLDKEGRGGHGQG*
Ga0071328_1327217	3300005045	Permafrost	MKTLVATLVALTFLAGVVGPAIAAEPFSIKTLDQEGRGGHGQG*
Ga0071328_1327218	3300005045	Permafrost	MKTIVSALVALSFLAGVVAPASAESFSIKQLDQDYRGGHGQG*
Ga0071328_1497485	3300005045	Permafrost	MKVIVSALVALSFLTGAIAPAAAYSGSLIERLDKEGRGGHGQG*
Ga0071328_1696611	3300005045	Permafrost	MKTLVATIVALSFLAGVVAPVSAEPFSIKTLDQDQRGGHAG*
Ga0062594_1009829911	3300005093	Soil	MKTILSAIVALSFLAGTVAPAAAYEGFSIKTLDQDGRGGHVN*
Ga0070676_103837881	3300005328	Miscanthus Rhizosphere	MKTILSAIVALSFVAGTVAPAAAYESFSIKTLDQDGRGGHVN*
Ga0070675_1005109774	3300005354	Miscanthus Rhizosphere	MTMKTILSAIVALSFLAGTVAPAAAYEGFSIKTLDQDGRGGHVN*
Ga0070705_1005080474	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKTILSAIVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHVN*
Ga0070663_1005372852	3300005455	Corn Rhizosphere	MTMKTLVSALVALSFVAGVVAPASAAEPFSVKQLDKDGRGGHQT*
Ga0070704_1012498703	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTMKTILSAIVALSFVAGTVAPAAAYESFSIKTLDQDGRGG
Ga0068861_1012828592	3300005719	Switchgrass Rhizosphere	KTILSALVALSFVAGVVAPASAAEFSIKTLDQDSRGGHAN*
Ga0075421_1002566623	3300006845	Populus Rhizosphere	MKTIVSALVALTFLAGAVAPAAAYEGSLIERLDKEGRGGHST*
Ga0075421_1003460154	3300006845	Populus Rhizosphere	MKTILSAIVALSFLAGVVTPASAVESFSIKQLDAEGRGGHDR*
Ga0075421_1005030993	3300006845	Populus Rhizosphere	MKTILSALVALSFIAGAVAPTSAKEVFSIEQLDKEGRGGHQR*
Ga0075421_1005224012	3300006845	Populus Rhizosphere	MKTLVSALVALSFVAGVVAPASAAESFSIKQLDKEGRGGHQN*
Ga0075431_1001019534	3300006847	Populus Rhizosphere	MKTVLSALVALSFLAGVLAPASAAEPFSIKQLDAEGRAGHDR*
Ga0075431_1021734163	3300006847	Populus Rhizosphere	MKTILSALVALSFVAGAVAPAAAYEDFSIKTLDQDRRGGHSY
Ga0079218_133717691	3300007004	Agricultural Soil	MTMKTIVSALVALTFIAGVVGPAIAAEPFTIKQLDQDFRGGHGQS*
Ga0105243_107169404	3300009148	Miscanthus Rhizosphere	RKIMKTIASALVALSFLAGAVAPAAAYEGSLIQQLDKEGRGGHAT*
Ga0105243_111567022	3300009148	Miscanthus Rhizosphere	MTMKTILSAIVALSFVAGTVAPAAAYEGFSIKTLDQDGRGG
Ga0105092_101874592	3300009157	Freshwater Sediment	MKTILSALVALSFVAGAVAPAAAYSGSIIEQLDKEGRGGHNG*
Ga0105092_107054842	3300009157	Freshwater Sediment	MTMKTLVSALLALSFVAGVVAPASAADEPFSIKQLDKEGRGGQANG*
Ga0134125_105329442	3300010371	Terrestrial Soil	MTMKIIASALIALSMLAGAVAPAAAYEGSVIQQLDKEGRGGHAT*
Ga0134122_109435962	3300010400	Terrestrial Soil	GEGPVKSNQNWRSIMKMLVSMLIALSFVAGVVAPAAAYDGSYIEQLDKEGRGGHAT*
Ga0134123_111147921	3300010403	Terrestrial Soil	RRLIMKTILSALVALSFVAGVVAPASAAEFSIKTLDQDSRGGHAN*
Ga0134123_120871891	3300010403	Terrestrial Soil	MTMKTILSAIVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHAN*
Ga0157294_101231821	3300012892	Soil	MTMKTILSAIVALSFLAGTVAPAAAYEGFSIKTLDQDGRGGHAN*
Ga0157308_102733871	3300012910	Soil	MTMKTILSAIVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHVN*
Ga0157380_105654511	3300014326	Switchgrass Rhizosphere	MTMKTILSAIVALSFLAGTVAPAAAYEGFSIKTLDQDGRGGH
Ga0120098_10697311	3300015170	Fossill	MIMKTLVSALVALSFVAGVVAPASAAESFSIKQLDKEGRGGHQT*
Ga0173480_108821881	3300015200	Soil	MKTILSALVALSFLAGVVAPASAAEPFSIKQLDAEGR
Ga0173480_109290032	3300015200	Soil	MKTIASALVALSFLAGAVAPAAAYEGSLIQQLDKEGRGGH
Ga0184609_105497051	3300018076	Groundwater Sediment	MKTLVATLVALTFLAGVVGPAIAAEPFSIKTLDQDNRGGHGQG
Ga0190265_101795342	3300018422	Soil	MKTLVATFVALTFLAGVVGPAIAAEPFSIKTLDQEGRGGHNGG
Ga0190265_101958192	3300018422	Soil	MKTIVSALVALTFIAGVVGPAIAAEPFTIKQLDQDFRGGHGES
Ga0190265_103106161	3300018422	Soil	MKTILSAIVALSFVAGAVAPASAYSGSLIERLDQDRRGGHGNG
Ga0190265_106190282	3300018422	Soil	MTMKTLVSALVALSFLAGVVAPASAAEPFSIKQLDKESRGGFGNG
Ga0190265_109122172	3300018422	Soil	LETIMKAIASALLALSFLAGVAAPVSADTRSIKQLDSEGRGGHHK
Ga0190265_111180162	3300018422	Soil	MKTLVSALLALSFVAGVVAPASAADEPFSIKQLDKEGRGGQANG
Ga0190265_112742941	3300018422	Soil	MKTLVATLVALTFLAGVVGPAIAAEPFSIKTLDQEGRGGHVQG
Ga0190265_114427792	3300018422	Soil	MKVIVSALVALSFLTGAIAPAAAYSGSLIEQLDKEGRGGHGQA
Ga0190265_119179271	3300018422	Soil	MKTLVATLVALTFLAGVVGPAIAAEPFSIKTLDQEGRGGHG
Ga0190265_119241492	3300018422	Soil	MKTILSALVALSFVAGAVAPAAAYSGSLIERLDKEGRGGHGQG
Ga0190265_121610821	3300018422	Soil	NKQTFRRSIMKTILSALVALSFVAGAVAPAAAYSGSLIERLDKEGRGGQGQG
Ga0190265_125907071	3300018422	Soil	RRATMKAIVSALVALSFLTGAVAPAAAYSGSLIEQLDKEGRGGHGQG
Ga0190265_130470161	3300018422	Soil	MKTIVSALVALSFLAGAVARASAESFSIKQLDQDYRGGHGQG
Ga0190272_100185122	3300018429	Soil	MKTLVSALVALSFVAGVVAPASAAESFSIKQLDKEGRGGHQN
Ga0190272_100193334	3300018429	Soil	MKTMLSALVALSFLAGAVAPAAAYEGSLIEQLDKEGRGGHAT
Ga0190272_100928113	3300018429	Soil	MKTIVSALVALTFIAGVVGPAIAAEPFSIKQLDQDYRGGHGQG
Ga0190272_101512264	3300018429	Soil	MKTFVSALIALSFLAGVVSPASAESFSIKQLDQDFRGGHGQG
Ga0190272_102345381	3300018429	Soil	MKTIVSALVALSFLAGAVAPAAAYEGSTIEQLDKEGRGGHAT
Ga0190272_102607701	3300018429	Soil	MKTILSAIVALSFVAGAVAPASAYSGSLIERLDKEGRGGFGNG
Ga0190272_102734101	3300018429	Soil	MKLIVSALVALSFLAGAIAPAAAYSGSMIERLDQEGRGGHGQG
Ga0190272_104155912	3300018429	Soil	MKTILSALVALSFVAGVVAPASAAEFSIKTLDQDSRGGHAN
Ga0190272_104637292	3300018429	Soil	MKTILSALVALSFVAGAVAPAAAYSGSLIEQLDKEGRGGQGGAG
Ga0190272_104716082	3300018429	Soil	MKTIVSALVALTFIAGVVGPAIAAEPFTIKQLDQDFRGGHGQS
Ga0190272_107951581	3300018429	Soil	MGRLSMKTILAALVALSFVAGVVTPASAEPFSIQTLDAEGRGGHNT
Ga0190272_107951582	3300018429	Soil	MKLIVSALVALSFLAGAVAPAAAYSGSLLEQLDKEARGGHGGG
Ga0190272_109868282	3300018429	Soil	MNKILAAFVSLSFLVGAIASATAAEPFSIKQLDSEGRGGHPT
Ga0190272_112036991	3300018429	Soil	MKTLVATLVALTFLAGVVGPAIAAEPFSIKTLDQEGRGGHGQG
Ga0190272_112399141	3300018429	Soil	MKAIASALLALSFLAGVAAPASADPTTIRQLDKEGRGGHHN
Ga0190272_113451682	3300018429	Soil	MKTIVSALVALSFLAGVVAPASAAEPFSIKQLDQDFRGGHGQG
Ga0190272_114048651	3300018429	Soil	MKTLVATLIALSFVTGAVAPAAAYSGSLIERLDKEGRGGHGQG
Ga0190272_114287302	3300018429	Soil	MKTLVATIVALSFLAGVVAPVSAEPFSIKTLDQDQRGGHAG
Ga0190272_116382581	3300018429	Soil	MKVIVPALVALTFIAEIFGPAIAAEPFSIKTLDQDGR
Ga0190272_117202452	3300018429	Soil	MKTIISALVALSFVAGAVAPAAAAPYTGSLIEQLDQDHRGGFAG
Ga0190272_117920431	3300018429	Soil	MKTIVSALVALSFLAGAVAPAAAADENFSIEQLDKEGRGGHAT
Ga0190272_117952381	3300018429	Soil	MKTILSALVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHAN
Ga0190272_118307331	3300018429	Soil	TIFSAIIALSFVAGTVAPAAAYEGFSIKTLDQDSRGGHSN
Ga0190272_118929091	3300018429	Soil	MKTIVSALVALSFLAGVVAPAAAAPYSGSLIEQLDKEGRGGFNG
Ga0190272_122381271	3300018429	Soil	MKLIVSALVALSFLAGAVAPVAAYSGSMLEQLDKEGRGGQGGAG
Ga0190272_133488652	3300018429	Soil	TLVATFVALTFIAGIVGPAIAAEPFSIKTLDQEGRGGHGQG
Ga0190275_116971501	3300018432	Soil	MKTIVSALVALSFLAGAVAPAAAYEGSVIEQLDKEGRGGHAT
Ga0190275_122005522	3300018432	Soil	MKTFVSALVALTFIAGVVGPVIAAEPFSIKQLDQDQRGGHGNG
Ga0190268_101255811	3300018466	Soil	MKTILSAIVALSFVAGAVAPAAAYQGLTIKQLDQDRRGGHGQG
Ga0190268_101255812	3300018466	Soil	MKLIVSALVALSFLTGAVAPAAAYSGSMLEQLDKEGRGGHGQA
Ga0190268_101255813	3300018466	Soil	MKIIVSALVALSFLTGAIAPAAAYSGSLLEQLDKEGRGGHGQG
Ga0190270_104949252	3300018469	Soil	MKILVSALVALSFVAGVVAPASAAEPFSIKQLDKEGRGGHQT
Ga0190270_104995021	3300018469	Soil	MNTILSAIVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHVN
Ga0190270_127699431	3300018469	Soil	MKIILSTLVALSFLAGVVAPASAAEPFSIKQLDAEGRGGHDR
Ga0190274_100455623	3300018476	Soil	MKTLVSALVALSFVAGVVAPASAAEPFSVKQLDKDGRGGHQT
Ga0190274_101178292	3300018476	Soil	MKTIASALVALSFLAGAVAPAAAYEGSLIQQLDKEGRGGHAT
Ga0173481_104383411	3300019356	Soil	MKTILSAIVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHVN
Ga0173481_104811681	3300019356	Soil	MKTILSAIVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHAN
Ga0187894_101420892	3300019360	Microbial Mat On Rocks	MTMKTILSALVALSFLAGAVAPAAAYEGSLIERLDKEGRGGHAT
Ga0187894_102216102	3300019360	Microbial Mat On Rocks	MKTILSALVALSFVAGAVAPAAAYHGSAIEQLDKQGRGGHAT
Ga0190264_100546452	3300019377	Soil	MKTLVSALVALSFLAGVVAPASAAEPFSIKQLDKESRGGFGNG
Ga0190264_105045882	3300019377	Soil	MKTTILSAFLALSFLAGAVAPAAADWYAGSPVQQLEQDGRFGNNN
Ga0222623_101979072	3300022694	Groundwater Sediment	MKTILSALVALSFVAGVVTPASAEPFSIQTLDAEGRGGHNT
Ga0222623_101979073	3300022694	Groundwater Sediment	MKLIVSALVALSFLAGAVAPAAAYSGSLLEQLDKEGRGGHGQG
Ga0247789_10863612	3300023266	Soil	MKTIVSALVALSFLAGVVTPASAAEPFSIKQLDAEGRGGHDR
Ga0207682_106377361	3300025893	Miscanthus Rhizosphere	KTILSALVALSFVAGVVAPASAAEFSIKTLDQDSRGGHAN
Ga0207645_101624831	3300025907	Miscanthus Rhizosphere	MKTILSAIVALSFLAGTVAPAAAYEGFSIKTLDQDGRGGHVN
Ga0207681_117183981	3300025923	Switchgrass Rhizosphere	MTMKTLVSALVALSFVAGVVAPASAAEPFSVKQLDKDGRGGHQT
Ga0207669_115847291	3300025937	Miscanthus Rhizosphere	MKTILSAIVALSFVAGTVAPAAAYESFSIKTLDQDGRGGHVN
Ga0207689_107690802	3300025942	Miscanthus Rhizosphere	ALVALSFVAGTVAPAAAYEGFSIKTLDQDGRGGHAN
Ga0207675_1013688342	3300026118	Switchgrass Rhizosphere	LRRLIMKTILSALVALSFVAGVVAPASAAEFSIKTLDQDSRGGHAN
Ga0209382_101139882	3300027909	Populus Rhizosphere	MKTIVSALVALTFLAGAVAPAAAYEGSLIERLDKEGRGGHST
Ga0209382_101387754	3300027909	Populus Rhizosphere	MKTVLSALVALSFLAGVLAPASAAEPFSIKQLDAEGRAGHDR
Ga0209382_103149022	3300027909	Populus Rhizosphere	MKTILSALVALSFIAGAVAPTSAKEVFSIEQLDKEGRGGHQR
Ga0247830_113862592	3300033551	Soil	MKTILSALVALSFLADVVAPASAAEPFSIKQLDAEGRGGHDR
Ga0314787_044070_2_109	3300034665	Soil	MTMKTILSAIVALSFVAGTVAPAAAYESFSIKTLDQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085301

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences