Basic Information | |
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Family ID | F085283 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 50 residues |
Representative Sequence | DMRLGRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.90 % |
% of genes near scaffold ends (potentially truncated) | 99.10 % |
% of genes from short scaffolds (< 2000 bps) | 92.79 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (99.099 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (12.613 % of family members) |
Environment Ontology (ENVO) | Unclassified (45.946 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (64.865 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 71.74% β-sheet: 0.00% Coil/Unstructured: 28.26% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Sediment Natural And Restored Wetlands Soil Groundwater Sediment Soil Terrestrial Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Natural And Restored Wetlands Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Endosphere Switchgrass Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Activated Sludge |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI24033J26618_10754482 | 3300002155 | Corn, Switchgrass And Miscanthus Rhizosphere | DMRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
JGI24742J22300_101245642 | 3300002244 | Corn, Switchgrass And Miscanthus Rhizosphere | GALRLDDMRLGRAGGRRTARLGXALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0055455_100258913 | 3300003990 | Natural And Restored Wetlands | IPVAVALGALAIWLGRTALRHDDARLGRAGGRRTARLGRALGVLGIALAATALVALCVYGLLTYLGER* |
Ga0070658_108122001 | 3300005327 | Corn Rhizosphere | GRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0070676_101237491 | 3300005328 | Miscanthus Rhizosphere | ARGALRLDDMRLGRAGGRRTARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0070676_109388581 | 3300005328 | Miscanthus Rhizosphere | VGIALGILAVWLAREALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR* |
Ga0070683_1002738921 | 3300005329 | Corn Rhizosphere | LGRGALRHDDVRLGRAGGRGSARVGRALGVLGIALAATCAVALAVYGILTYLGER* |
Ga0066388_1038298802 | 3300005332 | Tropical Forest Soil | RAGGRRVAQFGRALGVLGIALAATGLVAVAVYGLLTYLGER* |
Ga0068869_1011278492 | 3300005334 | Miscanthus Rhizosphere | ARGALRHDDVRLGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0070666_109920242 | 3300005335 | Switchgrass Rhizosphere | DIRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0070660_1004665681 | 3300005339 | Corn Rhizosphere | RLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0070660_1006657612 | 3300005339 | Corn Rhizosphere | RLGRAGGRRLARLGRALGVLGISLATTCAVALAVYGILTYLGER* |
Ga0070691_104118572 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | EALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR* |
Ga0070668_1005864502 | 3300005347 | Switchgrass Rhizosphere | DARLGRAGGRGAARLGQALAVLGIALAATALVALAVYGLLTYLGER* |
Ga0070669_1011976092 | 3300005353 | Switchgrass Rhizosphere | LRHDDVRLGRAGGRGSARVGRALGVLGIALAATCAVALAVYGILTYLGER* |
Ga0070675_1005841063 | 3300005354 | Miscanthus Rhizosphere | LGRAGGRRLARLGHGLGVLGISLAATCAVALAVYGILTYLGER* |
Ga0070675_1009320551 | 3300005354 | Miscanthus Rhizosphere | GGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0070663_1006086371 | 3300005455 | Corn Rhizosphere | RAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR* |
Ga0068867_1000610301 | 3300005459 | Miscanthus Rhizosphere | LDDMRLGRAGGRRTARLGQALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0068867_1021741351 | 3300005459 | Miscanthus Rhizosphere | GLARSALHLDDMRLGRVGGRRLARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0070679_1001770521 | 3300005530 | Corn Rhizosphere | RAGGRRTARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0070684_1002890841 | 3300005535 | Corn Rhizosphere | VAIGLGRGALRHDDVRLGRAGGRGSARVGRALGVLGIALAATCAVALAVYGILTYLGER* |
Ga0070696_1012633891 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | REALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR* |
Ga0070664_1007081011 | 3300005564 | Corn Rhizosphere | IGLARGALRLDDMRLGRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0068857_1002579181 | 3300005577 | Corn Rhizosphere | RLGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0068859_1002939823 | 3300005617 | Switchgrass Rhizosphere | IRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0068851_100878773 | 3300005834 | Corn Rhizosphere | ALRLDDMRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0068863_1025974331 | 3300005841 | Switchgrass Rhizosphere | GRRLARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0068858_1016256261 | 3300005842 | Switchgrass Rhizosphere | AALRHDDARLGRAGGRGAARLGRALAVLGIALAATALVAIAVYGLLTYLGER* |
Ga0068860_1001227224 | 3300005843 | Switchgrass Rhizosphere | RRLARLGRALGVIGISLAATCAVALAVYGILTYLGER* |
Ga0075368_101292731 | 3300006042 | Populus Endosphere | GRGAARLGRALGVLGVALAATALVALAVYGLLTYLGER* |
Ga0075433_102526083 | 3300006852 | Populus Rhizosphere | GLGRGALRHDDVRLGRAGGRGSARVGRALGVLGIALAATCAVALAVYGILTYLGER* |
Ga0075433_117028792 | 3300006852 | Populus Rhizosphere | GLARGALRLDDIRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0075425_1016055511 | 3300006854 | Populus Rhizosphere | RGALRLDDMRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0075424_1006511503 | 3300006904 | Populus Rhizosphere | RTARLGRAFGVLGISLAATCAVALAVYGILTYLGER* |
Ga0075419_112978921 | 3300006969 | Populus Rhizosphere | TVGRALAVLGISLAATGLVALAVYGLLTYLGERT* |
Ga0105240_120742712 | 3300009093 | Corn Rhizosphere | GRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0111539_107168463 | 3300009094 | Populus Rhizosphere | LARGALRHDDVRLGRAGGRGLAKAGRALAVLGISLAATGLVALTVYGLLTYLGERT* |
Ga0075423_117615282 | 3300009162 | Populus Rhizosphere | TARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0105237_110144021 | 3300009545 | Corn Rhizosphere | VAVALGILSIWLARGALRHDDVRLGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0131092_111705562 | 3300009870 | Activated Sludge | LRLDDMRLGRAGGRRRARVGRALGVIGISLAATCAVALAVYGILTYLGER* |
Ga0126377_135751821 | 3300010362 | Tropical Forest Soil | VGILLGALAIVLARRALRHDDMRLGRAGGRGASRVGWSLGVLGIALSATCLVALGVYGLLTYLGER* |
Ga0105239_105086111 | 3300010375 | Corn Rhizosphere | GRGAARLGRALGVLGIALAATGLVAVAVYGLLTYLGDR* |
Ga0134126_117955831 | 3300010396 | Terrestrial Soil | RGALRHDDVRLGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0137424_10581331 | 3300011412 | Soil | DDVRLGRAGGRGAARLGRALAVLGLALASTCLVALGVYGLLTYLGERG* |
Ga0157303_100255891 | 3300012896 | Soil | LRLDDMRLGRAGGRRTARLGQALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0157285_100764782 | 3300012897 | Soil | LGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0157308_100114731 | 3300012910 | Soil | DMRLGRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0157306_102419071 | 3300012912 | Soil | IGLARGALRLDDMRLGRAGGRRAARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0164241_104369362 | 3300012943 | Soil | RHDDVRMGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0164300_104692392 | 3300012951 | Soil | ARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0164300_111708461 | 3300012951 | Soil | RLDDMRLGRAGGRRLARFGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0164303_105000872 | 3300012957 | Soil | ARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0164299_100668383 | 3300012958 | Soil | SIWLARGALRHDDVRLGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER* |
Ga0164302_103149293 | 3300012961 | Soil | ARSALRLDDMRLGRAGGRRLARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0164307_106127032 | 3300012987 | Soil | RRTARLGQALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0164305_122324231 | 3300012989 | Soil | AFAIGLARGALRLDDMRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0157371_104573311 | 3300013102 | Corn Rhizosphere | LDDMRLGRAGGRRTARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0075345_11931522 | 3300014312 | Natural And Restored Wetlands | GAALAWGLGVAGIALAASATVALAVYGVLTYLGERGT* |
Ga0163163_111723121 | 3300014325 | Switchgrass Rhizosphere | RTARLGRALGVLGISLAATCAVALAVYGILTYLGER* |
Ga0157377_116782561 | 3300014745 | Miscanthus Rhizosphere | GAVAIGLARGALRLDDMRLGRAGGRRTARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0157376_110243521 | 3300014969 | Miscanthus Rhizosphere | LAIWLARGALRHDDARLGRAGGRGAARLGRAFGVLGIALASTGLVAVGVYGLLTYLGDR* |
Ga0132256_1010106861 | 3300015372 | Arabidopsis Rhizosphere | AARLGRALGVLGIALAATALVALAVYGLLTYLGER* |
Ga0132257_1000326358 | 3300015373 | Arabidopsis Rhizosphere | RLDDMRLGRAGGRRTARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0132255_1009809843 | 3300015374 | Arabidopsis Rhizosphere | ARLGQALAVLGIALAATALVALAVYGLLTYLGER* |
Ga0132255_1013259211 | 3300015374 | Arabidopsis Rhizosphere | LARGALRLDDIRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER* |
Ga0184609_105687753 | 3300018076 | Groundwater Sediment | DDLRLGRAGGRDAARVARALGVLGIALAATGVVALAVYELLTYLGER |
Ga0190270_107722801 | 3300018469 | Soil | MRHDDVRLGRAGGRGAARLGRALAVLGLALASTCLVALGVYGLLTYLGERG |
Ga0206354_117064562 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | WLARGALRHDDVRLGRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER |
Ga0247753_10210832 | 3300022892 | Soil | GLGRGALRHDDVRLGRAGGRGSARVGRALGVLGIALAATCAVALAVYGILTYLGER |
Ga0247795_10616422 | 3300022899 | Soil | RRTARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0247790_100580512 | 3300022915 | Soil | RAGGRRTARLGQALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207645_107883182 | 3300025907 | Miscanthus Rhizosphere | VGIALGILAVWLAREALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR |
Ga0207643_103193442 | 3300025908 | Miscanthus Rhizosphere | RLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0207705_106718951 | 3300025909 | Corn Rhizosphere | RLGRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207695_114973782 | 3300025913 | Corn Rhizosphere | GRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207662_103154591 | 3300025918 | Switchgrass Rhizosphere | GALAIGIARGALRLNDMRLGRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGE |
Ga0207690_106215911 | 3300025932 | Corn Rhizosphere | GGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207686_110363261 | 3300025934 | Miscanthus Rhizosphere | GGRRLARVGRALGVIGISLAATCAVALAVYGILTYLGER |
Ga0207669_106245511 | 3300025937 | Miscanthus Rhizosphere | GLARGALRLDDIRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0207704_117321471 | 3300025938 | Miscanthus Rhizosphere | PLGVVLGVVALRLAQGAIRHDELRLGRAGGRGAARVGRALGVLGLALASTCLVALGVYGLLTYLGERS |
Ga0207661_106725162 | 3300025944 | Corn Rhizosphere | RHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR |
Ga0207667_102260333 | 3300025949 | Corn Rhizosphere | TARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207667_117437751 | 3300025949 | Corn Rhizosphere | IRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0207658_117970301 | 3300025986 | Switchgrass Rhizosphere | LDDMRLGRAGGRRLARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207639_100274436 | 3300026041 | Corn Rhizosphere | ALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR |
Ga0207639_104849931 | 3300026041 | Corn Rhizosphere | LRLDDMRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0207708_114139422 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | SARVGRALGVLGIALAATCAVALAVYGILTYLGER |
Ga0207648_101246821 | 3300026089 | Miscanthus Rhizosphere | IARGALRLDDMRLGRAGGRRTARLGQALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207648_101300511 | 3300026089 | Miscanthus Rhizosphere | GGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0207648_116553662 | 3300026089 | Miscanthus Rhizosphere | GLARSALHLDDMRLGRVGGRRLARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0207676_108201251 | 3300026095 | Switchgrass Rhizosphere | RLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0209966_10655771 | 3300027695 | Arabidopsis Thaliana Rhizosphere | RLDEVRLGRAGGRRTARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0268266_113068001 | 3300028379 | Switchgrass Rhizosphere | GRAGGRRTARVGWALGVFAIALASTCLVALAVYGLLTYLGER |
Ga0268264_101069971 | 3300028381 | Switchgrass Rhizosphere | RRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0247828_101746761 | 3300028587 | Soil | VGILAVWLAREALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR |
Ga0247818_108383422 | 3300028589 | Soil | VGIVLGIVALRLAQGALRHDDVRLGRAGGRRAARLGRALGVLGLALASTCLVALGVYELLTYLGERS |
Ga0247818_111575201 | 3300028589 | Soil | LRLERAGGRGAARVGRALGVLGIALGATALVSVSVYGFLTYLGER |
Ga0247820_103125603 | 3300028597 | Soil | ALGILAVWLAREALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR |
Ga0247824_102330601 | 3300028809 | Soil | MRLGRAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0247826_104533952 | 3300030336 | Soil | VLLGALAIGLARSALRHDDLRLERAGGRGAARVGRALGVLGIALGATALVSVSVYGFLTYLGER |
Ga0307497_107083422 | 3300031226 | Soil | DMRLGRAGGRRSARLGRALGVLGISLAATCAVALAVYGILTYLGER |
Ga0310887_108484221 | 3300031547 | Soil | VRLGRAGGRRAARLGRALGVLGLALASTCLVALGVYELLTYLGERS |
Ga0310886_101863543 | 3300031562 | Soil | IPVGIALGILAVWLAREALRHDDARLGRAGGRGAARLGRALGVLGIALAATGLVAVGVYGLLTYLGDR |
Ga0310891_103596392 | 3300031913 | Soil | ARGAFAIGLARGALRLDDLRLGGAGGRRLARLGRALGVLGISLGATCAVALAVYGILTYLGER |
Ga0310884_107014891 | 3300031944 | Soil | LHAGVAIPVAVVLGFIALRLARGALRHDDVRLGRAGGRGLATVGRALAVLGISLAATGLVALTVYGLLTYLGERT |
Ga0310899_106986802 | 3300032017 | Soil | FIALRLARGALRHDDVRLGRAGGRGLATVGRALAVLGISLAATGLVALTVYGLLTYLGER |
Ga0315275_105859741 | 3300032401 | Sediment | DSVTLGRAGGRRTARAGWVLGVLGLCLASSALVAIAVYGVLTYVGSQD |
Ga0247830_101988963 | 3300033551 | Soil | EGGAIWLARAALRHDDARLGRAGGRGAARLGRALGVLGIALAATALVALAVYGLLTYLGE |
Ga0247830_103646721 | 3300033551 | Soil | LAIGLARSALRHDDLRLERAGGRGAARVGRALGVLGIALGATALVSVSVYGFLTYLGER |
Ga0247830_112449552 | 3300033551 | Soil | GFAIPVAVVLGFVALRLARGALRHDDVRLGRAGGRGLATVGRALAVLGISLAATGLVALVVYGLLTYLGERT |
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