Metagenome / Metatranscriptome Family F085241

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085241
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	63 residues
Representative Sequence	MYEYRYQVTKNGQRVGSLEAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Number of Associated Samples	81
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	53.15 %
% of genes near scaffold ends (potentially truncated)	31.53 %
% of genes from short scaffolds (< 2000 bps)	84.68 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.198 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (23.423 % of family members)
Environment Ontology (ENVO)	Unclassified (27.928 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.649 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.22% β-sheet: 30.00% Coil/Unstructured: 57.78%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.371.1.1: YehR-like	d2joea1	2joe	0.60865
b.1.8.0: automated matches	d1xtma_	1xtm	0.60438
b.1.8.1: Cu,Zn superoxide dismutase-like	d2aqma_	2aqm	0.60387
b.61.2.1: Metalloprotease inhibitor	d1jiwi_	1jiw	0.60094
f.4.1.1: Outer membrane protein	d1qjpa_	1qjp	0.59111

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01557	FAA_hydrolase	28.83
PF00368	HMG-CoA_red	18.92
PF00106	adh_short	6.31
PF00781	DAGK_cat	4.50
PF00378	ECH_1	4.50
PF12697	Abhydrolase_6	1.80
PF09594	GT87	0.90
PF14246	TetR_C_7	0.90
PF04234	CopC	0.90
PF08386	Abhydrolase_4	0.90
PF12680	SnoaL_2	0.90
PF01323	DSBA	0.90
PF02515	CoA_transf_3	0.90
PF00528	BPD_transp_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1257	Hydroxymethylglutaryl-CoA reductase	Lipid transport and metabolism [I]	18.92
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	9.01
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.90
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.20 %
Unclassified	root	N/A	1.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.20 %
Unclassified	root	N/A	1.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.20 %
Unclassified	root	N/A	1.80 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.50 %
Unclassified	root	N/A	1.80 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	41.44 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.80 %
Unclassified	root	N/A	1.80 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	41.44 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	1.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
Unclassified	root	N/A	1.80 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.90 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	41.44 %
Egicoccales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales	1.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
Unclassified	root	N/A	1.80 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	41.44 %
Egicoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae	1.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
Unclassified	root	N/A	1.80 %
Eubacteriales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis	0.90 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	41.44 %
Egicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae → Egicoccus	1.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
Unclassified	root	N/A	1.80 %
Clostridiales Family XVII. Incertae Sedis	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis	0.90 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	41.44 %
Egicoccus halophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae → Egicoccus → Egicoccus halophilus	1.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
Unclassified	root	N/A	1.80 %
Clostridiales Family XVII. Incertae Sedis	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005174\|Ga0066680_10142945	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300005175\|Ga0066673_10448915	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005176\|Ga0066679_10914823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	551	Open in IMG/M
3300005178\|Ga0066688_10119236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1630	Open in IMG/M
3300005178\|Ga0066688_10704646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	641	Open in IMG/M
3300005179\|Ga0066684_10848913	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005329\|Ga0070683_100381966	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300005435\|Ga0070714_100484306	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300005435\|Ga0070714_101591263	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005436\|Ga0070713_101811740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	592	Open in IMG/M
3300005445\|Ga0070708_100241561	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300005467\|Ga0070706_100051472	All Organisms → cellular organisms → Bacteria	3801	Open in IMG/M
3300005467\|Ga0070706_100346968	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300005471\|Ga0070698_100153984	All Organisms → cellular organisms → Bacteria	2245	Open in IMG/M
3300005530\|Ga0070679_101295353	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300005536\|Ga0070697_100153121	All Organisms → cellular organisms → Bacteria	1944	Open in IMG/M
3300005537\|Ga0070730_10006999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	9581	Open in IMG/M
3300005537\|Ga0070730_10162910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1506	Open in IMG/M
3300005537\|Ga0070730_10197840	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300005537\|Ga0070730_10216423	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300005542\|Ga0070732_10133304	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300005552\|Ga0066701_10074291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1934	Open in IMG/M
3300005559\|Ga0066700_10082600	All Organisms → cellular organisms → Bacteria	2066	Open in IMG/M
3300005559\|Ga0066700_10082641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2065	Open in IMG/M
3300005560\|Ga0066670_10021058	All Organisms → cellular organisms → Bacteria	3032	Open in IMG/M
3300005564\|Ga0070664_101184846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	720	Open in IMG/M
3300005569\|Ga0066705_10435625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	821	Open in IMG/M
3300005575\|Ga0066702_10096962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1677	Open in IMG/M
3300005575\|Ga0066702_10251349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1078	Open in IMG/M
3300005578\|Ga0068854_100096665	Not Available	2207	Open in IMG/M
3300005764\|Ga0066903_100857830	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300005764\|Ga0066903_102850510	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300005764\|Ga0066903_103380983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae → Egicoccus → Egicoccus halophilus	861	Open in IMG/M
3300006914\|Ga0075436_101169316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	580	Open in IMG/M
3300009012\|Ga0066710_102799385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	690	Open in IMG/M
3300009012\|Ga0066710_103871813	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300009088\|Ga0099830_10884964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	738	Open in IMG/M
3300009089\|Ga0099828_10069802	All Organisms → cellular organisms → Bacteria	2971	Open in IMG/M
3300009090\|Ga0099827_10183418	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300009090\|Ga0099827_10496708	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300009137\|Ga0066709_102451109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	706	Open in IMG/M
3300010359\|Ga0126376_12277784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	587	Open in IMG/M
3300011269\|Ga0137392_10298096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1332	Open in IMG/M
3300011270\|Ga0137391_10848299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	750	Open in IMG/M
3300011270\|Ga0137391_10913579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	718	Open in IMG/M
3300011271\|Ga0137393_10179899	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300012096\|Ga0137389_10683951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	881	Open in IMG/M
3300012189\|Ga0137388_11974498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	512	Open in IMG/M
3300012203\|Ga0137399_10923541	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012205\|Ga0137362_10952578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	732	Open in IMG/M
3300012207\|Ga0137381_11096949	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300012209\|Ga0137379_10460598	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300012209\|Ga0137379_10922996	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300012209\|Ga0137379_11070868	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300012210\|Ga0137378_10108565	All Organisms → cellular organisms → Bacteria	2554	Open in IMG/M
3300012211\|Ga0137377_11151760	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300012212\|Ga0150985_101460086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1931	Open in IMG/M
3300012212\|Ga0150985_102103470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1226	Open in IMG/M
3300012212\|Ga0150985_109809501	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300012356\|Ga0137371_10210731	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300012357\|Ga0137384_10334109	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300012363\|Ga0137390_11427829	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012469\|Ga0150984_103715744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1924	Open in IMG/M
3300012469\|Ga0150984_104100439	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300012685\|Ga0137397_10673331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	769	Open in IMG/M
3300012927\|Ga0137416_12097782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	519	Open in IMG/M
3300012971\|Ga0126369_12849804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	566	Open in IMG/M
3300013763\|Ga0120179_1075035	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300013764\|Ga0120111_1005423	All Organisms → cellular organisms → Bacteria	4378	Open in IMG/M
3300013764\|Ga0120111_1115042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	628	Open in IMG/M
3300014052\|Ga0120109_1068507	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300014058\|Ga0120149_1080635	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300015356\|Ga0134073_10047337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1142	Open in IMG/M
3300015356\|Ga0134073_10250973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	611	Open in IMG/M
3300017792\|Ga0163161_11307811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	630	Open in IMG/M
3300018433\|Ga0066667_12290303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	505	Open in IMG/M
3300018468\|Ga0066662_10104101	All Organisms → cellular organisms → Bacteria	2020	Open in IMG/M
3300018468\|Ga0066662_10492744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1113	Open in IMG/M
3300021362\|Ga0213882_10032705	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300021362\|Ga0213882_10137674	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300021362\|Ga0213882_10213086	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300021377\|Ga0213874_10190266	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300021377\|Ga0213874_10218784	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300021377\|Ga0213874_10404104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	532	Open in IMG/M
3300021384\|Ga0213876_10007248	All Organisms → cellular organisms → Bacteria	6045	Open in IMG/M
3300021384\|Ga0213876_10158108	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300021861\|Ga0213853_10359613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis	7297	Open in IMG/M
3300022467\|Ga0224712_10416249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	642	Open in IMG/M
3300024330\|Ga0137417_1384219	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300025910\|Ga0207684_10275739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1451	Open in IMG/M
3300025910\|Ga0207684_10933405	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300025915\|Ga0207693_10886498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	685	Open in IMG/M
3300025916\|Ga0207663_10522218	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300025922\|Ga0207646_10600838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	988	Open in IMG/M
3300025922\|Ga0207646_11235454	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300025929\|Ga0207664_10207478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1694	Open in IMG/M
3300025981\|Ga0207640_10102216	Not Available	2013	Open in IMG/M
3300026309\|Ga0209055_1068959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1480	Open in IMG/M
3300026319\|Ga0209647_1100523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1380	Open in IMG/M
3300026332\|Ga0209803_1077738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1395	Open in IMG/M
3300026532\|Ga0209160_1055506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2253	Open in IMG/M
3300027842\|Ga0209580_10048683	All Organisms → cellular organisms → Bacteria	1971	Open in IMG/M
3300027857\|Ga0209166_10021341	All Organisms → cellular organisms → Bacteria	4038	Open in IMG/M
3300027857\|Ga0209166_10381212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	734	Open in IMG/M
3300027857\|Ga0209166_10397589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egicoccales → Egicoccaceae → Egicoccus → Egicoccus halophilus	716	Open in IMG/M
3300027875\|Ga0209283_10663061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	655	Open in IMG/M
3300027882\|Ga0209590_10693314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	652	Open in IMG/M
3300031912\|Ga0306921_12761382	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300032180\|Ga0307471_103105957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	589	Open in IMG/M
3300034268\|Ga0372943_1130179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300034384\|Ga0372946_0495827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	593	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.49%
Host-Associated	Host-Associated	13.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.59%
Plants	Host-Associated → Plants	13.51%
Aquatic	Environmental → Aquatic	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.41%
Roots	Host-Associated → Plants → Roots	4.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.60%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	2.70%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.96%
Loam	Environmental → Terrestrial → Soil → Loam	18.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	4.50%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.32%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.50%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.70%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	8.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.50%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	4.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.70%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	2.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.80%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066680_101429453	3300005174	Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWTIYHPEFVDPGEPRTIERLDEALYAAGFEIMPD
Ga0066673_104489152	3300005175	Soil	MTLEYRYQITKDGVRVGSVEAEYHGRAVWQIQHPDFIDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0066679_109148231	3300005176	Soil	MYEYRYQVTKDGLRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPED*
Ga0066688_101192362	3300005178	Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWTIDHPEFVDPGEPRTIERLDEALYAAGFEIMPDDSEA*
Ga0066688_107046461	3300005178	Soil	MHNMYEYRYQVTKNGLRVGSLEAEYHGRATWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0066684_108489131	3300005179	Soil	MALEYRYQVTKDGVRVGSVEAEYHGRAVWQIQHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070683_1003819662	3300005329	Corn Rhizosphere	MSFDYHYQVTKDGVRVGSVMAEYHGRAEWSIDHPDFVDPGEPRTIERLDQALYAAGFEIMPDD*
Ga0070714_1004843062	3300005435	Agricultural Soil	MTFEYRYQVLKNGVRVGSVAAEWHGRAEWSIDHPDFRDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070714_1015912632	3300005435	Agricultural Soil	MTFDYHYQVTKNGERVGTIDAEYHGRAVWQIEHPDFVDPGEPRTIERLDGALYAAGFEVMPDD*
Ga0070713_1018117401	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MALEYRYQVTKDGVRVGFVEAEYHGRAVWQIQHPEFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070708_1002415612	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGQRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070706_1000514722	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGLRVGSLEAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070706_1003469683	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGQRVGSLEAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070698_1001539844	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGQRVGSLEAEYHGRATWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070679_1012953532	3300005530	Corn Rhizosphere	MSFDYHYQVTKDGVRVGSVMAEYHGRAEWSIDHPDFVDPGEPRTIERLDQALYAAGFE
Ga0070697_1001531212	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGQRVGSLESEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0070730_1000699912	3300005537	Surface Soil	MHYSYRYQVTKDGQRVGTVEAEYHGRAAWTIDHPDFVDPGEPRTIERLDDALYAAGFEIMPDD*
Ga0070730_101629103	3300005537	Surface Soil	LYEYRYQVTKDGQRVGSLEAEYHGRAIWAIDHPDFVDPGEPRTIERLDKALYAAGFEIMPDD*
Ga0070730_101978403	3300005537	Surface Soil	MSFDYRYQVTKNGLRVGTIEAEYHGRAVWQIEHPDFVDPGEPRTIERLDAVLYAAGFEVMPDD*
Ga0070730_102164231	3300005537	Surface Soil	MSEATARSYCYQITKNGQKVGSVQAEYHGRAAWTIDHPDFTDPGEPRTIERLDEALYAAGFEIMPD
Ga0070732_101333042	3300005542	Surface Soil	MSFEYRYQVTMDGVRVGTVEAEYHGRAVWHIAHPAFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0066701_100742914	3300005552	Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWRIDHPDFVDPGEPRTIERLDEALYAAGFEIMPD
Ga0066700_100826003	3300005559	Soil	MYEYRYQVTKDGQRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPED*
Ga0066700_100826414	3300005559	Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWTIYHPEFVDPGEPRTIERLDEALYAAGFEIMPDDSEA*
Ga0066670_100210583	3300005560	Soil	MQEYGHGAGSAMPYDYRYQVTKDGKRVGSVEAEYHGRAVWSIEHPDFVDPGEPRTIERLDQALYAAGFEIMPDD*
Ga0070664_1011848462	3300005564	Corn Rhizosphere	VPYDDHDYYKYRYQVTKQGQRVGSIEAEYHGRAVWVIDHPDFVDPGEPRTMERLDAALYAAGFEVMPED*
Ga0066705_104356251	3300005569	Soil	MQEYGHGAGSAMPYDYRYQVTKDGKRVGSVEAEYHGRAVWSIEHPDFVDPGEPRTIERLDQALYAAGFEIMP
Ga0066702_100969623	3300005575	Soil	MHNMYEYRYQVTKNGLRVGSLEAEYHGRATSTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0066702_102513491	3300005575	Soil	MPYDYRYQVTKDGKRVGSVEAEYHGRAVWSIEHPDFVDPGEPRTIERLDQALYAAGFEIMPDD*
Ga0068854_1000966654	3300005578	Corn Rhizosphere	MYEYRYQVTRDGRKVGWVEAEYHGPAVWEVRHPDFIDPGEPRTMERLDQALYAHGFEVVPDE*
Ga0066903_1008578301	3300005764	Tropical Forest Soil	VTFDYRYQVIKDGVRVGSVHAEYHGRALWTIDHPEFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0066903_1028505102	3300005764	Tropical Forest Soil	MTFDYRYQVMKDGERVGLVEAEYHGRARWTITHPAFVDPGEPRTMERLDDALYAAGF
Ga0066903_1033809831	3300005764	Tropical Forest Soil	MTLEYRYQVLKNGVRVGSVAAEWHGRAEWTIDHPDFRDPGEPRTIERLDDALYAAGFEIMPDD*
Ga0075436_1011693162	3300006914	Populus Rhizosphere	MAFDYRYQVTKNGVRVGTVEAEYHGRAIWRIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0066710_1027993852	3300009012	Grasslands Soil	MYEYRYQVTKDGLRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPED
Ga0066710_1038718132	3300009012	Grasslands Soil	MHTMYEYRYQVTKNGLRVGSLEAEYHGRATWTIDHPDFIDPGEPRTIERLDEALYAAGFEIMPDD
Ga0099830_108849641	3300009088	Vadose Zone Soil	MYEYRYQVTKDGQRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0099828_100698023	3300009089	Vadose Zone Soil	MYEYRYQVTKNGRRVGSLEAEYHGRAIWTIDHPDFVDPGEPHTIERLDEALYAAGFEIMPDD*
Ga0099827_101834182	3300009090	Vadose Zone Soil	MYEYRYQVTKDGLRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0099827_104967081	3300009090	Vadose Zone Soil	VTIFPYEYRYQVTKDGRKVGSVTAEYHGRAVWSIEHPDFVDPGEPRTIERLDEALYAAGFEVMPED*
Ga0066709_1024511092	3300009137	Grasslands Soil	MYEYRYQVTKNGLRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPED*
Ga0126376_122777842	3300010359	Tropical Forest Soil	MTLEYRYQVLKHGVRVGSVQAEWHGRATWTIDHPDFRDPGEPRTIERLDDALYAAGFEIMPDD*
Ga0137392_102980963	3300011269	Vadose Zone Soil	MYEYRYQVTKNGRRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0137391_108482993	3300011270	Vadose Zone Soil	MYEYRYQVTKNGHRVGSLEAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0137391_109135792	3300011270	Vadose Zone Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWRIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDDSDGSASA*
Ga0137393_101798992	3300011271	Vadose Zone Soil	MYEYRYQVTKNGLRVGSLEAEYHGRAIWTIDHPDFVDPGEPHTIERLDEALYAAGFEIMPDD*
Ga0137389_106839511	3300012096	Vadose Zone Soil	MYEYRYQVMKNGQRVGSLEAEYHGRAMWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0137388_119744982	3300012189	Vadose Zone Soil	VTSFPYEYRYQVTKDGRKVGSVTAEYHGRAVWSIKHPDFVDPGEPRTIERLDEALYAAGFEVMPED*
Ga0137399_109235411	3300012203	Vadose Zone Soil	MYEYRYQVTKNGHRVGTLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0137362_109525782	3300012205	Vadose Zone Soil	MYEYRYQVTKDGQRVGSLEAEYHGRAIWSIDHPDFVDPGETRTIERLDEALYAAGFEIMPED*
Ga0137381_110969491	3300012207	Vadose Zone Soil	RPDATDSQGLGNMTFDYRYQVVKDGARVGSVSAEYHGRAVWDISHPDFVDPGEPRTIERLDDALYKAGFEIMPDD*
Ga0137379_104605981	3300012209	Vadose Zone Soil	DGLRVGSVEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPED*
Ga0137379_109229962	3300012209	Vadose Zone Soil	MTFDYRYQVVKDGACVGSVSAEYHGRAVWDISHPDFVDPGEPRTIERLDDALYKAGFEIMPDD*
Ga0137379_110708681	3300012209	Vadose Zone Soil	MYEYRYQVTKNGLRVGSLEAEYHGRATWTIDHPDFIDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0137378_101085652	3300012210	Vadose Zone Soil	MTFDYRYQVVKDGARVGSVSAEYHGRAVWDISHPDFVDPGEPRTIERLDDALYKAGFEIMPDD*
Ga0137377_111517601	3300012211	Vadose Zone Soil	YRYQVTKDGLRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPED*
Ga0150985_1014600863	3300012212	Avena Fatua Rhizosphere	SSDLVTKDGVRVGSVEAEWHGRAEWSIDHPDFRDPGEPRTIERLDEALYRAGFEIMPDD*
Ga0150985_1021034701	3300012212	Avena Fatua Rhizosphere	EYRYQVTRDGLRVGTVEAEFRGRAIWQIEHPDFVDPGEPRTIERLDDALYALGFELLPDGSAG*
Ga0150985_1098095011	3300012212	Avena Fatua Rhizosphere	MAFDYQYQVFKDGVRVGTVVAEYHGRAEWTISHPDFVDPGEPRTIERLDEVLYAAGFEIMPDD*
Ga0137371_102107312	3300012356	Vadose Zone Soil	MPEASFNKVMALEYRYQVTKDGVRVGSVEAEYHGRAVWQIQHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0137384_103341092	3300012357	Vadose Zone Soil	MPEASFNKVMALEYRYQVTKDGVRVGSVEAEYHGRAVWQIQHPDFVDPGEPRTIERLDEALYAAGFEIIPDD*
Ga0137390_114278291	3300012363	Vadose Zone Soil	FEYRYQILKNGRRVGSIEAEYHGRAVWTIAHPDFVDPGEPRTIERLDEALYAAGFEVMPDD*
Ga0150984_1037157443	3300012469	Avena Fatua Rhizosphere	TLEYRYQVTKDGVRVGSVEAEWHGRAEWSIDHPDFRDPGEPRTIERLDEALYRAGFEIMPDD*
Ga0150984_1041004391	3300012469	Avena Fatua Rhizosphere	QYQVFKDGVRVGTVVAEYHGRAEWTISHPDFVDPGEPRTIERLDEVLYAAGFEIMPDD*
Ga0137397_106733312	3300012685	Vadose Zone Soil	VTKNGQRVGSLQAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0137416_120977822	3300012927	Vadose Zone Soil	VTIFPYEYRYQVTKDGRKVGSVTAEYHGRAVWTIAHPDFVDPGEPRTIERLDEALYAAGFEVMPED*
Ga0126369_128498041	3300012971	Tropical Forest Soil	MAFDYRYQVMKDGVRVGSVEAEYHGRARWTIDHPEFVDPGEPRTIERLDEVLYAAGFEIMPDD*
Ga0120179_10750352	3300013763	Permafrost	MRYRYRYQITKNGERVGSVEAEYHGRADWTIEHPDFVDPGEPRTIERLDDALYAAGFEIMPDD*
Ga0120111_10054238	3300013764	Permafrost	NGEWVGSVESEYHGRANWTIEHPDFVDPGEPRTIERLDDALYAAGFEIMPDD*
Ga0120111_11150422	3300013764	Permafrost	MYDYRYQVTKNGLRVGSLEAEYHGRARWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD*
Ga0120109_10685071	3300014052	Permafrost	MRYRYRYQITKNGERVGSVEAEYHGRAAWTIDHPDFVDPGEPRTIERLDDALYAAGFEIMPDD*
Ga0120149_10806352	3300014058	Permafrost	MRYRYRYQITKNGERVGSVEAEYHGRAAWTIEHPDFVDPGEPRTIERLDDALYAAGFEIMPDD*
Ga0134073_100473371	3300015356	Grasslands Soil	MPYDYRYQVTKDGKRVGSVEAEYHGRAVWSIEPPDFVDPGEPRTIERLDQALYAAGFEIM
Ga0134073_102509731	3300015356	Grasslands Soil	LSFEYRYQVTKNGDRVGSVEAEYHGRANWVIDHPDFVDPGEPRTIERLNAALYAAGFEIMPDD*
Ga0163161_113078112	3300017792	Switchgrass Rhizosphere	VTYEYRYQVTRDGLRVGTVEAEFRGRAIWHIEHPDFVDPGEPRTIERLDDALYALGFELLPDGSTG
Ga0066667_122903032	3300018433	Grasslands Soil	MHNMYEYRYQVTKNGLRVGSLEAEYHGRATWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0066662_101041013	3300018468	Grasslands Soil	GSAMPYDYRYQVTKDGKRVGSVEAEYHGRAVWSIEHPDFVDPGEPRTIERLDQALYAAGFEIMPDD
Ga0066662_104927442	3300018468	Grasslands Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWTIYHPEFVDPGEPRTIERLDEALYAAGFEIMPDDSEA
Ga0213882_100327053	3300021362	Exposed Rock	VGFEYRYQVIKNGVRVGSVAAEWHGRAEWSIDHPDFHDPGEPRTIERLDEALYAAGFEIMPDD
Ga0213882_101376741	3300021362	Exposed Rock	MADEYPYRYQVLRDGERVGTVESEYHGRAIWRIEHPAFIDPGEPRTIERLDRALYALGFEIMPDD
Ga0213882_102130862	3300021362	Exposed Rock	GMRVGTVEAEYHGRAIWQIEHPDFIDPGEPRTIERLDEALYAAGFEIMPDD
Ga0213874_101902661	3300021377	Plant Roots	HDMADEYPYRYQVLRDGERVGTVEAEYHGRAIWRIEHPAFIDPGEPRTIERLDRALYALGFEIMPDD
Ga0213874_102187842	3300021377	Plant Roots	MVFDYRYQVTKDGVRVGTIEAEFHGRAIWQIDHPDFVDPGEPRPIDRLDDALYAAGFEIMPDD
Ga0213874_104041042	3300021377	Plant Roots	RYQVIKNGVRVGTVEAEYHGRATWQIDHPDFVDPGEPHTIERLDQALYAAGFEVMPDD
Ga0213876_100072487	3300021384	Plant Roots	NGERVGTAEAEYHGRAIWTIDHPAFQDPGEPRTIERLDQALYALGFELVPDD
Ga0213876_101581082	3300021384	Plant Roots	MSVGFEYRYQVIKNGVRVGSVAAEWHGRAEWCIDHPDFHDPGEPRTIERLDEALYAAGFEIMPDD
Ga0213853_103596138	3300021861	Watersheds	MTMLGAIGHTYRYQITKNGQRVGTVRAEYHGRAEWTIDHPEFVDPGEPRTIARLDDALYAAGFEIMPDD
Ga0224712_104162492	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MSFDYHYQVTKDGVRVGSVMAEYHGRAEWSIDHPDFVDPGEPRTIERLDQALYAAGFEIMPDD
Ga0137417_13842192	3300024330	Vadose Zone Soil	MCGFGGYGYRYRYQITKDGQRVGSVEAEYHGRAAWTIDHPDFVDPGEPRTIERLDDALYAAGFEIMPDD
Ga0207684_102757393	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGQRVGSLEAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0207684_109334052	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGLRVGSLEAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0207693_108864981	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	DGERVGSVEAEYHGRAAWTIDHPDFVDPGEPRTIERLDDALYAAGFEIMPDE
Ga0207663_105222182	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTFEYRYQVLKNGVRVGSVAAEWHGRAEWSIDHPDFRDPGEPRTIERLDEALYAAGFEIMPDD
Ga0207646_106008382	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MYEYRYQVTKNGLRVGSLEAEYHGRATWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0207646_112354542	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	QVQNMYEYRYQVTKNGQRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0207664_102074783	3300025929	Agricultural Soil	AGLRTWDGMNYEYRYQVIKNGVRVGTVEAEYHGRATWQIQHPDFVDPGEPHTIERLDQALYAAGFEVMPDD
Ga0207640_101022162	3300025981	Corn Rhizosphere	MYEYRYQVTRDGRKVGWVEAEYHGPAVWEVRHPDFIDPGEPRTMERLDQALYAHGFEVVPDE
Ga0209055_10689592	3300026309	Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWTIDHPEFVDPGEPRTIERLDEALYAAGFEIM
Ga0209647_11005233	3300026319	Grasslands Soil	MYEYRYQVTKNGQRVGSLEAEYYGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGF
Ga0209803_10777381	3300026332	Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWTIDHPEFVDPGEPRTIERLDEALYAAGFEIMPDDSEA
Ga0209160_10555061	3300026532	Soil	MPYEYRYQVTRHGERVGSVTAEYHGRAIWTIYHPEFVDPGEPRTIERLDEALYAAGFEIMPDDSE
Ga0209580_100486832	3300027842	Surface Soil	MSFEYRYQVTMDGVRVGTVEAEYHGRAVWHIAHPAFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0209166_100213416	3300027857	Surface Soil	MHYSYRYQVTKDGQRVGTVEAEYHGRAAWTIDHPDFVDPGEPRTIERLDDALYAAGFEIMPDD
Ga0209166_103812121	3300027857	Surface Soil	MSEATARSYCYQITKNGQKVGSVQAEYHGRAAWTIDHPDFTDPGEPRTIERLDEALYAAG
Ga0209166_103975892	3300027857	Surface Soil	MSFDYRYQVTKNGLRVGTIEAEYHGRAVWQIEHPDFVDPGEPRTIERLDAVLYAAGFEVMPDD
Ga0209283_106630612	3300027875	Vadose Zone Soil	MYEYRYQVTKNGQRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0209590_106933141	3300027882	Vadose Zone Soil	MYEYRYQVTKDGLRVGSLEAEYHGRAIWSIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0306921_127613822	3300031912	Soil	GGFQMNMTFEYRYQVTKNGIRVGSVEAEYHGRALWQIEHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0307471_1031059571	3300032180	Hardwood Forest Soil	MYEYRYQVTKNGQRVGSLLAEYHGRAIWTIDHPDFVDPGEPRTIERLDEALYAAGFEIMPDD
Ga0372943_1130179_171_362	3300034268	Soil	VAYEYRYQVVKDGRRVGSVQAEYHGRAVWSIEHPDFVDPGEPRTMERLDEALYAAGFEVMPDD
Ga0372946_0495827_358_546	3300034384	Soil	MFEYRYQVTKDGQRVGFVEAEYHGRALWQIDHPDFVDPGEPRTMQRLDEALYAAGFEVMPDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085241

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences