Metagenome / Metatranscriptome Family F085239

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085239
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	42 residues
Representative Sequence	HPRERVGELPPGVAYMPKPWQPLNVLIAAEQALASGRGN
Number of Associated Samples	92
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.83 %
% of genes near scaffold ends (potentially truncated)	83.78 %
% of genes from short scaffolds (< 2000 bps)	90.09 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.784 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.117 % of family members)
Environment Ontology (ENVO)	Unclassified (31.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.649 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.37% β-sheet: 0.00% Coil/Unstructured: 74.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF03401	TctC	9.91
PF12706	Lactamase_B_2	9.01
PF04392	ABC_sub_bind	5.41
PF11154	DUF2934	5.41
PF00753	Lactamase_B	3.60
PF13545	HTH_Crp_2	2.70
PF00072	Response_reg	1.80
PF13185	GAF_2	0.90
PF13358	DDE_3	0.90
PF00583	Acetyltransf_1	0.90
PF03797	Autotransporter	0.90
PF06912	DUF1275	0.90
PF13701	DDE_Tnp_1_4	0.90
PF05726	Pirin_C	0.90
PF00989	PAS	0.90
PF13340	DUF4096	0.90
PF00343	Phosphorylase	0.90
PF12847	Methyltransf_18	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	9.91
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.41
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.90
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.90
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.78 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.78 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.78 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.68 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65.77 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	33.33 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.22 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.13 %
Unclassified	root	N/A	16.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	7.21 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.60 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.70 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.90 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.13 %
Unclassified	root	N/A	16.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	7.21 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.60 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	0.90 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.13 %
Unclassified	root	N/A	16.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	7.21 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.80 %
unclassified Microvirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga	0.90 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.90 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.13 %
Unclassified	root	N/A	16.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	7.21 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.80 %
Microvirga sp. HBU65207	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. HBU65207	0.90 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.90 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_73559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1205	Open in IMG/M
3300000890\|JGI11643J12802_12193050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1468	Open in IMG/M
3300000955\|JGI1027J12803_101500061	Not Available	501	Open in IMG/M
3300000955\|JGI1027J12803_101952455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	557	Open in IMG/M
3300000956\|JGI10216J12902_118243602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1515	Open in IMG/M
3300002155\|JGI24033J26618_1015792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	935	Open in IMG/M
3300005093\|Ga0062594_101903367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	631	Open in IMG/M
3300005093\|Ga0062594_101987528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	621	Open in IMG/M
3300005172\|Ga0066683_10840023	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300005332\|Ga0066388_101085568	Not Available	1353	Open in IMG/M
3300005332\|Ga0066388_101340771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1237	Open in IMG/M
3300005332\|Ga0066388_102736819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	900	Open in IMG/M
3300005332\|Ga0066388_103274674	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005436\|Ga0070713_100666608	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300005446\|Ga0066686_10504533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	824	Open in IMG/M
3300005457\|Ga0070662_100992795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	718	Open in IMG/M
3300005548\|Ga0070665_101505379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300005764\|Ga0066903_100646762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1847	Open in IMG/M
3300005764\|Ga0066903_102044316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1101	Open in IMG/M
3300005843\|Ga0068860_102816134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300006914\|Ga0075436_101354688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	539	Open in IMG/M
3300007258\|Ga0099793_10537949	Not Available	582	Open in IMG/M
3300009012\|Ga0066710_104863154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300009137\|Ga0066709_100831124	All Organisms → cellular organisms → Bacteria	1341	Open in IMG/M
3300009137\|Ga0066709_100877970	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300009137\|Ga0066709_104122615	Not Available	529	Open in IMG/M
3300009143\|Ga0099792_10192013	All Organisms → cellular organisms → Bacteria → Proteobacteria	1156	Open in IMG/M
3300009143\|Ga0099792_10627865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300009156\|Ga0111538_10624904	All Organisms → cellular organisms → Bacteria → Proteobacteria	1366	Open in IMG/M
3300010043\|Ga0126380_11884554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300010046\|Ga0126384_11772380	Not Available	585	Open in IMG/M
3300010048\|Ga0126373_11253135	Not Available	808	Open in IMG/M
3300010048\|Ga0126373_11953441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	649	Open in IMG/M
3300010147\|Ga0126319_1125370	All Organisms → cellular organisms → Bacteria → Proteobacteria	1156	Open in IMG/M
3300010335\|Ga0134063_10376080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	693	Open in IMG/M
3300011270\|Ga0137391_11429083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300012096\|Ga0137389_10158318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1860	Open in IMG/M
3300012096\|Ga0137389_11011797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300012198\|Ga0137364_11125811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300012201\|Ga0137365_10553618	Not Available	844	Open in IMG/M
3300012201\|Ga0137365_10844439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	669	Open in IMG/M
3300012206\|Ga0137380_11274871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300012208\|Ga0137376_10930267	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300012210\|Ga0137378_11385204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300012211\|Ga0137377_11439066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300012212\|Ga0150985_103486002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300012349\|Ga0137387_11140788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300012361\|Ga0137360_11036709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300012362\|Ga0137361_11786531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. HBU65207	533	Open in IMG/M
3300012363\|Ga0137390_10515653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1168	Open in IMG/M
3300012532\|Ga0137373_10640109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300012911\|Ga0157301_10180334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300012957\|Ga0164303_10272219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	983	Open in IMG/M
3300012961\|Ga0164302_10510892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	850	Open in IMG/M
3300012984\|Ga0164309_11863520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300012985\|Ga0164308_12271668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300012987\|Ga0164307_11582651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	555	Open in IMG/M
3300013297\|Ga0157378_11651153	Not Available	687	Open in IMG/M
3300013297\|Ga0157378_12927137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300013308\|Ga0157375_13473695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300015371\|Ga0132258_10068146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8239	Open in IMG/M
3300015371\|Ga0132258_12543580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1280	Open in IMG/M
3300015372\|Ga0132256_100090872	All Organisms → cellular organisms → Bacteria → Proteobacteria	2949	Open in IMG/M
3300015373\|Ga0132257_101414393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	885	Open in IMG/M
3300015374\|Ga0132255_100213001	Not Available	2739	Open in IMG/M
3300016357\|Ga0182032_10298852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1270	Open in IMG/M
3300016357\|Ga0182032_10387420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1127	Open in IMG/M
3300016357\|Ga0182032_11582850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300016371\|Ga0182034_10539457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	978	Open in IMG/M
3300016387\|Ga0182040_10356223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1136	Open in IMG/M
3300017792\|Ga0163161_11353481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	620	Open in IMG/M
3300017997\|Ga0184610_1035576	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
3300018083\|Ga0184628_10378127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	741	Open in IMG/M
3300018431\|Ga0066655_10327434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1002	Open in IMG/M
3300018468\|Ga0066662_12946557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300019883\|Ga0193725_1137228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300020001\|Ga0193731_1084397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	826	Open in IMG/M
3300021344\|Ga0193719_10401678	Not Available	564	Open in IMG/M
3300025899\|Ga0207642_10032297	All Organisms → cellular organisms → Bacteria → Proteobacteria	2202	Open in IMG/M
3300026023\|Ga0207677_10490458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300026547\|Ga0209156_10049778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2232	Open in IMG/M
3300027654\|Ga0209799_1037003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	1086	Open in IMG/M
3300027903\|Ga0209488_10316197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1164	Open in IMG/M
3300028719\|Ga0307301_10048330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1306	Open in IMG/M
3300028720\|Ga0307317_10027517	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300028787\|Ga0307323_10072690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300028790\|Ga0307283_10101194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	753	Open in IMG/M
3300028802\|Ga0307503_10301945	All Organisms → cellular organisms → Bacteria → Proteobacteria	803	Open in IMG/M
3300028810\|Ga0307294_10010363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2305	Open in IMG/M
3300031093\|Ga0308197_10035099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1206	Open in IMG/M
3300031231\|Ga0170824_108023199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	923	Open in IMG/M
3300031545\|Ga0318541_10336761	Not Available	842	Open in IMG/M
3300031561\|Ga0318528_10457686	Not Available	685	Open in IMG/M
3300031572\|Ga0318515_10213604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1034	Open in IMG/M
3300031572\|Ga0318515_10723858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300031668\|Ga0318542_10715254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031668\|Ga0318542_10717958	Not Available	523	Open in IMG/M
3300031719\|Ga0306917_10235777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1397	Open in IMG/M
3300031764\|Ga0318535_10370295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300031768\|Ga0318509_10399756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300031794\|Ga0318503_10021456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1824	Open in IMG/M
3300031912\|Ga0306921_10675875	All Organisms → cellular organisms → Bacteria → Proteobacteria	1188	Open in IMG/M
3300031941\|Ga0310912_11080672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300032065\|Ga0318513_10589284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300032076\|Ga0306924_10430778	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300032076\|Ga0306924_10855962	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.78%
Host-Associated	Host-Associated	16.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.18%
Plants	Host-Associated → Plants	16.22%
Aquatic	Environmental → Aquatic	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.21%
Sediment	Environmental → Aquatic → Sediment	2.70%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.97%
Loam	Environmental → Terrestrial → Soil → Loam	7.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.70%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_01014640	2199352025	Soil	SLPLGLPRERVRDLPLGVDYIAKPWQPLNVLIAAEQALASELIR
JGI11643J12802_121930503	3300000890	Soil	TSGHPRERYRDLPAGVAYMPKPWQPLNILMFAERALASG*
JGI1027J12803_1015000611	3300000955	Soil	RVRELPPGVAYMSKPWPPLSVLMAAERALASPPGR*
JGI1027J12803_1019524552	3300000955	Soil	RIRELPPGVAYMPKPWQPLNVLIAAEQASAPARHG*
JGI10216J12902_1182436021	3300000956	Soil	KMRWPLLPVILTSGHPRERVGELPPDVAYMPKPCMPKPWQPLNVLIAAEEALATRV*
JGI24033J26618_10157922	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	NIGHPLLSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASARSG*
Ga0062594_1019033671	3300005093	Soil	LPMVLTSGHPCERAGDLPLGVGFMPKPWQPINVLIAAEKALASAR*
Ga0062594_1019875281	3300005093	Soil	MILTSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASARSG*
Ga0066683_108400231	3300005172	Soil	LPVILTSGHPRERVGELPPGVAYMSKPWQPLNVLIAAEQALASGRGN*
Ga0066388_1010855681	3300005332	Tropical Forest Soil	VVLTSGCPRECVRELPAGVVYISKPWQPLDVLVTAEQALAYARGAYARG*
Ga0066388_1013407711	3300005332	Tropical Forest Soil	SGYPRESGGELPPGVAYMPKPWQPLNVLMAAEQALASRV*
Ga0066388_1027368191	3300005332	Tropical Forest Soil	ILTSGLPRARVGDLPLGVGYMAKPWQPLDVLIAAKQALASRL*
Ga0066388_1032746741	3300005332	Tropical Forest Soil	LITNSRLSSRERVGELAPGVVYMPKPWQPLNVLIAAEQALASRL*
Ga0070713_1006666082	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ERFGDLPPGVVYMPKPWQPLNVIMIAEQALSCNRGYRSA*
Ga0066686_105045331	3300005446	Soil	PLLPVILTSGHPCERVGKLPPGVAYMRKPWQPLNVLIAAEQALASGRAN*
Ga0070662_1009927951	3300005457	Corn Rhizosphere	SGHPCERAGDLPLGVGFMPKPWQPINVLIAAEKALASAR*
Ga0070665_1015053792	3300005548	Switchgrass Rhizosphere	VILTSRLPRERVRDLPLGGDYIAKPWQPLNVLIAAEQALASGLIR*
Ga0066903_1006467623	3300005764	Tropical Forest Soil	DRIGELPPGVAYMRKPWQPLNMLIVAEQALASRV*
Ga0066903_1020443161	3300005764	Tropical Forest Soil	LPVILTSGYPRESGGELPPGVAYMPKPWQPLNVLMAAEQALASRG*
Ga0068860_1028161342	3300005843	Switchgrass Rhizosphere	GHPLEHIRELPPGVAYMPKPWQPLNVLIAAEQASAPARHG*
Ga0075436_1013546881	3300006914	Populus Rhizosphere	PRERYRDLPAGVAYMPKPWQPLNILMFAERALASG*
Ga0099793_105379491	3300007258	Vadose Zone Soil	IRELPPGVAYVPKPWQPLNVLIAAEQALAFGRGN*
Ga0066710_1048631541	3300009012	Grasslands Soil	LPMMLTSGHPLERIRELPPGVAYMPKPWQPLNVLIATEQALASGQGN
Ga0066709_1008311243	3300009137	Grasslands Soil	ERGGELPPGVGYMPKPWQPLNVLIAAEEALAFGRSN*
Ga0066709_1008779701	3300009137	Grasslands Soil	CERVGGLPAGVGYMPKPWQPLNVLIAAEQALASARRG*
Ga0066709_1041226152	3300009137	Grasslands Soil	VILTSGHPCERVGKLPPGVAYMRKPWQPLNVLIAAEQALASSGRAN*
Ga0099792_101920131	3300009143	Vadose Zone Soil	REHGGELPPLVGYMPKPWQPLNVLIAAERALASGRSG*
Ga0099792_106278652	3300009143	Vadose Zone Soil	SGHPRERVGELPPGVAYMPKPWQPLNVLIATEQALASGRGN*
Ga0111538_106249042	3300009156	Populus Rhizosphere	LPMILTSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASARSG*
Ga0126380_118845542	3300010043	Tropical Forest Soil	PVILTSGHPRERVGELAPGVVYMPKPWKPLNVLIAAEQALASRL*
Ga0126384_117723801	3300010046	Tropical Forest Soil	HVRDLPRGVDYMPKPWQPLNVLIAAEQALASGRS*
Ga0126373_112531351	3300010048	Tropical Forest Soil	ESGGELPPGVAYMPKPWQPLNALMAAEQALASRV*
Ga0126373_119534411	3300010048	Tropical Forest Soil	RFFPWILTSGLPRERVGQLPPGVGPWQPLNVLIAAGEAIERRS*
Ga0126319_11253702	3300010147	Soil	MILTSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASGRSG*
Ga0134063_103760801	3300010335	Grasslands Soil	TSGHSRERVGGLPAGVGYMAKPWQPLNVLIAAEQALASARRG*
Ga0134121_108031081	3300010401	Terrestrial Soil	RDRVGHLPLGVGYMAKPWQPLDVLIAAKQALASERR*
Ga0137391_114290831	3300011270	Vadose Zone Soil	HPRERVGELPPGVAYMPKPWQPLNVLIAAEQALASGRGN*
Ga0137389_101583183	3300012096	Vadose Zone Soil	MILTSGHPLERIRELPPGVAYMPKPWQPLNVLIAAEQAADR*
Ga0137389_110117973	3300012096	Vadose Zone Soil	KLRWPLLPMILTSGHPLERIRELPPGVAYMPKPWQPLAAEQALASRV*
Ga0137364_111258111	3300012198	Vadose Zone Soil	HPLERIRELPPGVAYMPKPWQPLNVLIAAERALPSRGDGPR*
Ga0137365_105536181	3300012201	Vadose Zone Soil	HVGELPPGVAYLPKPWQPLSVLIAAEQALGSLRHS*
Ga0137365_108444392	3300012201	Vadose Zone Soil	SGFPCERVGDLPLGVAYMPKPWQPLNVLIAAEQALASARPG*
Ga0137380_112748711	3300012206	Vadose Zone Soil	ILTSGHPLERIRELPPGVAYMPKPWQPLNVLIATEQALAFRV*
Ga0137376_109302672	3300012208	Vadose Zone Soil	LPMILTSGHPLKRIRELPPGVAFMPKPWKPLNVLIAAEQALASGRGN*
Ga0137378_113852043	3300012210	Vadose Zone Soil	ILTSGHPLERIRELPPGVAYMPKPWQPLNVLIAAERALPSRGDAPR*
Ga0137377_114390662	3300012211	Vadose Zone Soil	PMILTSGHPLERIRELPPGVAYMPKPWQPLNVLIATEQALAFRV*
Ga0150985_1034860021	3300012212	Avena Fatua Rhizosphere	LTSGHSCERAGDLPPGVVYMPKPWQPLNVLMIAEQALSSSRGYRSP*
Ga0137387_111407881	3300012349	Vadose Zone Soil	ERVGELPPGVAYMPKPWQPLNVLIAAEQALASARVG*
Ga0137360_110367092	3300012361	Vadose Zone Soil	PIILTSGHPLKRIRELPPGVAYMPKPWKPLNVLIAAEQALASRRGN*
Ga0137361_117865312	3300012362	Vadose Zone Soil	SGHPLERIRELPPGVAYMPKPWQPLNVLIATEQALHFGCDVRH*
Ga0137390_105156532	3300012363	Vadose Zone Soil	ERVGELPPGVAYMPKPWQPLNVLIVAEQVLASGRY*
Ga0137373_106401091	3300012532	Vadose Zone Soil	ILTSGHPLERIRELPPGVAYMPKPWQPLNVLIAAEQASAPARHG*
Ga0157301_101803342	3300012911	Soil	MILTSGHPREHEGELPPLVGYMPKPWQPLNVLIAAERALASARSG*
Ga0164303_102722191	3300012957	Soil	IRELPPGVAYMPKPWQPLNVLIAAEQASAPARHG*
Ga0164302_105108921	3300012961	Soil	GHPRERFGDLPPGVVYMPKPWQPLNVIMIAEQALSCNRGYRSA*
Ga0164309_118635201	3300012984	Soil	ERIRELPPGVAYMPKPWQPLNVLIATEQALAFRV*
Ga0164308_122716681	3300012985	Soil	MILTSGHPLERIRELPPGVAYMPKPWQPLNVLIAAEQVLASRV*
Ga0164307_115826511	3300012987	Soil	LPRERFRDLPLGVDYIAKPWHPFNVLITAEQALAPELSR*
Ga0157378_116511531	3300013297	Miscanthus Rhizosphere	SELPRERVRDLPLGGDCIAKPWQPLNVLIAAEQALASGLIR*
Ga0157378_129271371	3300013297	Miscanthus Rhizosphere	RAGDLPPGVVYMPKPWQPLNVLIIAEQALSSSCGYRSA*
Ga0157375_134736952	3300013308	Miscanthus Rhizosphere	PLEHIRELPPGVAYMPKPWQPLNVLIAAEQASAPARHG*
Ga0132258_100681469	3300015371	Arabidopsis Rhizosphere	SGHPRKRGRELPPGVAYISKPWQPLNVLMAAERALASPPGR*
Ga0132258_125435802	3300015371	Arabidopsis Rhizosphere	MILTSGLPRERVRDLPVGVDYIAKPWHPLNVLITVEQALAPELIR*
Ga0132256_1000908721	3300015372	Arabidopsis Rhizosphere	ILTSGLPRDRLRDLPFGVDYIAKPWQPLSLLIAAEQALASRPIR*
Ga0132257_1014143932	3300015373	Arabidopsis Rhizosphere	SGHPREHGGGLPPLVGYMPKPWQPLNVLIAAERALASARSG*
Ga0132255_1002130011	3300015374	Arabidopsis Rhizosphere	GRELPPGVAYISKPWQPLNVLMAAERALASPPGR*
Ga0182041_106597701	3300016294	Soil	PRARVGDLPLGVGYMAKPWQPLDVLIAAKQALSSERR
Ga0182032_102988521	3300016357	Soil	TSGHPLEHIRELPPGVAYMPKPWQPLNVLIAAEQALASRA
Ga0182032_103874203	3300016357	Soil	MFGSASGHPRERIGELPPGVAYMPNPLQPLKALIAAEQTLASRV
Ga0182032_115828501	3300016357	Soil	SGHPRERVGELPPGVAYMPKPWQPLQVLIAAEQALASRM
Ga0182034_105394573	3300016371	Soil	PLEHIRELPPGVAYMPKPWQPLNVLIAAEQALASGQGN
Ga0182040_103562231	3300016387	Soil	MFGSASGHPRERIGELPPGVAYMPKPWQPLTVLIAAEQALASRL
Ga0163161_113534811	3300017792	Switchgrass Rhizosphere	SGLPRERVCDLPFGVDYIAKPWQPLNVLIAAEQALASGLIR
Ga0184610_10355761	3300017997	Groundwater Sediment	TSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASGRSG
Ga0184611_11000201	3300018067	Groundwater Sediment	SGHPLDEHMRQFPPGVAYIPKPWQPLNLLVSAEEALALLH
Ga0184628_103781272	3300018083	Groundwater Sediment	PLLPMILTSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASARSG
Ga0066655_103274342	3300018431	Grasslands Soil	ILTSGHPCERVGKLPPGVAYMRKPWQPLNVLIAAEQALASGRAN
Ga0066662_129465571	3300018468	Grasslands Soil	VILTSGHPREHVGKLPPGVAYMPKPWQPLNVLIAAEQALASA
Ga0193725_11372282	3300019883	Soil	TSGHPLERIRELPPGVAYMPKPWQPLNVLIAAEQASAPARHG
Ga0193731_10843971	3300020001	Soil	ARERFGELPPGVVYLPKPWQPLNVLMIAEQALSSSRGYRSA
Ga0193719_104016781	3300021344	Soil	HGGELPPLVGYMPKPWLPLNVLIAAERALASGRSG
Ga0207642_100322973	3300025899	Miscanthus Rhizosphere	EHGGELPPLVGYMPKPWQPLNVLIAAERALASARSG
Ga0207677_104904582	3300026023	Miscanthus Rhizosphere	VILTSRLPRERVRDLPLGVDYIAKPWQPLNVLIAAEQALASGLIR
Ga0209156_100497786	3300026547	Soil	PVILTSGHPCERVGKLPPGVAYMRKPWQPLNVLIAAEQALASGRAN
Ga0209799_10370031	3300027654	Tropical Forest Soil	GYPRESGGELPPGVAYMPKPWQPLNVLMAAEQALTSRV
Ga0209488_103161971	3300027903	Vadose Zone Soil	REHGGELPPLVGYMPKPWQPLNVLIAAERALASGRSG
Ga0307301_100483301	3300028719	Soil	LTSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASARSG
Ga0307317_100275172	3300028720	Soil	LTSGYPRERVRELPPGVAYMPKPWQPLNVLIAAEQARASAH
Ga0307318_101743531	3300028744	Soil	TSGHPLDEHLRQFPPGVAYIPKPWQPLNLLVAAEEALASLH
Ga0307323_100726902	3300028787	Soil	MILTSGHPREHGGELPPLVGYMPKPWQPLNVLIAAERALASGRSG
Ga0307283_101011942	3300028790	Soil	LTSGHPRERFGELPPGVAYMPKPWQPLNVLMIAERALSSSRGYRSA
Ga0307287_102394932	3300028796	Soil	HPLDEHLRQFPPGVAYIPKPWQPLNLLVAAEEALASLH
Ga0307503_103019451	3300028802	Soil	REHGGELPPLVGYMPKPWQPLNVLIAAERALASARSG
Ga0307294_100103633	3300028810	Soil	VLTSGHPRERFGELPPGVVYMPKPWQPLNVLMIAEQALSSSRGYRSA
Ga0308197_100350992	3300031093	Soil	GELPPGVAYMPKPWQPLNVLMIAEQALSSSRGYRSA
Ga0170824_1080231992	3300031231	Forest Soil	MILTSGLPRERVRDLPVGVDYIAKPWHPLNVLITVEQALAPE
Ga0318541_103367611	3300031545	Soil	MFGSASGHPRERIGELPPGVAYMPKPLQPLKALIAAEQ
Ga0318528_104576863	3300031561	Soil	MFGSASGHPRERIGELPPGVAYMPKPLQPLKALIAAEQTLA
Ga0318515_102136042	3300031572	Soil	MFGSASGHPRERIGELPPGVAYMPKPLQPLKALIAAEQTLASRV
Ga0318515_107238582	3300031572	Soil	LPMILTSGHPLEHIRELPPGVAYMPKPWQPLNVLIAAEQALASGQGN
Ga0318542_107152541	3300031668	Soil	HPLEHIRELPPGVAYMPKPWQPLNVLIAAEQALASGQGN
Ga0318542_107179581	3300031668	Soil	MFGSASGYPRERIGELPPGVAYMPNPLQPLKALIAAEQTLASRV
Ga0306917_102357772	3300031719	Soil	MFGSASGYPRERIGELPPGVAYMPKPLQPLKALIAAEQTLASRV
Ga0318535_103702951	3300031764	Soil	LPMILTSGHPLEHIRELPPGVAYMPKPWQPLNVLIAAEQALASRA
Ga0318509_103997562	3300031768	Soil	GHPLEHIRELPPGVAYMPKPWQPLNVLIAAEQALASGQGN
Ga0318503_100214562	3300031794	Soil	PRERVAELPPGVAYMRKPWHPFNVLIAAEQALASQV
Ga0306921_106758751	3300031912	Soil	RERVGKLPPGVAYMPKPWQPLEVLIAAEQALASRV
Ga0310912_110806722	3300031941	Soil	SGHPCERVGELPPNVAYMPKSWQPLKVLIAAEQALTSLCDAPALA
Ga0318513_105892841	3300032065	Soil	LLPMILTSGHPLEHIRELPPGVAYMPKPWQPLNVLIAAEQALASGQGN
Ga0306924_104307782	3300032076	Soil	LLPVILTSGLPRDRVGVLPLGVGYMAKPWQPLDVLIAAKQALSSERR
Ga0306924_108559623	3300032076	Soil	ILTSGVPRDRVRDLPLGVGYMAKPWQPLDVLIAAKQALLSERR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085239

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences