Metagenome / Metatranscriptome Family F085227

Basic Information
Family ID	F085227
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	91 residues
Representative Sequence	MKALVFLLVLPVLIGFASEMVFRDAKRASFVAAVGSALAVFLGVIVLDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Number of Associated Samples	88
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.76 %
% of genes near scaffold ends (potentially truncated)	41.44 %
% of genes from short scaffolds (< 2000 bps)	81.98 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (52.252 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (43.243 % of family members)
Environment Ontology (ENVO)	Unclassified (27.928 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.234 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 65.93% β-sheet: 0.00% Coil/Unstructured: 34.07%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13302	Acetyltransf_3	48.65
PF01726	LexA_DNA_bind	24.32
PF04392	ABC_sub_bind	6.31
PF00903	Glyoxalase	3.60
PF13442	Cytochrome_CBB3	0.90
PF12681	Glyoxalase_2	0.90
PF04020	Phage_holin_4_2	0.90
PF06850	PHB_depo_C	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.31
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.90
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.90
COG4553	Poly-beta-hydroxyalkanoate depolymerase	Lipid transport and metabolism [I]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.25 %
Unclassified	root	N/A	47.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.25 %
Unclassified	root	N/A	47.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.25 %
Unclassified	root	N/A	47.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.21 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.80 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	1.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Cytobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Cytobacillus	1.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Cytobacillus firmus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Cytobacillus → Cytobacillus firmus	1.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_108815511	Not Available	554	Open in IMG/M
3300004781\|Ga0062379_10221767	Not Available	512	Open in IMG/M
3300005093\|Ga0062594_100029980	All Organisms → cellular organisms → Bacteria → Proteobacteria	2475	Open in IMG/M
3300005208\|Ga0069003_10085726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	587	Open in IMG/M
3300005217\|Ga0069005_10245195	Not Available	518	Open in IMG/M
3300005328\|Ga0070676_10092240	All Organisms → cellular organisms → Bacteria → Proteobacteria	1857	Open in IMG/M
3300005330\|Ga0070690_100295127	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300005331\|Ga0070670_100111406	All Organisms → cellular organisms → Bacteria → Proteobacteria	2358	Open in IMG/M
3300005334\|Ga0068869_100005980	All Organisms → cellular organisms → Bacteria → Proteobacteria	7693	Open in IMG/M
3300005335\|Ga0070666_10013191	All Organisms → cellular organisms → Bacteria → Proteobacteria	5239	Open in IMG/M
3300005356\|Ga0070674_101188368	Not Available	677	Open in IMG/M
3300005466\|Ga0070685_10346383	Not Available	1014	Open in IMG/M
3300006047\|Ga0075024_100730576	Not Available	547	Open in IMG/M
3300006057\|Ga0075026_100009692	All Organisms → cellular organisms → Bacteria → Proteobacteria	4140	Open in IMG/M
3300006057\|Ga0075026_100574694	Not Available	659	Open in IMG/M
3300006953\|Ga0074063_12725980	Not Available	629	Open in IMG/M
3300009036\|Ga0105244_10561840	Not Available	525	Open in IMG/M
3300009176\|Ga0105242_10845790	Not Available	910	Open in IMG/M
3300009553\|Ga0105249_10963672	Not Available	921	Open in IMG/M
3300011444\|Ga0137463_1199608	Not Available	750	Open in IMG/M
3300014326\|Ga0157380_10297276	All Organisms → cellular organisms → Bacteria → Proteobacteria	1485	Open in IMG/M
3300018053\|Ga0184626_10054805	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300018073\|Ga0184624_10130862	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300018083\|Ga0184628_10014947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3785	Open in IMG/M
3300018481\|Ga0190271_10270420	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300021344\|Ga0193719_10251048	Not Available	748	Open in IMG/M
3300025315\|Ga0207697_10080570	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300025901\|Ga0207688_10128273	Not Available	1485	Open in IMG/M
3300025903\|Ga0207680_10054527	All Organisms → cellular organisms → Bacteria	2405	Open in IMG/M
3300025907\|Ga0207645_10000234	All Organisms → cellular organisms → Bacteria → Proteobacteria	45978	Open in IMG/M
3300025908\|Ga0207643_10088627	All Organisms → cellular organisms → Bacteria → Proteobacteria	1801	Open in IMG/M
3300025925\|Ga0207650_10090461	All Organisms → cellular organisms → Bacteria → Proteobacteria	2337	Open in IMG/M
3300025926\|Ga0207659_11300856	Not Available	624	Open in IMG/M
3300025934\|Ga0207686_10994441	Not Available	680	Open in IMG/M
3300025937\|Ga0207669_11228337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	635	Open in IMG/M
3300026075\|Ga0207708_10420771	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300026121\|Ga0207683_10000921	All Organisms → cellular organisms → Bacteria → Proteobacteria	27051	Open in IMG/M
3300026320\|Ga0209131_1038549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2757	Open in IMG/M
3300027870\|Ga0209023_10662515	Not Available	605	Open in IMG/M
3300028649\|Ga0302162_10099992	Not Available	675	Open in IMG/M
3300028652\|Ga0302166_10055516	Not Available	836	Open in IMG/M
3300028652\|Ga0302166_10118550	Not Available	600	Open in IMG/M
3300028665\|Ga0302160_10020599	All Organisms → cellular organisms → Bacteria → Proteobacteria	1209	Open in IMG/M
3300028665\|Ga0302160_10051580	Not Available	834	Open in IMG/M
3300028679\|Ga0302169_10060179	Not Available	889	Open in IMG/M
3300028679\|Ga0302169_10067307	Not Available	843	Open in IMG/M
3300028732\|Ga0302264_1075522	Not Available	794	Open in IMG/M
3300028733\|Ga0302261_1166629	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300028739\|Ga0302205_10058736	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300028743\|Ga0302262_10091830	Not Available	1043	Open in IMG/M
3300028770\|Ga0302258_1012760	All Organisms → cellular organisms → Bacteria → Proteobacteria	1826	Open in IMG/M
3300028770\|Ga0302258_1056972	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300028802\|Ga0307503_10258611	Not Available	855	Open in IMG/M
3300028856\|Ga0302295_1098105	Not Available	650	Open in IMG/M
3300028865\|Ga0302291_10020203	All Organisms → cellular organisms → Bacteria → Proteobacteria	2055	Open in IMG/M
3300028869\|Ga0302263_10093048	Not Available	1196	Open in IMG/M
3300028870\|Ga0302254_10043748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1606	Open in IMG/M
3300028870\|Ga0302254_10101433	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1051	Open in IMG/M
3300028870\|Ga0302254_10412329	Not Available	501	Open in IMG/M
3300029923\|Ga0311347_10035343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3193	Open in IMG/M
3300029980\|Ga0302298_10021847	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1785	Open in IMG/M
3300029980\|Ga0302298_10067358	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1091	Open in IMG/M
3300029987\|Ga0311334_10079292	All Organisms → cellular organisms → Bacteria → Proteobacteria	2388	Open in IMG/M
3300029987\|Ga0311334_10238087	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300029989\|Ga0311365_10052072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3496	Open in IMG/M
3300029989\|Ga0311365_11526289	Not Available	573	Open in IMG/M
3300030000\|Ga0311337_10597931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	949	Open in IMG/M
3300030003\|Ga0302172_10024549	All Organisms → cellular organisms → Bacteria → Proteobacteria	1751	Open in IMG/M
3300030019\|Ga0311348_10584605	Not Available	833	Open in IMG/M
3300030047\|Ga0302286_10070821	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300030114\|Ga0311333_10188378	All Organisms → cellular organisms → Bacteria → Proteobacteria	1598	Open in IMG/M
3300030294\|Ga0311349_10362323	Not Available	1370	Open in IMG/M
3300030294\|Ga0311349_11454297	Not Available	636	Open in IMG/M
3300030294\|Ga0311349_11523245	Not Available	620	Open in IMG/M
3300030339\|Ga0311360_10475428	Not Available	1003	Open in IMG/M
3300030491\|Ga0302211_10033004	All Organisms → cellular organisms → Bacteria → Proteobacteria	1474	Open in IMG/M
3300030838\|Ga0311335_10450486	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300030943\|Ga0311366_10651027	All Organisms → cellular organisms → Bacteria → Terrabacteria group	916	Open in IMG/M
3300030943\|Ga0311366_10722102	Not Available	866	Open in IMG/M
3300030943\|Ga0311366_10908365	Not Available	762	Open in IMG/M
3300031232\|Ga0302323_100074192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3206	Open in IMG/M
3300031232\|Ga0302323_100106014	All Organisms → cellular organisms → Bacteria	2718	Open in IMG/M
3300031232\|Ga0302323_101581332	Not Available	739	Open in IMG/M
3300031232\|Ga0302323_102100519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	642	Open in IMG/M
3300031521\|Ga0311364_11012166	Not Available	829	Open in IMG/M
3300031521\|Ga0311364_11599167	Not Available	643	Open in IMG/M
3300031726\|Ga0302321_102561868	Not Available	595	Open in IMG/M
3300031730\|Ga0307516_10828348	Not Available	588	Open in IMG/M
3300031873\|Ga0315297_10249232	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1472	Open in IMG/M
3300031902\|Ga0302322_103345303	Not Available	550	Open in IMG/M
3300031902\|Ga0302322_103579722	Not Available	531	Open in IMG/M
3300031997\|Ga0315278_11666462	Not Available	608	Open in IMG/M
3300031997\|Ga0315278_12114814	Not Available	523	Open in IMG/M
3300032018\|Ga0315272_10494929	Not Available	610	Open in IMG/M
3300032143\|Ga0315292_11127439	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300032156\|Ga0315295_10178366	All Organisms → cellular organisms → Bacteria	2126	Open in IMG/M
3300032164\|Ga0315283_10463035	All Organisms → cellular organisms → Bacteria → Proteobacteria	1378	Open in IMG/M
3300032173\|Ga0315268_10768438	All Organisms → cellular organisms → Bacteria → Terrabacteria group	963	Open in IMG/M
3300032177\|Ga0315276_10538097	Not Available	1256	Open in IMG/M
3300032256\|Ga0315271_10001159	All Organisms → cellular organisms → Bacteria → Proteobacteria	15764	Open in IMG/M
3300032256\|Ga0315271_10393238	Not Available	1160	Open in IMG/M
3300032256\|Ga0315271_10713790	Not Available	861	Open in IMG/M
3300032275\|Ga0315270_10907319	Not Available	582	Open in IMG/M
3300032275\|Ga0315270_11011852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Cytobacillus → Cytobacillus firmus	551	Open in IMG/M
3300032516\|Ga0315273_10475894	All Organisms → cellular organisms → Bacteria → Proteobacteria	1675	Open in IMG/M
3300034127\|Ga0370489_0009303	All Organisms → cellular organisms → Bacteria	2547	Open in IMG/M
3300034129\|Ga0370493_0036070	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300034149\|Ga0364929_0317632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Cytobacillus → Cytobacillus firmus	535	Open in IMG/M
3300034156\|Ga0370502_0026956	All Organisms → cellular organisms → Bacteria → Proteobacteria	1794	Open in IMG/M
3300034354\|Ga0364943_0127333	Not Available	905	Open in IMG/M
3300034417\|Ga0364941_028810	Not Available	1170	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.98%
Host-Associated	Host-Associated	18.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.56%
Aquatic	Environmental → Aquatic	23.42%
Plants	Host-Associated → Plants	18.02%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	44.14%
Freshwater	Environmental → Aquatic → Freshwater	15.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.61%
Soil	Environmental → Terrestrial → Soil	11.71%
Sediment	Environmental → Aquatic → Sediment	6.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.50%
Floodplain	Environmental → Terrestrial → Floodplain	2.70%
Marine	Environmental → Aquatic → Marine	1.80%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	44.14%
Lake	Environmental → Aquatic → Freshwater → Lake	13.51%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	5.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Loam	Environmental → Terrestrial → Soil → Loam	2.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.70%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.80%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.90%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	44.14%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	13.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.60%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.70%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.90%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	43.24%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	13.51%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.90%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.90%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.90%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004781	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005208	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2	Environmental	Open in IMG/M
3300005217	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027870	Freshwater and sediment microbial communities from Lake Erie, Canada (SPAdes)	Environmental	Open in IMG/M
3300028649	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_2	Environmental	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300028733	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4	Environmental	Open in IMG/M
3300028739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_3	Environmental	Open in IMG/M
3300028743	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4	Environmental	Open in IMG/M
3300028770	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_4	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028856	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_4	Environmental	Open in IMG/M
3300028865	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4	Environmental	Open in IMG/M
3300028869	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4	Environmental	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029980	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_3	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030491	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_3	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032018	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300034127	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_16	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034156	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_18	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1088155112	3300001213	Wetland	MKALLLLLVLPVCIGYASEMIFRDPRKASFVAALGSALVVFLGVIVLDPDGGWNWVAAVLVSPLPVALGVVTVLFCYGRLQM
Ga0062379_102217671	3300004781	Wetland Sediment	VRVAGLGCILRQALSNMKALVFLLVLPVLIGFASEMVFRDAKKASFTAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYGRLQMRKPGHERGA*
Ga0062594_1000299802	3300005093	Soil	VPRTASNVKALVFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0069003_100857262	3300005208	Natural And Restored Wetlands	MAPHAASVSGKSAMKALVFLLVLPVLIGFASEMVFRDAKRASFAAALGSALIVFLGVIVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGV*
Ga0069005_102451952	3300005217	Natural And Restored Wetlands	MKALLLLLVLPVCIGYASEMVFRDARKASFAAALGSALVVFLGVIALDPDGGWNWVAAVLVSPLPVALGVVTVLFCYGRLQMRKPGRHHGA*
Ga0070676_100922402	3300005328	Miscanthus Rhizosphere	VFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0070690_1002951272	3300005330	Switchgrass Rhizosphere	VFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0070670_1001114064	3300005331	Switchgrass Rhizosphere	VKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFAYDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKSGRHHGA*
Ga0068869_1000059805	3300005334	Miscanthus Rhizosphere	VKALVFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0070666_100131919	3300005335	Switchgrass Rhizosphere	VKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0070674_1011883682	3300005356	Miscanthus Rhizosphere	LIGFASEMVFRDARRASFAAAVGSALVVFLGVFAYDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0070685_103463831	3300005466	Switchgrass Rhizosphere	VFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYRRLQMRKPGRHHGA*
Ga0075024_1007305761	3300006047	Watersheds	MKALVFLLVFPVLIGFASEMVFRDAKKASFAAAVGSALVVFLGVIVLDPAGTWSWIAALLVSPLPIALGVVTVLYCYGRLQMRK
Ga0075026_1000096923	3300006057	Watersheds	MKPLVILLVLPVLIGIASEFYFRDAKKASLAAALGSGIVVIFGVIVLDPAGTWNWIAALLVSPLPMAFAVVTVLFCYGRLQMRRRSHGHGHGA*
Ga0075026_1005746942	3300006057	Watersheds	MKALVLLLLLPVCIGFVSEMIFRDARRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPSPHHGA*
Ga0074063_127259801	3300006953	Soil	MKPFVILVVLPVLIGMASELHFRDARHASFTAAIGAALAVLAGVRCLDPDGTWSWLAAVLVSPLPIAFAVVTVLLFYGRGHMRGRRTKHGA*
Ga0105244_105618401	3300009036	Miscanthus Rhizosphere	VKALVFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHH
Ga0105242_108457902	3300009176	Miscanthus Rhizosphere	VTALVFLLVLPVIIGFASGMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0105249_109636722	3300009553	Switchgrass Rhizosphere	PRPVPRTASNVKALVFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0137463_11996082	3300011444	Soil	MKALLILLVLPVLIGIASEFYFRDARKASFAAALGSALAVILGVIVLDPAGTWNWVAALLVSPLSVAFGVVTVLYCYGRLQMRRRGHGRGA*
Ga0157380_102972761	3300014326	Switchgrass Rhizosphere	MVAAAPRPVPRIASNVKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA*
Ga0184626_100548053	3300018053	Groundwater Sediment	MKPLLILLVLPVIIGYASEMYFRDTRRASFAAAVGSALVVFLGVFLFDPAATWNWVAALLVSPLPIAFGVVTVLFCYGRLQMRRRGHGRGA
Ga0184624_101308621	3300018073	Groundwater Sediment	RPAPRTAPNVKALVFLLVLPILIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0184628_100149476	3300018083	Groundwater Sediment	VFLLVLPILIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0190271_102704201	3300018481	Soil	VFLLVLPILIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGRHHGA
Ga0193719_102510482	3300021344	Soil	SPRAAKDMKPLLILLVLPVIIGYVSEMYFRDTRRASFAAALGSALVVFLGVFLFDPAAAWNWVAALLVSPLPIAFGVVTVLFCYGRLQMRRRGHGRGA
Ga0207697_100805702	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207688_101282733	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VPRTASNVKALVFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207680_100545275	3300025903	Switchgrass Rhizosphere	ASNVKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207645_1000023429	3300025907	Miscanthus Rhizosphere	VKALVFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207643_100886274	3300025908	Miscanthus Rhizosphere	VFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207650_100904614	3300025925	Switchgrass Rhizosphere	VKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFAYDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKSGRHHGA
Ga0207659_113008562	3300025926	Miscanthus Rhizosphere	LPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207686_109944412	3300025934	Miscanthus Rhizosphere	IGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207669_112283371	3300025937	Miscanthus Rhizosphere	YSVQMAAAAPRPVPRTASNVKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFAYDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207708_104207711	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RPVPRTASNVKALVFLLVLPVIIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0207683_100009214	3300026121	Miscanthus Rhizosphere	VKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0209131_10385493	3300026320	Grasslands Soil	MKPLLILLLLPVVIGFVSEMYFRDTRRASFAAALGSALAVFLGVFLLDPAATWNWVAALLVSPLPIAFGVVTVLFCYGRLQMRRRHHGRGA
Ga0209023_106625152	3300027870	Freshwater And Sediment	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYGRLQMRKPGRH
Ga0302162_100999921	3300028649	Fen	VSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPRPSHGA
Ga0302166_100555162	3300028652	Fen	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLTMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0302166_101185502	3300028652	Fen	LVLLLLLPVCIGFVSEMIFRDAKRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTALYCYGRLQMRKPRPSHGA
Ga0302160_100205993	3300028665	Fen	MKALVLLLLLPVCIGFVSEVIFRDAKRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTALYCYGRLQMRKPRPSHGA
Ga0302160_100515801	3300028665	Fen	KARMKALVLLLLLPVCIGFVSEMIFRDARRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0302169_100601792	3300028679	Fen	MKALVLLLLLPVCIGFVSEVIFRDAKRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTALYCYGRLQMRKP
Ga0302169_100673072	3300028679	Fen	MKALVLLLLLPVCIGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0302264_10755222	3300028732	Fen	CMFRKPDMKALVLLLLLPVLIGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0302261_11666291	3300028733	Fen	ARFRKPAMKALVLLLLLPVCIGFVSEMIFRDAKRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTALYCYGRLQMRKPRPSHGA
Ga0302205_100587362	3300028739	Fen	MKALVLLLLLPVCIGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPRPGHGA
Ga0302262_100918302	3300028743	Fen	VAAPRCMFRKPDMKALVLLLLLPVLIGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0302258_10127604	3300028770	Fen	SEVIFRDAKRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTALYCYGRLQMRKPRPSHGA
Ga0302258_10569721	3300028770	Fen	PASGLKSNMKALVFLLVLPVLIGFASEMVFRDAKNASFAAAVGSALAVFLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0307503_102586111	3300028802	Soil	MAAAAPRPAPRTASNVKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0302295_10981051	3300028856	Fen	KPAMKALVLLLLLPVCIGFVSEMVFRDAKRASFAAALGSALAVLLGVLVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGHLQMRKPRPSHGA
Ga0302291_100202034	3300028865	Fen	MKALVLLLLLPVLIGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0302263_100930483	3300028869	Fen	MKALVLLLLLPVCIGFVSEMVFRDAKRASFAAALGSALAVLLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGHLQMRKPRPSHGA
Ga0302254_100437483	3300028870	Fen	MKALVLLLLLPVCIGYVSEMVFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0302254_101014331	3300028870	Fen	MKALVFLLVLPVLIGFASEMVFRDAKNASFAAAVGSALAVFLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0302254_104123292	3300028870	Fen	MKALVLLLLLPVCIGFVSEMVFRDAKRASFAAALGSALAVLLGVLVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0311347_100353435	3300029923	Fen	MKALVFLLVLPVLIGFASEMVFRDAKMASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLTMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0302298_100218472	3300029980	Fen	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLTMALGVVTVLYCYGRLQMRRPDHERGA
Ga0302298_100673581	3300029980	Fen	MKALVFLLVLPVLIGFASEMVLRDAKHASFAAAVGSALAVLLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0311334_100792922	3300029987	Fen	MKALVLLLVLPVCIGFVSEMVFRDAKRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPRPGHGA
Ga0311334_102380872	3300029987	Fen	MKALVLLLLLPVCIGFVSEMVFRDAKRASFAAALGSALAVLLGVLVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGHLQMRKPRPSHGA
Ga0311365_100520721	3300029989	Fen	IGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0311365_115262892	3300029989	Fen	KALVLLLLLPVCIGVVSEMVFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0311337_105979312	3300030000	Fen	MKALVFLLVLPVLIGFASEMVLRDAKHASFAAAVGSALAVFLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0302172_100245492	3300030003	Fen	MKALVLLLLLPVCIGFVSEMIFRDAKRASFAAALGSALGVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTALYCYGRLQMRKPRPSHGA
Ga0311348_105846052	3300030019	Fen	RFRKPAMKALVLLLLLPVCIGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0302286_100708212	3300030047	Fen	MKALVLLLVLPVCIGFVSEMVFRDAKRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0311333_101883782	3300030114	Fen	MKALVFLLVLPVLIGFASEMVFRDAKNASFAAAVASALAVFLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0311349_103623234	3300030294	Fen	LVFLLVLPVLIGFASEMVFRDAKNASFAAAVGSALAVLLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0311349_114542972	3300030294	Fen	MKALVLLLLLPVCIGYVSEMVFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCY
Ga0311349_115232452	3300030294	Fen	IGFASEMVFRDAKRASFVAAVGSALAVFLGVIVLDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0311360_104754282	3300030339	Bog	MKALVFLLVFPVLIGFASEMVFRDAKRASFVAAVGSALAVFLGVIVLDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0302211_100330044	3300030491	Fen	RKPAMKALVLLLLLPVCIGYVSEMVFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0311335_104504863	3300030838	Fen	KALVFLLVLPVLIGFASEMVFRDAKNASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0311366_106510272	3300030943	Fen	NMKALVFLLVLPVLIGFASEMVLRDAKHASFAAAVGSALAVFLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0311366_107221022	3300030943	Fen	AAPRCMFRKPDMKALVLLLLLPVLIGFVSEMIFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0311366_109083651	3300030943	Fen	RRFRKPAMKALVLLLLLPVCIGFVSEMVFRDAKRASFAAALGSALAVLLGVLVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGHLQMRKPRPSHGA
Ga0302323_1000741925	3300031232	Fen	MKALVLLLVLPVCIGFVSEMVFRDAKRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPRPGHGV
Ga0302323_1001060145	3300031232	Fen	MKALVFLLVLPVLIGFASEMVFRDAKRASFVAAVGSALAVFLGVIVLDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0302323_1015813322	3300031232	Fen	MKALVLLLLLPVCIGYVSEMVFRDARRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRH
Ga0302323_1021005192	3300031232	Fen	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLTMALGVVTVLYCYGRLQMRKPGRHPGA
Ga0311364_110121661	3300031521	Fen	LVLPVLIGFASEMVFRDAKRASFVAAVGSALAVFLGVIVLDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0311364_115991672	3300031521	Fen	MQALVFLLVLPVLIGFASEMVFRDAKNASFAAAVGSALAVLLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHEHGG
Ga0302321_1025618682	3300031726	Fen	MKALVFLLVLPVLIGFASEMVLRDAKHASFAAAVGSALAVFLGVIVLDPAGAWNWVAALLVSPLPMALGVVTVLYCYGRLQMGKPTH
Ga0307516_108283481	3300031730	Ectomycorrhiza	KALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0315297_102492323	3300031873	Sediment	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYGRLQMRRPDHERGA
Ga0302322_1033453031	3300031902	Fen	MKALVFLLVLPVLIGFASEMVFRDAKNASFAAAVASALAVFLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGR
Ga0302322_1035797222	3300031902	Fen	VSEMVFRDARRASFTAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0315278_116664622	3300031997	Sediment	IGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRRPDHERGA
Ga0315278_121148141	3300031997	Sediment	MKPLLLLLVLPILIGFASEMYFRDARNASLAAALGSGIVLVLGVVVLDPAGTWNWIAALLVSPLPMAFAVVTVLFCYGRLQMRRPDHERGA
Ga0315272_104949292	3300032018	Sediment	MKALVLLLLLPVCIGFVSEMVFRDAKRAAFAAALGSALAVFLGVIILDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0315292_111274392	3300032143	Sediment	VLIGCASEMVFRDAKKASFAAAVGSALAVLLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYGRLQMRKPGHERGA
Ga0315295_101783663	3300032156	Sediment	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRRPDHERGA
Ga0315283_104630353	3300032164	Sediment	MKALVFLLVLPVLIGFASEMVFRDAKKASFTAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYGRLQM
Ga0315268_107684382	3300032173	Sediment	MKALVLLLVLPVLIGFASEMIFRDAKRASFAAALGSGIVVVLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPTHGHGA
Ga0315276_105380971	3300032177	Sediment	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYGRLQMRKPGHERGA
Ga0315271_1000115913	3300032256	Sediment	MKALVLLLLLPVCIGFVSEMVFRDAKRASFAAALGSALAVFLGVIILDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0315271_103932382	3300032256	Sediment	MKPLVILLLLPVFIGIASEFYFRDAKKASFAAALGSALAVFGGVIVLDPAGTWNWIAALLVFPLPMALGVVTVLYCYGRLQMRRRNHGRGA
Ga0315271_107137902	3300032256	Sediment	MKALVLLLVLPVLIGFASEMIFRDAKRASFAAALGSGIVVVLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPNHGHGA
Ga0315270_109073192	3300032275	Sediment	VRFQKPNMKALVLLLVLPVLIGFASEMIFRDAKRASFAAALGSGIVVVLGVIVLDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPNHGHGA
Ga0315270_110118521	3300032275	Sediment	MKALVFLLVLPVLIGFASEMVFRDAKKASFTAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYGRLQMRKPGHERGA
Ga0315273_104758944	3300032516	Sediment	MKALVFLLVLPVLIGFASEMVFRDAKKASFAAAVGSALAVFLGVIVLDPAGTWNWVAALLVSPLPIALGVVTVLYCYG
Ga0370489_0009303_79_387	3300034127	Untreated Peat Soil	MAAPARFRKPDMKALVLLLLLPVCIGYVSEMVFRDAKRASFAAALGSALAVFLGVIVLDPAGTWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPGPRHGA
Ga0370493_0036070_872_1147	3300034129	Untreated Peat Soil	MKALVLLLVLPVCIGFVSEMVFRDARRASFAAALGSALAVFLGVIVLDPAGSWNWIAALLVSPLPIALGVVTVLYCYGRLQMRKPRPSHGA
Ga0364929_0317632_111_386	3300034149	Sediment	VKALVFLLVLPILIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0370502_0026956_879_1199	3300034156	Untreated Peat Soil	MAAAAPRPEPRTSSNVKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWIAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0364943_0127333_492_812	3300034354	Sediment	MAAAAPRPVPRTSSHVKALVFLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA
Ga0364941_028810_3_263	3300034417	Sediment	FLLVLPVLIGFASEMVFRDARRASFAAAVGSALVVFLGVFVFDPAGTWNWVAALLVSPLPMALGVVTVLYCYGRLQMRKPGRHHGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085227

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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