Metagenome / Metatranscriptome Family F085226

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085226
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	71 residues
Representative Sequence	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELG
Number of Associated Samples	86
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.83 %
% of genes near scaffold ends (potentially truncated)	36.94 %
% of genes from short scaffolds (< 2000 bps)	82.88 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.360 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.441 % of family members)
Environment Ontology (ENVO)	Unclassified (39.640 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.757 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.46% β-sheet: 36.08% Coil/Unstructured: 48.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
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SCOP family	SCOP domain	Representative PDB	TM-score
d.198.1.1: Type III secretory system chaperone	d4gf3a_	4gf3	0.62915
d.198.1.1: Type III secretory system chaperone	d1ry9a_	1ry9	0.62319
e.43.1.1: Capz alpha-1 subunit	d3aa0a_	3aa0	0.62017
e.3.1.1: beta-Lactamase/D-ala carboxypeptidase	d2v2ff_	2v2f	0.61043
d.20.1.0: automated matches	d3fn1b_	3fn1	0.60716

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF05406	WGR	20.72
PF00239	Resolvase	11.71
PF14659	Phage_int_SAM_3	4.50
PF07589	PEP-CTERM	2.70
PF04365	BrnT_toxin	1.80
PF13384	HTH_23	1.80
PF14657	Arm-DNA-bind_4	1.80
PF07885	Ion_trans_2	0.90
PF10387	DUF2442	0.90
PF13700	DUF4158	0.90
PF01053	Cys_Met_Meta_PP	0.90
PF02796	HTH_7	0.90
PF01609	DDE_Tnp_1	0.90
PF11185	DUF2971	0.90
PF11746	DUF3303	0.90
PF01381	HTH_3	0.90
PF00805	Pentapeptide	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3831	WGR domain, predicted DNA-binding domain in MolR	Transcription [K]	20.72
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	11.71
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	11.71
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	1.80
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.90
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.90
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.90
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.90
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.90
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.90
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.90
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.90
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.90
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.90
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.90
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.90
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.90
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.90
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.90
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.90
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
All Organisms	root	All Organisms	39.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
cellular organisms	root	All Organisms → cellular organisms	39.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.12 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.80 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.80 %
Methylococcales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcales incertae sedis	0.90 %
Thalassobaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae	0.90 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.90 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.90 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.80 %
Candidatus Methylumidiphilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcales incertae sedis → Candidatus Methylumidiphilus	0.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Oceanibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Oceanibaculum	0.90 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.90 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.80 %
Candidatus Methylumidiphilus alinenensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcales incertae sedis → Candidatus Methylumidiphilus → Candidatus Methylumidiphilus alinenensis	0.90 %
Oceanibaculum pacificum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Oceanibaculum → Oceanibaculum pacificum	0.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.90 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10073871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	869	Open in IMG/M
3300003351\|JGI26346J50198_1012349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	824	Open in IMG/M
3300004092\|Ga0062389_102701080	Not Available	662	Open in IMG/M
3300004268\|Ga0066398_10166012	Not Available	563	Open in IMG/M
3300005454\|Ga0066687_10174034	Not Available	1156	Open in IMG/M
3300005764\|Ga0066903_104630987	Not Available	732	Open in IMG/M
3300005764\|Ga0066903_105181942	Not Available	690	Open in IMG/M
3300006953\|Ga0074063_12817525	Not Available	527	Open in IMG/M
3300007255\|Ga0099791_10094831	Not Available	1369	Open in IMG/M
3300007258\|Ga0099793_10622299	Not Available	542	Open in IMG/M
3300009143\|Ga0099792_10390258	Not Available	849	Open in IMG/M
3300009792\|Ga0126374_11227580	Not Available	602	Open in IMG/M
3300010043\|Ga0126380_10064201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2051	Open in IMG/M
3300010048\|Ga0126373_12856260	Not Available	539	Open in IMG/M
3300010358\|Ga0126370_10634691	Not Available	928	Open in IMG/M
3300010362\|Ga0126377_13583975	Not Available	502	Open in IMG/M
3300010366\|Ga0126379_13533460	Not Available	524	Open in IMG/M
3300010376\|Ga0126381_101116246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1139	Open in IMG/M
3300010376\|Ga0126381_101830561	Not Available	876	Open in IMG/M
3300010376\|Ga0126381_102779206	Not Available	699	Open in IMG/M
3300010398\|Ga0126383_10974345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	936	Open in IMG/M
3300011120\|Ga0150983_11372823	Not Available	769	Open in IMG/M
3300011120\|Ga0150983_12774411	Not Available	631	Open in IMG/M
3300012198\|Ga0137364_10454149	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300012203\|Ga0137399_10023722	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4080	Open in IMG/M
3300012203\|Ga0137399_10071857	Not Available	2597	Open in IMG/M
3300012203\|Ga0137399_10591331	Not Available	933	Open in IMG/M
3300012685\|Ga0137397_10221216	All Organisms → cellular organisms → Bacteria → Proteobacteria	1409	Open in IMG/M
3300012685\|Ga0137397_11180961	Not Available	552	Open in IMG/M
3300012917\|Ga0137395_10498904	Not Available	876	Open in IMG/M
3300012923\|Ga0137359_10054117	All Organisms → cellular organisms → Bacteria	3491	Open in IMG/M
3300012924\|Ga0137413_11650418	Not Available	525	Open in IMG/M
3300012925\|Ga0137419_10141485	Not Available	1726	Open in IMG/M
3300012927\|Ga0137416_10241684	Not Available	1471	Open in IMG/M
3300016270\|Ga0182036_10390700	All Organisms → cellular organisms → Bacteria → Proteobacteria	1082	Open in IMG/M
3300016319\|Ga0182033_10009797	Not Available	5343	Open in IMG/M
3300016341\|Ga0182035_10204964	Not Available	1563	Open in IMG/M
3300016341\|Ga0182035_11066901	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300016341\|Ga0182035_11909426	Not Available	539	Open in IMG/M
3300016371\|Ga0182034_10047478	All Organisms → cellular organisms → Bacteria	2813	Open in IMG/M
3300016387\|Ga0182040_10034686	All Organisms → cellular organisms → Bacteria → Proteobacteria	2995	Open in IMG/M
3300020170\|Ga0179594_10421594	Not Available	507	Open in IMG/M
3300020199\|Ga0179592_10012293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcales incertae sedis → Candidatus Methylumidiphilus → Candidatus Methylumidiphilus alinenensis	3719	Open in IMG/M
3300020579\|Ga0210407_10009983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7089	Open in IMG/M
3300020579\|Ga0210407_10029021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4111	Open in IMG/M
3300020579\|Ga0210407_10441367	Not Available	1018	Open in IMG/M
3300020579\|Ga0210407_10828266	Not Available	712	Open in IMG/M
3300020580\|Ga0210403_10314030	Not Available	1284	Open in IMG/M
3300020580\|Ga0210403_10328330	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300020580\|Ga0210403_11516056	Not Available	504	Open in IMG/M
3300020581\|Ga0210399_10154357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Oceanibaculum → Oceanibaculum pacificum	1899	Open in IMG/M
3300020581\|Ga0210399_10836019	Not Available	750	Open in IMG/M
3300020583\|Ga0210401_11035973	Not Available	679	Open in IMG/M
3300021168\|Ga0210406_10897984	Not Available	667	Open in IMG/M
3300021178\|Ga0210408_10177318	Not Available	1692	Open in IMG/M
3300021384\|Ga0213876_10616172	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300021432\|Ga0210384_11279457	Not Available	638	Open in IMG/M
3300021478\|Ga0210402_10666924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	962	Open in IMG/M
3300021478\|Ga0210402_11396317	Not Available	627	Open in IMG/M
3300021478\|Ga0210402_11962022	Not Available	511	Open in IMG/M
3300021479\|Ga0210410_10104864	All Organisms → cellular organisms → Bacteria	2498	Open in IMG/M
3300021559\|Ga0210409_11388074	Not Available	578	Open in IMG/M
3300021560\|Ga0126371_12753178	Not Available	596	Open in IMG/M
3300021560\|Ga0126371_13939610	Not Available	500	Open in IMG/M
3300025916\|Ga0207663_10181681	Not Available	1503	Open in IMG/M
3300026555\|Ga0179593_1102182	Not Available	1710	Open in IMG/M
3300026557\|Ga0179587_10223566	Not Available	1198	Open in IMG/M
3300027654\|Ga0209799_1134540	Not Available	563	Open in IMG/M
3300027698\|Ga0209446_1119278	Not Available	680	Open in IMG/M
3300027703\|Ga0207862_1126921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	765	Open in IMG/M
3300029636\|Ga0222749_10007735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4344	Open in IMG/M
3300029636\|Ga0222749_10128862	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300031543\|Ga0318516_10038007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2573	Open in IMG/M
3300031545\|Ga0318541_10185966	Not Available	1148	Open in IMG/M
3300031561\|Ga0318528_10690580	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300031715\|Ga0307476_10077756	All Organisms → cellular organisms → Bacteria	2311	Open in IMG/M
3300031719\|Ga0306917_10568245	Not Available	891	Open in IMG/M
3300031744\|Ga0306918_10008832	All Organisms → cellular organisms → Bacteria → Proteobacteria	5610	Open in IMG/M
3300031744\|Ga0306918_11458252	Not Available	524	Open in IMG/M
3300031747\|Ga0318502_10724424	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300031763\|Ga0318537_10107814	All Organisms → cellular organisms → Bacteria → Proteobacteria	1032	Open in IMG/M
3300031768\|Ga0318509_10245700	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300031770\|Ga0318521_10381880	Not Available	838	Open in IMG/M
3300031771\|Ga0318546_10067271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2278	Open in IMG/M
3300031771\|Ga0318546_10945005	Not Available	607	Open in IMG/M
3300031795\|Ga0318557_10025641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2342	Open in IMG/M
3300031797\|Ga0318550_10109604	Not Available	1307	Open in IMG/M
3300031819\|Ga0318568_10297556	Not Available	1002	Open in IMG/M
3300031832\|Ga0318499_10302505	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300031879\|Ga0306919_10102520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2016	Open in IMG/M
3300031879\|Ga0306919_11151911	Not Available	590	Open in IMG/M
3300031880\|Ga0318544_10318609	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300031890\|Ga0306925_10636020	All Organisms → cellular organisms → Bacteria → Proteobacteria	1123	Open in IMG/M
3300031893\|Ga0318536_10634961	Not Available	533	Open in IMG/M
3300031910\|Ga0306923_10081563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3626	Open in IMG/M
3300031910\|Ga0306923_11558319	Not Available	689	Open in IMG/M
3300031912\|Ga0306921_11504026	Not Available	736	Open in IMG/M
3300031942\|Ga0310916_10632112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	908	Open in IMG/M
3300031945\|Ga0310913_10167490	Not Available	1525	Open in IMG/M
3300031945\|Ga0310913_10574176	Not Available	800	Open in IMG/M
3300031946\|Ga0310910_10352420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1163	Open in IMG/M
3300031959\|Ga0318530_10190344	Not Available	840	Open in IMG/M
3300031962\|Ga0307479_10686157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300032010\|Ga0318569_10272881	Not Available	786	Open in IMG/M
3300032041\|Ga0318549_10326540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	691	Open in IMG/M
3300032054\|Ga0318570_10043606	All Organisms → cellular organisms → Bacteria → Proteobacteria	1837	Open in IMG/M
3300032067\|Ga0318524_10502819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300032089\|Ga0318525_10154143	Not Available	1180	Open in IMG/M
3300032091\|Ga0318577_10300101	Not Available	768	Open in IMG/M
3300032261\|Ga0306920_101219805	Not Available	1086	Open in IMG/M
3300032261\|Ga0306920_103953843	Not Available	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.10%
Host-Associated	Host-Associated	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.50%
Aquatic	Environmental → Aquatic	3.60%
Plants	Host-Associated → Plants	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.50%
Freshwater	Environmental → Aquatic → Freshwater	3.60%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.29%
Loam	Environmental → Terrestrial → Soil → Loam	7.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.60%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	59.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100738711	3300003218	Bog Forest Soil	MTLARWFTAHEYGFFPIERAALGACDLSVLHVGGEWQWLVRRNGRDAAEGAARADVEAREQAEAIALSVDRSFQCGGQ*
JGI26346J50198_10123491	3300003351	Bog Forest Soil	APGPAGVLGLRFRARLSMTLARWFTAHEYGFFPIERAALGACDLSVLHVGGEWQWLVRRNGRDAAEGAARADVEAREQAEAIALSVDRSFQCGGQ*
Ga0062389_1027010801	3300004092	Bog Forest Soil	MTAAYWFTQKEQGGFPIERAALGSCDLSMLHVGGEWQWLVRQAGRDVAEGAARAAVDAQRQAEAVALKLVG*
Ga0066398_101660121	3300004268	Tropical Forest Soil	GGFPVEKAALGDCDLSMLYVGGEWEWLVRQAGCDVAEGAARSAVDARRQAEVVTLELG*
Ga0066687_101740344	3300005454	Soil	MKACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAASSADDARREAEAVALRLLERGPNP*
Ga0066903_1046309871	3300005764	Tropical Forest Soil	MTTAHWFTQHERGGFPVERAALGTCDLSVLHAGGEWQWLVRQAGRDVAEGAACTFDDARREAIAAAVASNNTVTTVG*
Ga0066903_1051819422	3300005764	Tropical Forest Soil	MKACWFTVREQGGFPVERAALGPCELSALHVGGEWQWLVRQDGCDVAEGSASSSEAARREAEAVALKLLGEDGPNL*
Ga0074063_128175252	3300006953	Soil	MKAYWFTSHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEAVALRLLERGPNP*
Ga0099791_100948313	3300007255	Vadose Zone Soil	MKAYWFTVREQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEAMALRFWSLRSSAWR*
Ga0099793_106222991	3300007258	Vadose Zone Soil	MKACWFTGHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEEAAPSADNARREAEAV
Ga0099792_103902582	3300009143	Vadose Zone Soil	MKACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGVAPSADDARRGAEAVALRLLERGPNP*
Ga0126374_112275802	3300009792	Tropical Forest Soil	MTTAHWFTQHERGGFPIEKAALGSCDLSILHVGGEWQWLVRQAGRDVAEGAARTADDARREAIAAAVAIELD*
Ga0126380_100642014	3300010043	Tropical Forest Soil	VVHHLEHGGFPVEKAALGDCDLSMLYVGGEWEWLVRQAGCDVAEGAARSAVDARRQAEVVTLELG*
Ga0126373_128562602	3300010048	Tropical Forest Soil	MTTAHWFTQHERGGFPIEKAALGSCDLSILHVGGEWQWLVRQAGRDVAEGAARTADDARREAIVAVVALELD*
Ga0126370_106346912	3300010358	Tropical Forest Soil	MLTLVGFCYNCPMTHWFTHLERGGFPIERAALGTCDLSVLHVGGEWQWLVRQAGRDVAEGAARTSV
Ga0126377_135839752	3300010362	Tropical Forest Soil	MTKACWFTHLEHGGFPIERAVLGTCDLSVLHVDGEWQWLVRQAGRDIAEGAARTADDARREAIAVVVALELD*
Ga0126379_135334602	3300010366	Tropical Forest Soil	MTRAYWFTEHEDGGFPLEKAALGLCDLSALHVGGEWQWLVRQAGRDVAEGAAPGLAEAKQDAETVAPALG*
Ga0126381_1011162464	3300010376	Tropical Forest Soil	MTTACWFTHLEPGGFPIERAALGTCDLSVLHVDGEWQWLVRQAGRDIAEGAARTADDARREAIAAAVAIELD*
Ga0126381_1018305612	3300010376	Tropical Forest Soil	MSLMLAHWFTQHEQGGFPIEKAALGSCDLSVLHVGGNWEWLVRQDDRDVAEGTPRRLVDAKRQAETVAVNLG*
Ga0126381_1027792062	3300010376	Tropical Forest Soil	MPARLDRGDALCYSMVMAHWFTQHEHGGFPIERAALGACDLSVLHVGGEWQWFVQQAGRDVAEGAARTADNARREAIAAAVALELD*
Ga0126383_109743453	3300010398	Tropical Forest Soil	MGLCQMTAAYWFAQHEHGGFPIERAALGSCDLSLLHVDGKWQWLVRQADRDVAEGAAPTADDAKCDAEAVAIELG*
Ga0150983_113728231	3300011120	Forest Soil	MKAYWFTVHEQGGFPVESAALGGCDLSIMHIAGEWQWLVQQDGRDVAEGASSSCDDARQEAEVVAVKLLDPAP*
Ga0150983_127744112	3300011120	Forest Soil	MKTHWFTVREQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDVAEGAASSADDARRE
Ga0137364_104541491	3300012198	Vadose Zone Soil	MTLAHWFTQHEDGGFPVQRAALGSCDLSMMHIGGEWQWLVCQAGCDVAEGAATAADEAQRQAEAAALELG*
Ga0137399_100237224	3300012203	Vadose Zone Soil	MKAYWFTVREQGGFPVERAALGSCELSVLHIAGEWQWLVRQEGRDVKEGAAPSADDAKLEAETVAVKLFDPAP*
Ga0137399_100718573	3300012203	Vadose Zone Soil	MKACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEAVALRLLERGPNP*
Ga0137399_105913312	3300012203	Vadose Zone Soil	MTKEQFETVAHWFTQHEQGGFPVERAALGSCELSVLHISGEWQWLVRRDGRDVAEGTARAVDDAQREAEAVALKLQLTASLPCPPV*
Ga0137397_102212161	3300012685	Vadose Zone Soil	EQGGFPVERAALGSCDLSVLHIGGEWRWLVRQAGRDVAEGAAPAADDARREAEAVALKLG
Ga0137397_111809611	3300012685	Vadose Zone Soil	MKTCWFTQREPGGFTVERAALGSCDLSVLRIGAEWHWLVRQAGRDVAEGASSAADDARREAEAVALKLG*
Ga0137395_104989042	3300012917	Vadose Zone Soil	MKACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDIAEGAAPSADDARQEAEAVALRLLERGPNP*
Ga0137359_100541175	3300012923	Vadose Zone Soil	LRSIWELAGERAALSSCDLSVLHVGGEWQWLVRQAGCDVAEGAARDQVDAQRQADSVALKLG*
Ga0137413_116504181	3300012924	Vadose Zone Soil	MTKEQFETVAHWFTQHEQGGFPVERAALGSCELSVLHISGEWQWLVRRDGRDVAEGTARAVDDAQREAEAVALKLG*
Ga0137419_101414852	3300012925	Vadose Zone Soil	MKANWFTVREQGGFPVERAALGSCELSVLHIAGEWQWLVRQEGRDVKEGAAPSADDAKLEAETVAVKLFDPAP*
Ga0137416_102416843	3300012927	Vadose Zone Soil	MKACWFTVHEQGGFPVERAALGSRDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEAVALRLLERGPNP*
Ga0182036_103907003	3300016270	Soil	GILGPMIAQWFTQHEHGGFPLERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELGLWPT
Ga0182033_100097976	3300016319	Soil	MIAQWFTQHEHGGFPIERAVLGACDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0182035_102049642	3300016341	Soil	MTTASWFTHLERGGFQIERAALRSCELSVLYVGGEWQWLVRQAGRDVAEGAARTFVDAQQQAEVVALELGCASVESAA
Ga0182035_110669013	3300016341	Soil	QHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0182035_119094261	3300016341	Soil	FPVEKAALGSCDLSVLDVGGERQWLVRRDGRDVPEGTAQAAVDAKQEAKSVALKLG
Ga0182034_100474782	3300016371	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAIDAQRAAEVAALELG
Ga0182040_100346863	3300016387	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEVAALELG
Ga0179594_104215941	3300020170	Vadose Zone Soil	MKACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEAVALRLLERGPNP
Ga0179592_100122933	3300020199	Vadose Zone Soil	MTKEQFETVAHWFTQHEQGGFPVERAALGSCELSVLHISGEWQWLVRRDGRDVAEGTARAVDDAQREAEAVALKLQLTASLPCPPV
Ga0210407_100099836	3300020579	Soil	MTLQAKWFTQHEHGGFPVERAALGSCDLSVLHVGGEWQWLVREAGRDVGEGTARAVVDAQRQAEEAALKFG
Ga0210407_100290212	3300020579	Soil	MKAYWLTVREEGGFPVERAALGHCELSALHIGGEWQWLVRQEGRDVAEGSAPSADDAKQEAETVALRLLDPLSP
Ga0210407_104413671	3300020579	Soil	MTKEQFETAAHWFTRREQGGFPVECAALGSCDLSVLHVGGEWQWLVRQDGRDMAEGKARAAADAKREAEAVALRLGF
Ga0210407_108282662	3300020579	Soil	MTKQQFKTAAHWFTDHEQGGFPIERAALGSCDLSVLHVGDEWQWLVRQDSRDLAEGSARAVTDAKREAEAVALKLV
Ga0210403_103140302	3300020580	Soil	MTTAQWFTQHEDGGFPIARAALGSCDLSVLHVGGEWQWLVRQDGRDVAEGAARAGVDAQRQAEAMALKLS
Ga0210403_103283302	3300020580	Soil	MKAYWFTVHEQGGFPVERATLGSCDLSVLHIAEEWQWLVRQDGRDVKEGVAPSADDAKLEAEAVAVKLLDLAP
Ga0210403_115160562	3300020580	Soil	MKTCWFTQHEQGGFPVERAALGSCDLSVLRIGGEWHWLVRQAGRDVAEGAAPAADDARREAEAVALKLDYIS
Ga0210399_101543572	3300020581	Soil	MKACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEWASKS
Ga0210399_108360193	3300020581	Soil	QRATIGSCDLSVLYVGGEWQWLVRQAGRDVAEGAARAAVDAQREAETVALKLG
Ga0210401_110359733	3300020583	Soil	MTTAQWFIQHEDGGFPIERAALGSCDLSVLHVGGEWQWLVRQAGRDMAEGAARSDVDARRAAEAIALELG
Ga0210406_108979841	3300021168	Soil	MKAYWFTVREQGGFPVERAALGSCELSVLHIAGEWQWLVRQDGRDVREGAAPSADDAKLEAEAVAVKLLDPAP
Ga0210408_101773181	3300021178	Soil	LEKQGGFPIQRAAIGSCDLSVLYVGGEWQWLVRQAGRDVAEGAARAAVDAQREAETVALKLG
Ga0213876_106161722	3300021384	Plant Roots	MTIAYWFTQREHGGFPVERAALGSCDLSVLHVGGEWQWLVRQDGRDVAEGAALAALDAQRQAEAVALKLGCDG
Ga0210384_112794571	3300021432	Soil	QLSPLEKQGGFPIQRAAIGSCDLSVLYVGGEWQWLVRQAGRDVAEGAARAAVDAQREAETVALKLG
Ga0210402_106669241	3300021478	Soil	MTLQAKWFTQHEHGGFPVERAALGSCDLSVLHVGGEWQWLVREAGRDVGEGTARAVVDATASGRGRAQVRVIS
Ga0210402_113963171	3300021478	Soil	QTLIRFPVERAALGSCDLSLLHVGGEWQWLVRQDGRDVAEGAPLSADDARQEAKAMALKLWSLRSSAWR
Ga0210402_119620222	3300021478	Soil	MKAYWLTVREEGGFPVERAALGHCELSALHIGGEWQWLVRQEGRDVAEGSAPSADDAKQEAETVAL
Ga0210410_101048641	3300021479	Soil	KACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEWASKS
Ga0210409_113880741	3300021559	Soil	EDGGFTIERAALGSCDLSVLHVGGEWQWLVRQAGRDMAEGAARSDVDARRAAEAIALELG
Ga0126371_127531781	3300021560	Tropical Forest Soil	NAAPGQHNWLMTTACWFTHLEHGGFPIERAVLSTCDLSVLHVGGEWQWLVQQAGRDVAEGAGRSAVDAQRQAEAVALELG
Ga0126371_139396101	3300021560	Tropical Forest Soil	MTTAHWFTQHERGGFPIEKAALGSCDLSILHVGGEWQWLVRQAGRDVAEGAARTADDARREAIVAVVALELD
Ga0207663_101816812	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKTCWFTQCEPGGFTVERAALGSRDLSVLRIDAEWHWLVRQGGRDVAEVASSAADDARRKAEAVALKLG
Ga0179593_11021822	3300026555	Vadose Zone Soil	MKACWFTAHEQGSFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEAVVLRLLERGPNP
Ga0179587_102235662	3300026557	Vadose Zone Soil	MTLQAKWFTQHEHGGFPVERAALGSCDLSVLHVGGEWQWLVRQAARDVAEGSAPAVVDAQRQAEAVALKFLRFPESIS
Ga0209799_11345401	3300027654	Tropical Forest Soil	GGFPVEKAALGDCDLSMLYVGGEWEWLVRQAGCDVAEGAARSAVDARRQAEVVTLELG
Ga0209446_11192782	3300027698	Bog Forest Soil	MTLARWFTAHEYGFFPIERAALGACDLSVLHVGGEWQWLVRRNGRDAAEGAARADVEAREQAEAIALSVDRSFQCGGQ
Ga0207862_11269211	3300027703	Tropical Forest Soil	MAQWFTQHERGGFPVEKAAVGGCDLSALYVGGEWQWLVRQAGRDVAEGAARSAADAKGQAENLARVVSTSCALAA
Ga0222749_100077351	3300029636	Soil	MKACWFTVHEQGGFPVERAALGSCDLSMLHIAGEWQWLVRQDGRDMAEGAAPSADDARREAEWASK
Ga0222749_101288621	3300029636	Soil	PKCDKKHCGHDFCKTMTKQQFKTAAHWFTDHEQGGFPIERAALGSCDLSVLHVGDEWQWLVRQDSRDLAEGSARAVTDAKREAEAVALKLV
Ga0318516_100380071	3300031543	Soil	MTQWFSHQQAGGVPIEKAAIGSCDLSVLHVGGEWQWLVRQAGRDVAEGAARDLADAKRAAESAARLWISG
Ga0318541_101859662	3300031545	Soil	MTIAHWFTQHEAGRFPVEKAALGSCDLSVLDVGGERQWLVRRDGRDVPEGTAQAAVDAKQEAKSVALKLG
Ga0318528_106905802	3300031561	Soil	GFERVPQLRYADWTMTTAQWFTQHERGGFPIERATLGSCELSVLHIGAEWQWLVRQAGRDVAEGAARTADDARREAIAAAMALELD
Ga0307476_100777563	3300031715	Hardwood Forest Soil	MTIACWFTQREDCGFPVERAALGSCDLSVLHIAGEWQWLVRQGGRDVAEGAAQAAADAKQEAEAVALKLG
Ga0306917_105682452	3300031719	Soil	MIAQWFTQHEHGGFPLERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELGWWPT
Ga0306918_1000883210	3300031744	Soil	VHCHGVLGPMIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0306918_114582522	3300031744	Soil	QMTRAWFTHLEHGGFPIEKAALGSCNLSALHIRGEWQWLVRQAGRDVAEGAAPRLADAQHEEEWR
Ga0318502_107244242	3300031747	Soil	MIAQWFTQHEHGGFPLERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0318537_101078143	3300031763	Soil	QHEHGGFPIERAALGSCDLSMLHIGGEWQWLVRQAGRDVAEGAARTAVDAQRAAEAVALELCCSKLRLSERGRIEAV
Ga0318509_102457001	3300031768	Soil	VLGPMIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0318521_103818801	3300031770	Soil	MTIAHWFTQHEAGRFPVEKAALGSCDLSVLDVGGERQWLVRRDGRDVPEGTAQAAVDAKQEAK
Ga0318546_100672711	3300031771	Soil	AQWFTQHEHGGFPIERAALGSCDLSMLHIGGEWQWLVRQAGRDVAEGAARTAVDAQRAAEAVALELCCSKLRLSERGRIEAV
Ga0318546_109450051	3300031771	Soil	MTTASWFTHLERGGFQIERAALRSCELSVLYVGGEWQWLVRQDGRDVAEGAASSADDARREAEDVALKLLER
Ga0318557_100256415	3300031795	Soil	FSHQQAGGVPIEKAAIGSCDLSVLHVGGEWQWLVRQAGRDVAEGAARDLADAKRAAESAARLWISG
Ga0318550_101096043	3300031797	Soil	MTQWFSHQQGGVPIEKAAISSCDLSVLHVGGEWQWLVRQAGRDVAEGAARDLADAKRAAESAARLWISG
Ga0318568_102975564	3300031819	Soil	FKSCPLGAFCYNWSMTTASWFTHLERGGFQIERAALRSCELSVLYVGGEWQWLVRQAGRDVAEGAARTFVDAQQQAEVVALELGCASVESAA
Ga0318499_103025051	3300031832	Soil	RPHCRGILGPMIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0306919_101025205	3300031879	Soil	FPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0306919_111519111	3300031879	Soil	MIAQWFTQHEHGGFPLERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDA
Ga0318544_103186091	3300031880	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAETVALEFVG
Ga0306925_106360202	3300031890	Soil	MIAQWFTQHEHGGFPLERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALGLG
Ga0318536_106349612	3300031893	Soil	MIAQWFTQHEHGGFPLERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEVAALELG
Ga0306923_100815632	3300031910	Soil	MIAQWFTQHEHGGFPLERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELGLWPT
Ga0306923_115583192	3300031910	Soil	MMTTAQWFTLHEHGGFPTECAALGSCELSVLHVGGEWQWLVQQAGRDVAEGAARTADDARREAIAAAVALELD
Ga0306921_115040263	3300031912	Soil	MTRVYWFTQFEHGGFPIERAALGSCDLSMLHIDGEWQWLVRQAGRDVAEGAARTAVDAQRQAEAIAVELG
Ga0310916_106321123	3300031942	Soil	RAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELGLWPT
Ga0310913_101674902	3300031945	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELGLWPT
Ga0310913_105741762	3300031945	Soil	QGGFAVERAALGAFDLSLLHVGGEWQWLVRQDGRDVAEGAASSADDARREAEDVALKLLERGPNP
Ga0310910_103524201	3300031946	Soil	QWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELGLWPT
Ga0318530_101903441	3300031959	Soil	SHQQGGVPIEKAAIGSCDLSVLHVGGEWQWLVRQAGRDVAEGAARDLADAKRAAESAARLWISG
Ga0307479_106861572	3300031962	Hardwood Forest Soil	MTTAQWFTQHERGGFPIERAALGSCELSVLHVGGEWQWLVRQASRDVTEGAARTAVDARRGAEAVALELG
Ga0318569_102728813	3300032010	Soil	MTQWFSHQQGGVPIEKAAIGSCDLSVLHVGGEWQWLVRQAGRDVAEGAARDLADAKRAAESAARLWISG
Ga0318549_103265402	3300032041	Soil	TQHEHGGFPIERAALGSCDLSMLHIGGEWQWLVRQAGRDVAEGAARTAVDAQRAAEAVALELCCSKLRLSERGRIEAV
Ga0318570_100436062	3300032054	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAIDAQRAAETVALEFVG
Ga0318524_105028192	3300032067	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEAAALELG
Ga0318525_101541431	3300032089	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAEVAALE
Ga0318577_103001012	3300032091	Soil	MIAQWFTQHEHGGFPIERAVLGSCDLSMLHIGGEWQWLVRLDGRDVAEGAACTAVDAQRAAET
Ga0306920_1012198052	3300032261	Soil	DGKMQGVVEWEHMITAHWFTHREHGGFPIEKAALGSCDLSALHVGGEWQWLVRQAGRDVAEGAAPHLGDAQG
Ga0306920_1039538432	3300032261	Soil	MVSFCYNRPMTTACWFTHLERGGFPIERAALGSCDLSVLHVSGEWQWLVRQAGRDVAEGAARTFVDAQQQVGAVALELGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085226

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences