Metagenome / Metatranscriptome Family F085192

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085192
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	60 residues
Representative Sequence	MLPALDSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKL
Number of Associated Samples	90
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.38 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	85.59 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.090 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (29.730 % of family members)
Environment Ontology (ENVO)	Unclassified (29.730 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.847 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.09% β-sheet: 0.00% Coil/Unstructured: 40.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF12844	HTH_19	2.70
PF00860	Xan_ur_permease	2.70
PF07238	PilZ	1.80
PF00248	Aldo_ket_red	1.80
PF12543	DUF3738	1.80
PF07676	PD40	1.80
PF03486	HI0933_like	0.90
PF13365	Trypsin_2	0.90
PF01011	PQQ	0.90
PF01381	HTH_3	0.90
PF01904	DUF72	0.90
PF04909	Amidohydro_2	0.90
PF05936	T6SS_VasE	0.90
PF09723	Zn-ribbon_8	0.90
PF01799	Fer2_2	0.90
PF13683	rve_3	0.90
PF03928	HbpS-like	0.90
PF02371	Transposase_20	0.90
PF13620	CarboxypepD_reg	0.90
PF00805	Pentapeptide	0.90
PF11578	DUF3237	0.90
PF14437	MafB19-deam	0.90
PF13426	PAS_9	0.90
PF06094	GGACT	0.90
PF01436	NHL	0.90
PF11746	DUF3303	0.90
PF02611	CDH	0.90
PF00072	Response_reg	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0493	NADPH-dependent glutamate synthase beta chain or related oxidoreductase	Amino acid transport and metabolism [E]	1.80
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.80
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.90
COG3634	Alkyl hydroperoxide reductase subunit AhpF	Defense mechanisms [V]	0.90
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.90
COG3522	Predicted component of the type VI protein secretion system	Intracellular trafficking, secretion, and vesicular transport [U]	0.90
COG2509	FAD-dependent dehydrogenase	General function prediction only [R]	0.90
COG2134	CDP-diacylglycerol pyrophosphatase	Lipid transport and metabolism [I]	0.90
COG2081	Predicted flavoprotein YhiN	General function prediction only [R]	0.90
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.90
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.90
COG0029	Aspartate oxidase	Coenzyme transport and metabolism [H]	0.90
COG1249	Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase	Energy production and conversion [C]	0.90
COG1053	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	Energy production and conversion [C]	0.90
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.90
COG0492	Thioredoxin reductase	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0446	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase	Lipid transport and metabolism [I]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.09 %
Unclassified	root	N/A	9.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.09 %
Unclassified	root	N/A	9.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.09 %
Unclassified	root	N/A	9.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	49.55 %
Unclassified	root	N/A	9.91 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	37.84 %
Unclassified	root	N/A	9.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.84 %
Unclassified	root	N/A	9.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.84 %
Unclassified	root	N/A	9.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10089011	All Organisms → cellular organisms → Bacteria → Acidobacteria	1687	Open in IMG/M
3300001661\|JGI12053J15887_10216468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300001661\|JGI12053J15887_10441459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300001661\|JGI12053J15887_10615457	Not Available	516	Open in IMG/M
3300002245\|JGIcombinedJ26739_100651318	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300004152\|Ga0062386_101299086	Not Available	605	Open in IMG/M
3300005538\|Ga0070731_10003210	All Organisms → cellular organisms → Bacteria	14908	Open in IMG/M
3300006050\|Ga0075028_100004809	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5196	Open in IMG/M
3300006050\|Ga0075028_100142827	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300006050\|Ga0075028_100178725	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300006050\|Ga0075028_100901143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300006052\|Ga0075029_100808262	Not Available	638	Open in IMG/M
3300006102\|Ga0075015_100705202	Not Available	599	Open in IMG/M
3300007258\|Ga0099793_10067441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1610	Open in IMG/M
3300007265\|Ga0099794_10245046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300009029\|Ga0066793_10131391	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300009038\|Ga0099829_10873999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300009089\|Ga0099828_10613580	Not Available	979	Open in IMG/M
3300009143\|Ga0099792_10230557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1068	Open in IMG/M
3300009824\|Ga0116219_10828264	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300010159\|Ga0099796_10173013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300010379\|Ga0136449_101367813	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300011120\|Ga0150983_13574564	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300011270\|Ga0137391_11229704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300011271\|Ga0137393_10362386	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300012019\|Ga0120139_1203920	Not Available	525	Open in IMG/M
3300012189\|Ga0137388_10402411	All Organisms → cellular organisms → Bacteria → Acidobacteria	1267	Open in IMG/M
3300012200\|Ga0137382_10507649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300012202\|Ga0137363_10184706	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300012209\|Ga0137379_10393422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300012210\|Ga0137378_10046024	All Organisms → cellular organisms → Bacteria → Acidobacteria	3915	Open in IMG/M
3300012210\|Ga0137378_10207654	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300012351\|Ga0137386_11042304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300012357\|Ga0137384_10052292	All Organisms → cellular organisms → Bacteria → Acidobacteria	3381	Open in IMG/M
3300012357\|Ga0137384_10687910	All Organisms → cellular organisms → Bacteria → Acidobacteria	831	Open in IMG/M
3300012357\|Ga0137384_10865863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300012362\|Ga0137361_10248882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1619	Open in IMG/M
3300012363\|Ga0137390_11706922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300012685\|Ga0137397_10822829	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300012918\|Ga0137396_10429274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300012925\|Ga0137419_10986208	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	697	Open in IMG/M
3300012925\|Ga0137419_11983452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300012931\|Ga0153915_10557178	Not Available	1314	Open in IMG/M
3300014158\|Ga0181521_10195577	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300014501\|Ga0182024_10164926	All Organisms → cellular organisms → Bacteria	3087	Open in IMG/M
3300014501\|Ga0182024_10859735	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300015245\|Ga0137409_10158927	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300017822\|Ga0187802_10026635	Not Available	2028	Open in IMG/M
3300017925\|Ga0187856_1229437	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300017930\|Ga0187825_10163867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300017942\|Ga0187808_10268924	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300017995\|Ga0187816_10519157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300018057\|Ga0187858_10777993	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300020199\|Ga0179592_10098908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1340	Open in IMG/M
3300020580\|Ga0210403_10913386	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300020581\|Ga0210399_10095464	All Organisms → cellular organisms → Bacteria	2427	Open in IMG/M
3300020581\|Ga0210399_10740347	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300021088\|Ga0210404_10574541	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300021171\|Ga0210405_10491419	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300021420\|Ga0210394_10065036	All Organisms → cellular organisms → Bacteria	3164	Open in IMG/M
3300021420\|Ga0210394_10079684	All Organisms → cellular organisms → Bacteria	2831	Open in IMG/M
3300021433\|Ga0210391_10905471	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300021477\|Ga0210398_11346442	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300021478\|Ga0210402_10554923	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300021559\|Ga0210409_10019653	All Organisms → cellular organisms → Bacteria → Acidobacteria	6586	Open in IMG/M
3300021559\|Ga0210409_10242428	All Organisms → cellular organisms → Bacteria → Acidobacteria	1633	Open in IMG/M
3300026297\|Ga0209237_1284212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300026361\|Ga0257176_1023501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300026482\|Ga0257172_1053659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300026499\|Ga0257181_1042293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300026514\|Ga0257168_1102467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300026515\|Ga0257158_1024140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1039	Open in IMG/M
3300026555\|Ga0179593_1057496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1948	Open in IMG/M
3300026555\|Ga0179593_1138721	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300026557\|Ga0179587_10091978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1822	Open in IMG/M
3300026557\|Ga0179587_10974887	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300027383\|Ga0209213_1013340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1508	Open in IMG/M
3300027388\|Ga0208995_1055087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300027432\|Ga0209421_1119226	Not Available	543	Open in IMG/M
3300027546\|Ga0208984_1058060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300027616\|Ga0209106_1120635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300027629\|Ga0209422_1083530	Not Available	746	Open in IMG/M
3300027633\|Ga0208988_1001865	All Organisms → cellular organisms → Bacteria → Acidobacteria	4613	Open in IMG/M
3300027667\|Ga0209009_1148811	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300027669\|Ga0208981_1000595	All Organisms → cellular organisms → Bacteria	7250	Open in IMG/M
3300027674\|Ga0209118_1007010	All Organisms → cellular organisms → Bacteria → Acidobacteria	4096	Open in IMG/M
3300027674\|Ga0209118_1102872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300027738\|Ga0208989_10176653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300027846\|Ga0209180_10649242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300027846\|Ga0209180_10689893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300027854\|Ga0209517_10534991	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300027869\|Ga0209579_10216707	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300027884\|Ga0209275_10591608	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300027894\|Ga0209068_10087905	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300027910\|Ga0209583_10499306	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027915\|Ga0209069_10119415	All Organisms → cellular organisms → Bacteria → Acidobacteria	1287	Open in IMG/M
3300028023\|Ga0265357_1012751	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300028047\|Ga0209526_10508659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300028536\|Ga0137415_10472324	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300028800\|Ga0265338_10213158	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300028906\|Ga0308309_10173224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1756	Open in IMG/M
3300030991\|Ga0073994_10002673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300030991\|Ga0073994_12365031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300031090\|Ga0265760_10007898	All Organisms → cellular organisms → Bacteria	3039	Open in IMG/M
3300031090\|Ga0265760_10323013	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300031474\|Ga0170818_115025851	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300031708\|Ga0310686_113708362	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300031708\|Ga0310686_118035576	All Organisms → cellular organisms → Bacteria	3139	Open in IMG/M
3300031823\|Ga0307478_11644657	Not Available	530	Open in IMG/M
3300031962\|Ga0307479_10198403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1976	Open in IMG/M
3300032180\|Ga0307471_100478368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1390	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.20%
Host-Associated	Host-Associated	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.98%
Aquatic	Environmental → Aquatic	16.22%
Plants	Host-Associated → Plants	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.98%
Freshwater	Environmental → Aquatic → Freshwater	8.11%
Sediment	Environmental → Aquatic → Sediment	8.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.36%
Loam	Environmental → Terrestrial → Soil → Loam	18.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.11%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.11%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	29.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.12%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.11%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.60%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.90%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100890115	3300001661	Forest Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISE
JGI12053J15887_102164681	3300001661	Forest Soil	MLPALNSQKIRLQELTSQRKPLAAQFESNPSDTHLALELKIIDDQISECNQQ
JGI12053J15887_104414592	3300001661	Forest Soil	MLPAQDSQKIRLQELTRQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
JGI12053J15887_106154571	3300001661	Forest Soil	GPTLMLPALNSQKIRLQELTSQRKPLAARFESNPSDTHLALELKIIDDQISECNQQIHRDRRKLK*
JGIcombinedJ26739_1006513183	3300002245	Forest Soil	MLPALDSQKIKLQELTSQRAPLSARFKSNPEDIQLALELKRIDDQIAECTRQIQGYRRKPQ*
Ga0062386_1012990861	3300004152	Bog Forest Soil	MLTAPSSHEIKLRELRGRRKPLSERFEKNPSDTRLALELKLIDDQIADCHQGIQGNRRKQK*
Ga0070731_100032102	3300005538	Surface Soil	MFAARSSQEMRLKELKGKRVPLSKQFEKHPDDTHLAVEIKVIDDQIAECSREIQGDRRKQK*
Ga0075028_1000048096	3300006050	Watersheds	MLPVLDSQKIRLQELNSQRRPLSGRFKNNPEHTHLALELKIIDDQIAKCRQEIQNRRRKQK*
Ga0075028_1001428273	3300006050	Watersheds	MVSATGPRETRLQELRLAREPLSKQFDKNPNDTRLALQLKSIDDKISECTREIQGDRRKQK*
Ga0075028_1001787253	3300006050	Watersheds	MLPVLDSQKIRLQELNSQRRPLSERFKNNPGDTYLALELKVIDDQIAECNLQIQNQRRKQK*
Ga0075028_1009011432	3300006050	Watersheds	MLPTPDSKKIKLHELIGKRKPLWKRFEDNPNDTHLALELKIIDDQIAECNHQIEGEKRKLK*
Ga0075029_1008082622	3300006052	Watersheds	LPIPDANKIKMQELLGRRKPLWQRFESNPNDIELALEVKLIDDQIAECNAQIQAEKRKPLR*
Ga0075015_1007052021	3300006102	Watersheds	MLPVLDSQKIRLQELNSQRRPLSERFKNNPEDTYLALELKVIDDQIAECNLQIQIQRRKQK*
Ga0099793_100674414	3300007258	Vadose Zone Soil	MLPALDSQKIRLQELISQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0099794_102450461	3300007265	Vadose Zone Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0066793_101313911	3300009029	Prmafrost Soil	MLPAPSSQEIRLRELRGKRKPLSERFENNPDDTHLALELKIIDDQIAECTQEIQGDRRKQK*
Ga0099829_108739991	3300009038	Vadose Zone Soil	MLPASDSKKTRLEELTGRRKVLSERFENNPNDTHLALEIKIIDDQIAEFIQQIQADRRKRK*
Ga0099828_106135802	3300009089	Vadose Zone Soil	MLPVPDSQEIRLQELIGKRKPVWERFEKNPTDTHLALELKVIDDQIAECNQQIRGDRRKQK*
Ga0099792_102305572	3300009143	Vadose Zone Soil	MLPALDSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0116219_108282641	3300009824	Peatlands Soil	PARSFQEIRLQELKGKRMPLSKQFENHPDDTHLALELKIIDDQIAECSREIQGDRRKQK*
Ga0099796_101730132	3300010159	Vadose Zone Soil	MLPAPDYQKVRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0136449_1013678132	3300010379	Peatlands Soil	MLPARSFQEIRLQELKGKRMPLSKQFENHPDDTHLALELKIIDDQIAECSREIQGDRRKQK*
Ga0150983_135745642	3300011120	Forest Soil	PMLAALDSQKIRLQELTTQRKPLSARFNSNPMDTHLALELKIIDDQIAECNQQIQGQRRKRK*
Ga0137391_112297041	3300011270	Vadose Zone Soil	KLMLSVLDSQKIRIQELTNQREPLSARFKSNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0137393_103623863	3300011271	Vadose Zone Soil	MLPAPNSQEIRLQELRDKRKPLSERFENNPNDTHLALELKIIDDQIAECNQQIRGDRRSRSD*
Ga0120139_12039201	3300012019	Permafrost	QEKRLQELKGKRKPLSERFEKNPNDTHLALELKIIDDGIAECNQEIQRDRRKQQ*
Ga0137388_104024113	3300012189	Vadose Zone Soil	TRLEELTGRRKVLSERFENNPNDTHLALEIKIIDDQIAEFIQQIQADRRKRK*
Ga0137382_105076492	3300012200	Vadose Zone Soil	MLPAPDSQEIRLQELIAKREPLWQQFKNNPTDTHLALQLKIIDDQISDCNQQIRRDRKKLK*
Ga0137363_101847063	3300012202	Vadose Zone Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQI
Ga0137379_103934222	3300012209	Vadose Zone Soil	MLPAPDYQKLRLQELTSQRKPLAARFESNPKDTHLALELKVIDDQISECNQQIHRDRRKLK*
Ga0137378_100460246	3300012210	Vadose Zone Soil	MLPAPDYQKLRLQELTSQRKPLAARFESNPKDTHLALELKVIDDQISECNQHIHRDRTKLK*
Ga0137378_102076543	3300012210	Vadose Zone Soil	MLRAPDSQEIRLQELIGKRKPVWQRFENNPNDTHLALELKVIDDQISECNLQIHRDRTKLK*
Ga0137386_110423041	3300012351	Vadose Zone Soil	MLPASDSQEIRLQELIGKRRPMWQRFKNNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0137384_100522925	3300012357	Vadose Zone Soil	MLLAIDSQKLRVQELTRQRKPLSERFKSNPEDTRLALELKVIDDQIAECNKQIQAHMKQQK*
Ga0137384_106879103	3300012357	Vadose Zone Soil	MLPAPDYQKVRLQELTSQRKPLAARFESNPKDTHLALKLKVIDDQISECNQQIHRDRTKLK*
Ga0137384_108658631	3300012357	Vadose Zone Soil	MLPAPDSQEIRLQELIGKRKPVWQRFENNPNDTHLALELKVIDDQISECNLQIHRDRTKLK*
Ga0137361_102488822	3300012362	Vadose Zone Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRR
Ga0137390_117069221	3300012363	Vadose Zone Soil	MLPAPNSQEIRLQELRDKRKPLSERFENNPNDTHLALELKIIDDQIAECNQQIRGDRRKQK*
Ga0137397_108228292	3300012685	Vadose Zone Soil	MLPALNSQKIRLQELTSQRKPLATRFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0137396_104292742	3300012918	Vadose Zone Soil	MLPALDSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIQRDKRKLK*
Ga0137419_109862081	3300012925	Vadose Zone Soil	MLPAQDSQKIRLQELTRQRKPLAAQFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK*
Ga0137419_119834521	3300012925	Vadose Zone Soil	MLPAQDSQKIRLQELTSQRKPLATRFESNPNDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0153915_105571781	3300012931	Freshwater Wetlands	MVAVPDSQKIRLQGLRGKRKHLWAKFEDNPNETRLALELKIIDDQIAEYSQQIQQCNKVLAQSR*
Ga0181521_101955774	3300014158	Bog	MLSARSSQEIRLQELKGKRMPLSKQFENHPNDTHLALELKIIDDQIAECSREIQGDRRKQK*
Ga0182024_101649262	3300014501	Permafrost	MLLARSSQEIRLQELKGKRKPLSKQFENHPGDTHLALELKIIDDQIAECSREIQGDRRKQK*
Ga0182024_108597352	3300014501	Permafrost	MLPAPSSQEMRLQELRGKRKPLSELFENNPNDTHLALELKIIDDQIAECNQQIQGHRRKQK*
Ga0137409_101589271	3300015245	Vadose Zone Soil	MLPALNSQKIRLQELTSQRKPLATRFESNPNDTHLALELKIIDDQISEC
Ga0187802_100266351	3300017822	Freshwater Sediment	MLPTPDSKKIKLHELIGKRKPLWRRFEDNPNDTHLALELKIIDDQIAECNRQIEGEKRKL
Ga0187856_12294371	3300017925	Peatland	MLPAPNFLKISLQELTGKRKPLWERFENNPSETHLALELKIIDDQIAECNQQIQGDRRKQ
Ga0187825_101638671	3300017930	Freshwater Sediment	MLPTPDSKKIKLHELIGKRKPLWKRFEDNPSDTHLALELKIIDDQIAECNHEIEDEKRKL
Ga0187808_102689241	3300017942	Freshwater Sediment	PTSYLNSLGPFGGLMLPTPDSKKIKLHELIGKRKPLWRRFEDNPNDTHLALELKIIDDQIAECNRQIEGEKRKLK
Ga0187816_105191571	3300017995	Freshwater Sediment	PPTSYLSSLRPFEGLMLPTPDSKKIKLHELIGKRKPLWRRFEDNPNDTHLALELKIIDDQIAECNRQIEGEKRKLK
Ga0187858_107779932	3300018057	Peatland	PKLMLPAPNFLKISLQELTGKRKPLWERFENNPSETHLALELKIIDDQIAECNQQIQGDRRKQK
Ga0179592_100989083	3300020199	Vadose Zone Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPSDTHLALELKIIDDQISECNQQIHRDKRKL
Ga0210403_109133861	3300020580	Soil	SQKIKLQELTSQRAPLSARFKSNPEDIQLALELKRIDDQIAECTRQIQGYRRKPQ
Ga0210399_100954641	3300020581	Soil	MLAALDSQKIRLQELTSQRKPLSARFNSNPKDTHLALELKIIDDQIAECNQQIQGQRRKR
Ga0210399_107403471	3300020581	Soil	KCPVEWLNAPILAGGPKSMLLALDSHKIRIQELTRQRKPLAEQFKSNPMDTHLALELKIIDDQIAECNQQIQAHRRK
Ga0210404_105745412	3300021088	Soil	MLPAPNSQEIRLQELRDKRKPLSERFENNPNDTHLALELKIIDDQIAECNQQIQGQRRKR
Ga0210405_104914193	3300021171	Soil	MLLALDSQKIRIQELTSQRKPLLKRFRSNPKDTHLALEIKIIDDQIAECKQQIQDRRRKL
Ga0210394_100650363	3300021420	Soil	MLPTPDPNGLRLDELKSKRKPLSERFENNPSDTHLALELKSIDDQIAQCSQQIQDKRRKQ
Ga0210394_100796843	3300021420	Soil	MLLALDSQKIRIQELTSQRKPLLERFRSNPKDTHLAVEIKIIDDQIAECKQQIQDRRRKL
Ga0210391_109054712	3300021433	Soil	MLLARSSQEIRLQELKGKRKPLSKQFENHPGDTHLALELKIIDDQIAECSREIQGDRRKQ
Ga0210398_113464422	3300021477	Soil	QELNGKRKPLSKQFENHPGDTHLALELKIIDDQIAECSREIQGDRRKQK
Ga0210402_105549232	3300021478	Soil	MLAALDSQKIRLQELTSQRKPLSARFNSNPMDTHLALELKIIDDQIAECNQQIQGQRRKR
Ga0210409_100196535	3300021559	Soil	MLLALDSQKIRIQELTSQRKPLLERFRSNPKDTHLALEIKIIDDQIAECKQQIQDRRRKL
Ga0210409_102424281	3300021559	Soil	MLAALDSQKIRLQELTSQRKPLSARFNSNPMDTHLALELKIIDDQIAE
Ga0209237_12842121	3300026297	Grasslands Soil	MLPAPNSQEIRLQELRDKRKPLSERFENNPNDTHLALELKIIDDQIVECNQQIRGDRRSRSD
Ga0257176_10235011	3300026361	Soil	TSYWLRGPTLMLPAQDSQKIRLQELTRQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK
Ga0257172_10536591	3300026482	Soil	MLPALNSQKIRLQELTSQRKPLATRFESNPNDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0257181_10422931	3300026499	Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0257168_11024672	3300026514	Soil	MLSDLDSQKIRIEELTNQRNPLSARFKSNPKDTHLALELKIIDDQIAECNEQIQGRRRKQ
Ga0257158_10241402	3300026515	Soil	MLPAQDSQKIRLQELTRQRKPLAARFESNPNETHLALELKIIDDQISECNQQIHRDRRKL
Ga0179593_10574963	3300026555	Vadose Zone Soil	MLPAQDSQKIRLQELTRQRKPLAAQFESNPNDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0179593_11387212	3300026555	Vadose Zone Soil	MLLALDSQKIRLQELTRQRKPLSERFKSNPMDAHLALELKIIDDQIAECNEQIQDHRRKQ
Ga0179587_100919783	3300026557	Vadose Zone Soil	EGPKLMLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKLK
Ga0179587_109748872	3300026557	Vadose Zone Soil	PPYLLRGQKPMLLALDSQKIRLQELTRQRKPLSERFKSNPMDAHLALELKIIDDQIAECNEQIQDHRRKQA
Ga0209213_10133402	3300027383	Forest Soil	MLPALDSQKIRLQELTSKRKPLAAQFESNPSDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0208995_10550871	3300027388	Forest Soil	MLPAQDSQKIRLQELTRQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIQRDKRKL
Ga0209421_11192261	3300027432	Forest Soil	MLPGRSSQEIRLQELKGKRMPLSKQFENHPDDTHLAVELRIIDDQIAECSREIQGDRRK
Ga0208984_10580602	3300027546	Forest Soil	MLPALDSQKIRLQELTSQRKPLAARFESNPSDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0209106_11206352	3300027616	Forest Soil	MLPAQDSQKIRLQELTRQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0209422_10835301	3300027629	Forest Soil	MLSDLDSQKIRIQELTRQRKPLAEQFKSNPMDTHLALELKIIDDQIAECNRQIQGRRRKQ
Ga0208988_10018656	3300027633	Forest Soil	MLPALDSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDRRKL
Ga0209009_11488111	3300027667	Forest Soil	MLLALDSHKIRLQELTRQRKPLSEQFKSDPKDTHLALELKIIDDQIAECNQQIQAHRKK
Ga0208981_10005955	3300027669	Forest Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKIIDDQISECNQQIHRDKRKL
Ga0209118_10070101	3300027674	Forest Soil	MLLALDSQKIRLQELTSQRKPLSARFRSNPKDTHLALELKIIDDQIAECNQQIQDHRRRQ
Ga0209118_11028722	3300027674	Forest Soil	MLSDLDSQKIRIQELTNQRNPLSARFKSNPNDTHLALELKIIDDQIAECNQQIQGRRRKQ
Ga0208989_101766532	3300027738	Forest Soil	MLPALDSQKIRLQELTSQRKPLAARFESNPSDTHLALELKIIDDQISECNQQIHRDKRKL
Ga0209180_106492421	3300027846	Vadose Zone Soil	MLPASDSKKTRLEELTGRRKVLSERFENNPNDTHLALEIKIIDDQIAEFIQQIQADRRKR
Ga0209180_106898931	3300027846	Vadose Zone Soil	MLPAPNSQEIRLQELRDKRKPLSERFENNPNDTHLALELKIIDDQIAECNQQIRGDRRSRSD
Ga0209517_105349911	3300027854	Peatlands Soil	MLPARSFQEIRLQELKGKRMPLSKQFENHPDDTHLALELKIIDDQIAECSREIQGDRRKQ
Ga0209579_102167072	3300027869	Surface Soil	MFAARSSQEMRLKELKGKRVPLSKQFEKHPDDTHLAVEIKVIDDQIAECSREIQGDRRKQ
Ga0209275_105916082	3300027884	Soil	MLPALDSQKIKLQELTSQRAPLSARFKSNPEDIQLALELKRIDDQIAECTRQIQGYRRKP
Ga0209068_100879052	3300027894	Watersheds	MLPVLDSQKIRLQELNSQRRPLSERFKNNPGDTYLALELKVIDDQIAECNLQIQNQRRKQ
Ga0209583_104993062	3300027910	Watersheds	PMLLALDSHKIRLQELTRQRKPLSEQFKSNPKDTHLALELKIIDDQIAECNQQIQAHRRK
Ga0209069_101194152	3300027915	Watersheds	MLPALDSQKIRLQELMSQRKPLSARFNSNPNDTHLALELKIIDDQIAECNQQIQGQRRKR
Ga0265357_10127511	3300028023	Rhizosphere	YLLGGPKSMLLALDSHKIRIQELTRQRKPLAEQFKSNPMDTHLALELKIIDDQIAECNQQIQAHRRK
Ga0209526_105086592	3300028047	Forest Soil	MLPAQEFQQVRLQELIGKRKPVWQRFEDNPNDTHLALELKIIDDQISECNQQIHRDGRKL
Ga0137415_104723243	3300028536	Vadose Zone Soil	MLPAPNSQEIRLQELRDKRKPLSERFENNPNDTHLALELKIIDDQIAECNQQIRGDRRKQ
Ga0265338_102131582	3300028800	Rhizosphere	MTMLSPSTSHEIKLRELRGKRKPLSERFDKNPSDTRLALELKLIDDQIAECHQGIQGTRRKQK
Ga0308309_101732243	3300028906	Soil	MLPVLDSQKIKLQELTSQRAPLSARFKSNPEDIQLALELKRIDDQIAECTRQIQGYRRKP
Ga0073994_100026732	3300030991	Soil	MLPALNSQKIRLQELTSQRKPLAARFESNPNDTHLALELKMIDDQISECNQQIHRDRRKL
Ga0073994_123650312	3300030991	Soil	SQKIRLQELTSQRKPLAARFESNPSDTHLALELKIIDDQISECNQQIHRDRRKLK
Ga0265760_100078982	3300031090	Soil	MSLARSSQEIRLQELKGKRKPLSKQFENHPGDTHLALELKIIDDQIAECSREIEGDRRKQ
Ga0265760_103230131	3300031090	Soil	DSHKIRIQELTRQRKPLAEQFKSNPMDTHLALELKIIDDQIAECNQQIQAHRRK
Ga0170818_1150258512	3300031474	Forest Soil	LPVTADSQRIRLKELRGQRKPLSERFENNPSDTYLALELKIIDDQIEECNHRLQDDRKQ
Ga0310686_1137083622	3300031708	Soil	MLPVPDFQKIRLKELNRQRKPLSDQFKNNPEDTHLALELKIIDDQIAECNQQIQEHRRKH
Ga0310686_1180355762	3300031708	Soil	MLLARSSQEIRLQELKGKRKPLSKQFENHPGDTHLALELKIIDDQIAECSREIEGDRRKQ
Ga0307478_116446571	3300031823	Hardwood Forest Soil	MLPATDFQKIRLQELTRQRKPLSERFKSNPKDTHLALELKVIDDQIAECNQQIQAQRRKH
Ga0307479_101984032	3300031962	Hardwood Forest Soil	MLLALDSQKIKLQELTRQRKPLSERFKSNPKDTHLALELKIIDDQIAECNEQIQDHRRKQ
Ga0307471_1004783682	3300032180	Hardwood Forest Soil	MLRALDSQKVRLQELTSQRKPLAARFESNPKDTHLALELKIIDDQISECNQQIHRDRKKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085192

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences