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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F085128 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 111 |
| Average Sequence Length | 45 residues |
| Representative Sequence | MRKAALLYNPDSGGSKLRQRELESALAVLRDGGVEAELVPTE |
| Number of Associated Samples | 99 |
| Number of Associated Scaffolds | 111 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 2.70 % |
| % of genes from short scaffolds (< 2000 bps) | 2.70 % |
| Associated GOLD sequencing projects | 93 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.64 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (97.297 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.910 % of family members) |
| Environment Ontology (ENVO) | Unclassified (26.126 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (58.559 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 27.14% β-sheet: 20.00% Coil/Unstructured: 52.86% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.64 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 111 Family Scaffolds |
|---|---|---|
| PF05163 | DinB | 40.54 |
| PF01653 | DNA_ligase_aden | 12.61 |
| PF13414 | TPR_11 | 4.50 |
| PF12867 | DinB_2 | 4.50 |
| PF16396 | DUF5005 | 1.80 |
| PF13181 | TPR_8 | 1.80 |
| PF03120 | DNA_ligase_OB | 1.80 |
| PF00593 | TonB_dep_Rec | 0.90 |
| PF13426 | PAS_9 | 0.90 |
| PF01435 | Peptidase_M48 | 0.90 |
| PF16694 | Cytochrome_P460 | 0.90 |
| PF13302 | Acetyltransf_3 | 0.90 |
| PF13561 | adh_short_C2 | 0.90 |
| PF04307 | YdjM | 0.90 |
| PF07992 | Pyr_redox_2 | 0.90 |
| PF13551 | HTH_29 | 0.90 |
| PF00781 | DAGK_cat | 0.90 |
| PF14520 | HHH_5 | 0.90 |
| COG ID | Name | Functional Category | % Frequency in 111 Family Scaffolds |
|---|---|---|---|
| COG2318 | Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB) | Secondary metabolites biosynthesis, transport and catabolism [Q] | 40.54 |
| COG0272 | NAD-dependent DNA ligase | Replication, recombination and repair [L] | 14.41 |
| COG1597 | Phosphatidylglycerol kinase, diacylglycerol kinase family | Lipid transport and metabolism [I] | 1.80 |
| COG1988 | Membrane-bound metal-dependent hydrolase YbcI, DUF457 family | General function prediction only [R] | 0.90 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 97.30 % |
| All Organisms | root | All Organisms | 2.70 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300006102|Ga0075015_100236835 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 984 | Open in IMG/M |
| 3300010379|Ga0136449_101271014 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1151 | Open in IMG/M |
| 3300031946|Ga0310910_10396299 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1094 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 9.91% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 7.21% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 6.31% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 6.31% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 5.41% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 4.50% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 4.50% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.50% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 4.50% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 4.50% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.50% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 3.60% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.60% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 2.70% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 2.70% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.70% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 2.70% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 2.70% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 2.70% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.80% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 1.80% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 1.80% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 1.80% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.90% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.90% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.90% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.90% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.90% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.90% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.90% |
| Biofilm | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm | 0.90% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300001867 | Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705) | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005454 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 | Environmental | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005542 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 | Environmental | Open in IMG/M |
| 3300005555 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 | Environmental | Open in IMG/M |
| 3300005557 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 | Environmental | Open in IMG/M |
| 3300005575 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006086 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 | Environmental | Open in IMG/M |
| 3300006102 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300007982 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
| 3300009522 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG | Environmental | Open in IMG/M |
| 3300009624 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 | Environmental | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
| 3300015054 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300017924 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5 | Environmental | Open in IMG/M |
| 3300017935 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 | Environmental | Open in IMG/M |
| 3300017937 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017988 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG | Environmental | Open in IMG/M |
| 3300017995 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1 | Environmental | Open in IMG/M |
| 3300018019 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150 | Environmental | Open in IMG/M |
| 3300018022 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40 | Environmental | Open in IMG/M |
| 3300018044 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018088 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG | Environmental | Open in IMG/M |
| 3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300019786 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction) | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021476 | Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022717 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025134 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025619 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300026319 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026335 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes) | Environmental | Open in IMG/M |
| 3300027521 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027590 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027829 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027854 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027894 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300028023 | Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 | Host-Associated | Open in IMG/M |
| 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Host-Associated | Open in IMG/M |
| 3300028806 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1 | Environmental | Open in IMG/M |
| 3300028882 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3 | Environmental | Open in IMG/M |
| 3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300029939 | I_Bog_E3 coassembly | Environmental | Open in IMG/M |
| 3300030013 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3 | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030760 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030879 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030991 | Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Host-Associated | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
| 3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300033887 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1 | Environmental | Open in IMG/M |
| 3300034163 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 | Environmental | Open in IMG/M |
| 3300034282 | Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12635J15846_102969832 | 3300001593 | Forest Soil | MRKAALLYNPESGGSKQRQRELESALTLLRSGGIEADLIPTQS |
| C688J18823_105562301 | 3300001686 | Soil | MQKAALLYNPESGGSKQRQKELQSALEILRGAGVETELF |
| JGI12627J18819_102554651 | 3300001867 | Forest Soil | MRKAALLYNPDSGGSKQRQQELESALTVLRNGDVEADLVPTESP |
| Ga0062385_100048554 | 3300004080 | Bog Forest Soil | MRKAALLYNPDSGGSKRRQRELESALGVLVSAGVEAELVPTESRH |
| Ga0062389_1014210542 | 3300004092 | Bog Forest Soil | MRKAALLYNPDSGGRKQRQRELEAALAVLRSGGVEADLHPT |
| Ga0062389_1046668042 | 3300004092 | Bog Forest Soil | MRKAALLYNPESGGSRARRHAELASVLTLLRGANVEAQLILT |
| Ga0062388_1018057472 | 3300004635 | Bog Forest Soil | MRKAALLYNPDSGGSKLRQRELESALAVLRDGGVEAELVPTE |
| Ga0066687_107762851 | 3300005454 | Soil | MVQTCGQVQSSAGMRKAALLYNPDSGGSKKRQRQLQAAVEILRAGRVEAELFATTSKEHAGEEARKAIAS |
| Ga0070707_1005845431 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MRKAALLYNPESGGSKQRQRELESALAVLRNGAVEADLVPT |
| Ga0073909_101977592 | 3300005526 | Surface Soil | MRKAALLYNPDSGGSKQRQRELQSALEILKNGGIEAK |
| Ga0070731_101394271 | 3300005538 | Surface Soil | MRKAALLYNPDSGGSRKRRRELESALEILRSGGVEANLFPTDSREHAGDEARRAMSAGCD |
| Ga0070733_110090432 | 3300005541 | Surface Soil | MRKAALLYNPDSGGSKQRQRELQSALSILKDGGVEAE |
| Ga0070732_103082942 | 3300005542 | Surface Soil | MRKAALLYNPESGGSKRRQRELQAAVEILRAGGVEADLLATD |
| Ga0066692_104944201 | 3300005555 | Soil | MRKAALLYNPVSGGSRTPRHAELESALALLQRTGVQAEL |
| Ga0066704_100518593 | 3300005557 | Soil | MRKAALLYNPVSGGSRTPRHAELESALALLQRTGV |
| Ga0066702_105124032 | 3300005575 | Soil | MRKAALLYNPESGGSKQRQQELASALAVLRNGSVEAELVP |
| Ga0070763_102912381 | 3300005610 | Soil | MRKAALLYNPDSGGSKQRQRDLQSALEVLRRGGVDAELVPTNSPEHAEEEA |
| Ga0070764_101265371 | 3300005712 | Soil | MRKAALLYNPDSGGSRVRRQTELDSVLALLRSANVEAELV |
| Ga0066903_1003530651 | 3300005764 | Tropical Forest Soil | MRKAALLYNPDSGGSKQRQKELQAALEILQGAGVDAELFAAGSREEAAQLARGAISAGS |
| Ga0075017_1003074221 | 3300006059 | Watersheds | MRKAALLYNPDSGGKVARRQRELQSSLEVLRNGGVEA |
| Ga0075019_108338411 | 3300006086 | Watersheds | MHKAALLYNPASGGGRRRQKDLQAALTLLRQGGVEAELILTQSSSD |
| Ga0075015_1002368353 | 3300006102 | Watersheds | MRKAALLYNPDSGGSGRRRQRELESALAVLRSGGVE |
| Ga0075030_1000929213 | 3300006162 | Watersheds | MRKVALLYNPDSGGSGKRRFRKLESALAVLREAGVDANLVPTESRD |
| Ga0075030_1016219211 | 3300006162 | Watersheds | MRKAALLYNPDSGGSQQRQRELESALAVLRAGGVEADLVPTKSRDHAG |
| Ga0102924_10055191 | 3300007982 | Iron-Sulfur Acid Spring | MRKAALLYNPDSGVSKQRQRELRSAVGILRAGGVEAELFPTDSPDHAG |
| Ga0102924_12368242 | 3300007982 | Iron-Sulfur Acid Spring | MRKAALLYNPDSGGSKQRPRELESALAVLRAASVEAD |
| Ga0099792_100974041 | 3300009143 | Vadose Zone Soil | MRKAVLLYNPDSGGSRKRRQTELESVVAMLRTAGVDASL |
| Ga0116214_12306091 | 3300009520 | Peatlands Soil | MRKAALLYNPDSGGSQQRQRELESALAVLRAGGVEADL |
| Ga0116214_13264332 | 3300009520 | Peatlands Soil | MRKAALLYNPDSGGSKQRQRELESALAVLRSGGIEADLVPTQSPGHAGEETRQ |
| Ga0116218_10296111 | 3300009522 | Peatlands Soil | MRKAALLYNPDSGGSQRRQKELESALTILRAGGVEADLVPT* |
| Ga0116105_11077191 | 3300009624 | Peatland | LTISFDDVMRKAALLYNPDSGGSKRRQRELESALAVLRDGGVEAELVPTESKY |
| Ga0126380_101967263 | 3300010043 | Tropical Forest Soil | MRKAALLYNPDSGGSKQRKQELESALSILRNGGVEAELVPT |
| Ga0126380_108997851 | 3300010043 | Tropical Forest Soil | MRKAALLYNPESGNSHQRRRELQFALDILKNGGVEAELHASNSRA |
| Ga0126380_117048142 | 3300010043 | Tropical Forest Soil | MRKAALLYNPESGGSRQRQRELEAALAILNNGGIEAEMFPTDSREHAGDEARRAIALG |
| Ga0126373_104923231 | 3300010048 | Tropical Forest Soil | MRKAALLYNPDSGSSKKRLREIKSALAVLRGAGVEADLIPTQSRAQGGEEARRAIQSGCD |
| Ga0126378_126025742 | 3300010361 | Tropical Forest Soil | MRKAALLYNPESGGSKQRKRDLDRALAILQDGGVAAELLP |
| Ga0126379_104292121 | 3300010366 | Tropical Forest Soil | MRKAALLYNPDSGGSRRRQRELQSSLEILRGGGVETELFPTKSPGHAQ |
| Ga0136449_1003305083 | 3300010379 | Peatlands Soil | MRKAALLYNPDSGGSQQRHKELESALAVLRTGGVEADLVPTQSRNHAGDETRMAIDSGCD |
| Ga0136449_1012710141 | 3300010379 | Peatlands Soil | MRKAALLYNPDSGGRGQRRQDELESALAILRGAGVEADLV |
| Ga0137404_118080971 | 3300012929 | Vadose Zone Soil | MHMRKAALLYNPASGGRGLRRQNELESAVAFLRGAGVEADLVPTESLDHAGDETRRAI |
| Ga0181531_107410312 | 3300014169 | Bog | MRKAALLYNPDSGGSGKRRRELQSALEILKGAGVEA |
| Ga0181526_107761472 | 3300014200 | Bog | MRKAALLYNPDSGGSQQRRRELESALAVLRAGGVEADLVPTESRNH |
| Ga0137420_14446073 | 3300015054 | Vadose Zone Soil | MRKAAMLYNPDSGGSSERRKKELESAVALLQAGGVDAELIPTESRDHAEDE |
| Ga0187820_10231243 | 3300017924 | Freshwater Sediment | MRKAVLLYNPDSGGSKQRQRELQAALAILKDGGIEAELLPTESRDHAGDEARRAVA |
| Ga0187848_102259001 | 3300017935 | Peatland | MRKAALLYNPDSGGSRKQRKSKLDSVLAVLRDSGVEANL |
| Ga0187809_103286681 | 3300017937 | Freshwater Sediment | MRQVALLYNPDSGRKGNRRLRALEAALAVLRKAGVTAELVPTHSPEDAGEKAGQAIRSGCDT |
| Ga0187817_109496042 | 3300017955 | Freshwater Sediment | MRKAALLYNPDSGGSRKRQRELESVLVALRNAGVE |
| Ga0187817_110014862 | 3300017955 | Freshwater Sediment | MRKAALLYNPDSGGSRKRRRELESALEILRGGGIEANLFATDSPEHAGDEARRAMA |
| Ga0187783_113972412 | 3300017970 | Tropical Peatland | MRKAALVYNPDSGGSRGRRLEDLQAALSLLRSAGVEAN |
| Ga0187781_106147412 | 3300017972 | Tropical Peatland | MRKAALLYNPESGGSRQRQRELEAALAILKNGGIAAELFPTDSREHAGDEARRAIAAGCD |
| Ga0181520_106939842 | 3300017988 | Bog | MRKAALLYNPDSGGSRWRQRELQSALALFKASGIEAEMLLADS |
| Ga0187816_100282081 | 3300017995 | Freshwater Sediment | MRKAALLYNPDSGGSKQRLRELESALAVLSSAGVEAALV |
| Ga0187874_102938792 | 3300018019 | Peatland | MRKAALLYNPESGGSKQRQRELESALAVLRDGGVEAELVPTESKYHAG |
| Ga0187864_103042261 | 3300018022 | Peatland | MRKAALLYNPDSGGSRKRQRELESVLAALRNAGVEADLIAAETRRDG |
| Ga0187890_100385321 | 3300018044 | Peatland | MMRKAALLYNPDSGGRRLQRQADLESVLHLLRAAGVEAGLVL |
| Ga0187772_110332621 | 3300018085 | Tropical Peatland | MRKAALLYNPDSGGSRKRQRELESALGVLRSAGVEAALVL |
| Ga0187771_109477001 | 3300018088 | Tropical Peatland | MRKAALLYNPDSGGSQQRQRELQSALAVLRNAGVEADL |
| Ga0187770_117800192 | 3300018090 | Tropical Peatland | MRKAALLYNPDSGGSRKRQRELESALTILRNAGVEAELVAAETRKNGGEAARRA |
| Ga0182025_13553594 | 3300019786 | Permafrost | MRKAALLYNPDSGGSHKRRQAELDSALALLRNAGVEAT |
| Ga0182025_13847581 | 3300019786 | Permafrost | MAALLYTRNPGGSKQRQQELESALAALRTGGVDARL |
| Ga0210407_104990711 | 3300020579 | Soil | MRKAALLYNPDSGGSRRRRQQELEYALALLRGAGVEADLVPTESRDHAGDQTRLAVAS |
| Ga0210403_106502011 | 3300020580 | Soil | MRKAALLYNPESGGSKGRQRELQSAWEILKAGGVEAELFA |
| Ga0210403_112204131 | 3300020580 | Soil | MRKAAVLYNPESGASKQRQRELKSALTVLRSGGIEADLIP |
| Ga0210406_109693932 | 3300021168 | Soil | MRKAALLYNPDSGGSQQRQRELESALAVLRAGGVQADLIATQSPDHAG |
| Ga0210391_105911222 | 3300021433 | Soil | MRKAALLYNPDSGGSKRRQRELESALAVLKDGGVEAELVPTESKDHAGDEARLAVE |
| Ga0210392_114373171 | 3300021475 | Soil | MRKAALLYNPDSGGSGRRRLRELESALALLRDAGVEADLVPTDSRDHAGEET |
| Ga0187846_102412582 | 3300021476 | Biofilm | MRKAALLYNPDSGGSQQRQRELQSALDILRAGGVEAELYAADSRDQAATLIRQSIA |
| Ga0210410_108136791 | 3300021479 | Soil | MRKAALLYNPDSGGSEQRQRELESALAVLRGGGVEAEL |
| Ga0126371_123077511 | 3300021560 | Tropical Forest Soil | MRKAALLYNPDSGGSRQRQRDLESALVILQDGGVEASLIPTHSPEHAGEEARRAMAA |
| Ga0126371_134239052 | 3300021560 | Tropical Forest Soil | MRKAALLYNPDSGGSKQRQRELQPALEILKDGGVEAKLLA |
| Ga0242661_10129601 | 3300022717 | Soil | MRKAALLYNPESGGSKRRQRELQSALEILRAGEVEAELFASDSREQAGQLVRQAIA |
| Ga0207416_12464621 | 3300025134 | Iron-Sulfur Acid Spring | MRKAALLYNPDSGGSKQRQRELQAALAILRDGGVDAELFPTES |
| Ga0207926_11525902 | 3300025619 | Arctic Peat Soil | MRKAALLYNPDSGGSKQRQRELESALAILRAGAVDANLVPT |
| Ga0209647_13289051 | 3300026319 | Grasslands Soil | MRMRKAALLYNPASGGRGRRRQNELEAALAFLRGAGVEADLVPTDSQDHAGEETRRAIDSGC |
| Ga0209804_13203332 | 3300026335 | Soil | MRKAALLYNPESGGSKRRQRELQSAVEILRSGGVEADL |
| Ga0209524_10446501 | 3300027521 | Forest Soil | MRKAALLYNPDSGGSKQRQQELESALAVLRAGGVEADLIPTQSPYHAVAETQ |
| Ga0209116_10252291 | 3300027590 | Forest Soil | MRKAALLYNPDSGGSRKPRQSELESVLALLRHADVDAQLI |
| Ga0209116_10976252 | 3300027590 | Forest Soil | MRKAALLYNPDSGGSQQRQRELESALAVLRAGGVEADLVDTQS |
| Ga0209040_104610612 | 3300027824 | Bog Forest Soil | MRKAALLHNPDSGGSRLHQRELESVLVMLRRRGVEAEII |
| Ga0209773_102362222 | 3300027829 | Bog Forest Soil | MRKAALLYNPGSGGRGLRRLHELEAALAVIRGAGVKADLVPTDSQDHAG |
| Ga0209517_106417481 | 3300027854 | Peatlands Soil | MRKAALLYNPDSGGSQQRHKELESALAVLRTGGVEADLVPTQSRNH |
| Ga0209579_106706832 | 3300027869 | Surface Soil | MRKAALLYNPESGGSKQRQTELESALAVLRNAAVEADLVPT |
| Ga0209169_103257962 | 3300027879 | Soil | MRKAALLYNPDSGGSRVRPQAELESVLALLRGANVEA |
| Ga0209275_107225562 | 3300027884 | Soil | MRKAALLYNPDSGGSGKVRLAELNSALAVLRNAGVAADLIPTESRDHAGVATRQAIA |
| Ga0209068_106435171 | 3300027894 | Watersheds | MRKAALLYNPDSGGKVARRQRELQSSLEVLRNGGVEADLILA |
| Ga0209415_108306191 | 3300027905 | Peatlands Soil | MRKAALLYNPDSGGSQARQKELESALAVLRAGGVEADLVPTKSRDHAGDETRLAIDSGCDTI |
| Ga0209698_100305535 | 3300027911 | Watersheds | MRKVALLYNPDSGGSGKRRFRKLESALAVLREAGVDANLVPTESRDQA |
| Ga0265357_10427191 | 3300028023 | Rhizosphere | MRKAALLYNPDSGRRGLRRQAELESVLHLLRGAGVEAEL |
| Ga0265337_12032301 | 3300028556 | Rhizosphere | MRKAAVLYNPDSGGSGGKRQQELESALAVLRGAEVDADLVPTKSRDHAGDETRQA |
| Ga0302221_102366662 | 3300028806 | Palsa | MRKVALLYNPDSGGRRKRRQSELQTALGLFRGAGIEA |
| Ga0302154_101375151 | 3300028882 | Bog | MRKAALLYNPESGGSRVRRLAELESALALLRNANVEAQLILTDS |
| Ga0222749_107373272 | 3300029636 | Soil | MRKAALLYNPDSGGRGRRRLNDLEAALAVLRNAGVEAGLVPTESR |
| Ga0311328_103261113 | 3300029939 | Bog | MRKAALLYNPESGGSRVRRLAELESALALLRNANVEA |
| Ga0302178_104697541 | 3300030013 | Palsa | MRKVALLYNPDSGGRRKRRQSELQTALGLFRGAGIEAGLILTHSS |
| Ga0311354_113170392 | 3300030618 | Palsa | MRKAALLYNPDSGGSRRRWRELQSALGLLKDAGVEAEILLADSRERGGEETRRAVAFGCDTVFAC |
| Ga0265762_11473591 | 3300030760 | Soil | MMRKAALLYNPDSGGRRLRRQAELESVLQLLRGAGVEA |
| Ga0265765_10477722 | 3300030879 | Soil | MRKAALLYNPDSGGRRARRKAELESALALLRNANVEAQLVLTD |
| Ga0073994_124080192 | 3300030991 | Soil | MRKAALLYNPDSGGSKQRQQELESALAVLRAGGVEADLIPTLSPYHA |
| Ga0265340_102659152 | 3300031247 | Rhizosphere | MRKAALLYNPDSGGSKQRQSDLESALAVLRNGGVDAALVPTQSPEHALEET |
| Ga0307476_101933052 | 3300031715 | Hardwood Forest Soil | MRKAALLYNPDSGGSRKRRRELESALEILRIGGIEANLFATDSREHAGDEARRAMA |
| Ga0307469_111246991 | 3300031720 | Hardwood Forest Soil | MRKAALLYNPDSGGSKQRQRELQSALAILRDGGTEAELLP |
| Ga0307477_111697381 | 3300031753 | Hardwood Forest Soil | MRKAALLYNPDSGGSKQRQRELESALAVLRAGGVEAELIPTQSPYHAVAETQSAIA |
| Ga0307475_106014961 | 3300031754 | Hardwood Forest Soil | MRKAALLYNPESGGSKRRQRELQSALETLKAGGVEAELFASDSREQ |
| Ga0310910_103962993 | 3300031946 | Soil | MRKAALLYNPESGGSQQRQRELQSALDILKNEGVEAELHASNSRAEAR |
| Ga0307470_103622971 | 3300032174 | Hardwood Forest Soil | MRKAALLYNPGSGSSGGRRSELESALALLRGANVDAE |
| Ga0335079_122421741 | 3300032783 | Soil | MRKAALLYNPDSGGSKQRQRELHDALSILKNGGVEANLCPTNSPDHASQEARR |
| Ga0335078_113999282 | 3300032805 | Soil | MRKAALLYNPDSGGSKQRRRELESALALLRSAHVEADLVPT |
| Ga0335074_107471382 | 3300032895 | Soil | MRKAALLYNPDSGGSGVKQMKRVEAALSVLRSAGVDAELVASE |
| Ga0334790_083129_903_1079 | 3300033887 | Soil | MRKAALLYNPDSGGSKQRLRELESALAILRAGAVDADLVPTDSPVHAIEETRRAIDSGC |
| Ga0370515_0253623_641_745 | 3300034163 | Untreated Peat Soil | MRKAALLYNPDSGGSRRRRQAELESALALLRGSGV |
| Ga0370492_0183853_1_108 | 3300034282 | Untreated Peat Soil | MRKAALLYNPDSGGSRHRRESELNAVLRILSDADVD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |