NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F085044

Metagenome Family F085044

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085044
Family Type Metagenome
Number of Sequences 111
Average Sequence Length 45 residues
Representative Sequence MKQIVLQKILNKQGDSDDETVSSAASSSPPKPEDFQDSQDPYEL
Number of Associated Samples 10
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 34.23 %
% of genes near scaffold ends (potentially truncated) 63.06 %
% of genes from short scaffolds (< 2000 bps) 90.09 %
Associated GOLD sequencing projects 5
AlphaFold2 3D model prediction Yes
3D model pTM-score0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Eukaryota (86.486 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(100.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.
1Ga0058693_10211342
2Ga0058698_106756541
3Ga0058702_100384711
4Ga0058702_100562401
5Ga0058702_100683483
6Ga0058702_101471691
7Ga0058702_101630781
8Ga0058702_101901861
9Ga0058702_101918171
10Ga0058702_102918871
11Ga0058702_103531232
12Ga0058702_103558481
13Ga0058702_103565611
14Ga0058702_103608371
15Ga0058702_104012951
16Ga0058702_104149601
17Ga0058702_104187702
18Ga0058702_104827531
19Ga0058702_105013102
20Ga0058701_100208825
21Ga0058701_100752964
22Ga0058701_100755903
23Ga0058701_100842572
24Ga0058701_100938351
25Ga0058701_100986713
26Ga0058701_101007703
27Ga0058701_101056463
28Ga0058701_101410761
29Ga0058701_101725301
30Ga0058701_102268421
31Ga0058701_102508031
32Ga0058701_102654772
33Ga0058701_102674781
34Ga0058701_102736352
35Ga0058701_103032981
36Ga0058701_103336321
37Ga0058701_103441721
38Ga0058701_103534711
39Ga0058701_103701392
40Ga0058701_103795482
41Ga0058701_103941212
42Ga0058701_103947442
43Ga0058701_104039041
44Ga0058701_104114721
45Ga0058701_104230962
46Ga0058701_104233232
47Ga0058701_104316081
48Ga0058701_104688982
49Ga0058701_104693271
50Ga0058701_104991371
51Ga0058701_106514952
52Ga0058701_106557322
53Ga0058701_107364742
54Ga0058701_107599921
55Ga0058701_107658431
56Ga0058701_107769632
57Ga0058701_107930301
58Ga0058701_107933191
59Ga0209795_100290334
60Ga0209795_100952221
61Ga0209795_102228931
62Ga0209796_101495111
63Ga0268246_100178812
64Ga0268246_100189162
65Ga0268246_100301881
66Ga0268246_100343131
67Ga0268246_100499081
68Ga0268246_100568792
69Ga0268246_100779021
70Ga0268246_101062892
71Ga0268246_101391651
72Ga0268246_101453322
73Ga0268246_101479532
74Ga0268246_101483552
75Ga0268246_101823361
76Ga0268246_101940341
77Ga0268246_101958433
78Ga0268246_101984531
79Ga0268246_102102792
80Ga0268246_102218261
81Ga0268246_102267101
82Ga0268246_102332401
83Ga0268246_102478671
84Ga0268246_102696261
85Ga0268247_100083046
86Ga0268247_100485823
87Ga0268247_100600342
88Ga0268247_100835161
89Ga0268247_100957691
90Ga0268247_101425113
91Ga0268247_101553582
92Ga0268247_101622421
93Ga0268247_101751631
94Ga0268247_101853091
95Ga0268247_102504511
96Ga0268247_102841471
97Ga0268247_102858101
98Ga0268247_102897191
99Ga0268247_103051251
100Ga0268247_103153981
101Ga0268247_103428051
102Ga0268247_103457001
103Ga0268247_103738291
104Ga0268247_103924422
105Ga0268247_104479841
106Ga0268247_104621412
107Ga0268247_104623582
108Ga0268247_105702271
109Ga0268254_100561021
110Ga0268254_101091101
111Ga0268255_102319382
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.50%    β-sheet: 0.00%    Coil/Unstructured: 87.50%
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Variant

510152025303540MKQIVLQKILNKQGDSDDETVSSAASSSPPKPEDFQDSQDPYELSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
86.5%13.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Agave
100.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0058693_102113423300003857AgaveMKQIVLQKILDKXGNSDDDTISSAASSSPPKLEDLQDSQDPYDL*
Ga0058698_1067565413300005661AgaveMIQIVLQKILDKQGNSDDDTISSAASSSPPKPDDLQDSQDPYDL*
Ga0058702_1003847113300009144AgaveIVLQKILDKQGNSDDETVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058702_1005624013300009144AgaveMKQIVLQKILDKQPNSDDDTISSASSSSPPKLEDFQDSQDPYEL*
Ga0058702_1006834833300009144AgaveMKQIVLQKILDKQGDSDADDTMSSAASSAPPKPNDLQDPQDPYEL*
Ga0058702_1014716913300009144AgaveDLLDYLKDDPSMKQIVLQKILNKQGDSDDEPNSSAPSSSPPKPVDIQDSQDPYDL*
Ga0058702_1016307813300009144AgaveEYLKDDPGMKQIVLQKILDKQGDSDEDTVSSTASSSPPKPEDLQDS*
Ga0058702_1019018613300009144AgaveMQQAVLQKILQDSSDDDIASSAASLSPPKLEDMQDSQDPYEL*
Ga0058702_1019181713300009144AgaveMKQIILQKILDKQTNSNDETVSSAASSSPPKPENFQDSQDSYEL*
Ga0058702_1029188713300009144AgaveLKDDPSMKQIVLQKILNKQGDSDDKTVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058702_1035312323300009144AgaveMKQIMLQKILNTQGDCDDEIVSFAASSSSPKPEDFQDSQDPNEL*
Ga0058702_1035584813300009144AgavePDMKQIVLQKILNKQGDSDDETVSSAASSSPPKPEDFQDS*
Ga0058702_1035656113300009144AgaveVLQKILQDNFDDGTASSAASSSPPKPEDFQDSRDPYEL*
Ga0058702_1036083713300009144AgaveLKDDPSMKQIVLQKILNKQEDSDDETNSFAASSSSPKKPEDIQDSQDPYDL*
Ga0058702_1040129513300009144AgaveLKDDPAMKQIVLQKILDKQTNKDDDTVSSASSSAPPKPEDFQDSQDPYEL*
Ga0058702_1041496013300009144AgaveMKQIVLQKIQDKQGNSDDETVSSAASSSPPKPEDFQDS
Ga0058702_1041877023300009144AgaveMKQIVLQKILNKQGDSDDEKVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058702_1048275313300009144AgaveLKDDPDMRQVVLQKILDKQGDSDDETVSSAASSSPPKPEDLQDSQDLYEL*
Ga0058702_1050131023300009144AgaveMKQIVLQKILVKQTNSDDDTISSASSSSPPKPEDFQDS
Ga0058701_1002088253300010395AgaveMQQAVLQKILQDNSDDDTASSTASSSPPKHEDFQDSQDPYEL*
Ga0058701_1007529643300010395AgaveMKQIVLRKILDQQGNSDEDTVSSAASSSPPKPEDLQDSQDPYDL*
Ga0058701_1007559033300010395AgaveMDKQGDSDDDETMSSAASSSPPKPEDFQDSQDPYEL*
Ga0058701_1008425723300010395AgaveMKQIVLQKILDKQGESDEDTISSAASSSPPKPEDLQDPYDL*
Ga0058701_1009383513300010395AgaveILDKHGNSDEDTVSSAASSSPPKPDDLQDSQDPYDL*
Ga0058701_1009867133300010395AgaveLPYLKDDPDMKQIVLQKILDKQGDSDDDDTVSSAVSSAPPKPNGL*
Ga0058701_1010077033300010395AgaveMKQIVLQKILDKQGDSDDDDTVSSAASSVPPKPDDLQNSQDPYEL*
Ga0058701_1010564633300010395AgaveMKQIVLQKILGKNTNSDDDTVSSVSSSSPPKPEDFQDFQDPYEL*
Ga0058701_1014107613300010395AgaveMQQAVLQKILQDNSNDDTASSVASSSPPKPEDFQDSQDPYEL*
Ga0058701_1017253013300010395AgaveMKQIVLQKILNKQGDSDDEPNSSAPSSSPPKPADIQDSQDPYDL*
Ga0058701_1022684213300010395AgaveKILDKQGDSDDETVSSAASSSPPKPEDLQDSQDPYEL*
Ga0058701_1025080313300010395AgaveKDDPDMRQVVLQKILDKQGDSDDETVSSIASFSPPKLEDLQDSQDPYEL*
Ga0058701_1026547723300010395AgaveMKQIVLQKILDKQTESDDKIVSSAASSSPPKQEDLQDSQDPYDL*
Ga0058701_1026747813300010395AgaveKDLLEYLKDDPGMKQIVLQKILDKHCNSDEDTISLAASSSPPKPDDLQDSQDPYDL*
Ga0058701_1027363523300010395AgaveLDYLKDDPSMKQIVLQKILNKQGDSDDETNSSTASSSPPKPEDIQDSQDPYDL*
Ga0058701_1030329813300010395AgaveQIVLQKILDKTDNSDDETVSSAASSSPPKPDSQDPYDL*
Ga0058701_1033363213300010395AgaveLEYLKDDPSMKQIVLQKILDKQTNSDDDTVSFASSSAPPKPEDFQDSQDPYEL*
Ga0058701_1034417213300010395AgaveSKQGDSDDETVSSAASSSPPKPEDFQDSQVPYDL*
Ga0058701_1035347113300010395AgaveDLLEYLKDDPGMKQVVLQKILDKHGNSDEGTISSAASSSPPKPDDLQDSQDPYNL*
Ga0058701_1037013923300010395AgaveMKQIVLQKILNKQGDSDDETVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058701_1037954823300010395AgaveMRQVVLQKILDKQGDSDDETVSSAASSSPPKPEDL*
Ga0058701_1039412123300010395AgaveMKQIVLQKILDKQGNSDDDTLSSAASSSPPKPEDLQDSQDPYDL*
Ga0058701_1039474423300010395AgaveSMKQIVLQKILDKQTNSDDDTVSSASSSSPPKPEDFQDSQDPYEL*
Ga0058701_1040390413300010395AgaveYLKDDPDMKQIMLQKILNKQGDSDDETVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058701_1041147213300010395AgaveERDLLEYLKDDPSMKQIILQKILDKQGDSDDDETVSSAALSSPTKPKDFQDSQDPYEL*
Ga0058701_1042309623300010395AgaveSMKQIVLQKILDKQTNSDDDTISSASSSSPPKPEAFLDSQDPYEL*
Ga0058701_1042332323300010395AgavePNMKQIVLQKILDKQGNSDDETVSSAASSSPPKPKDFQDSQDPHEL*
Ga0058701_1043160813300010395AgaveDYLKDDPDMKQIVLQKILNKQGDSDDETISSAASSSPPKPEDF*
Ga0058701_1046889823300010395AgaveMKQIVLQKILNKQEDSDDETNSSAASSSPPKPEDVQYSQDPYDL*
Ga0058701_1046932713300010395AgaveAMKQIVLQKILDKQTNSDDETVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058701_1049913713300010395AgaveKDDPSMKQIVLQKILDKQGNSDDDTVSLAASSSPQKPEDLQDSQDPYDL*
Ga0058701_1065149523300010395AgaveLQKILDKQGDSDDDTVSSAASSSPPKPEDLQDSQDPYEL*
Ga0058701_1065573223300010395AgaveMKQIMLQKILNTQGDCDDEIVSFAASSSSPKPEDFQDSQDPYEL*
Ga0058701_1073647423300010395AgaveQKILDKQGDLDDETVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058701_1075999213300010395AgavePSMKQIVLQKILNKQGDSDDDTVSSAASSSPPKPEDLQDSQDPYEL*
Ga0058701_1076584313300010395AgaveVLQKILDKHGNSDEDTVSSAASSSPPKPDDLQDSQDPYD
Ga0058701_1077696323300010395AgaveLQKILDKQVDSDDDTVSSTTSSFPPKQEDLQDSQDPCDI*
Ga0058701_1079303013300010395AgaveQVVLQKILDKQGDSDDETVSLAASSSPPKPEDLQDSQDPHEL*
Ga0058701_1079331913300010395AgaveLEYLKDDPSMKQIVLQKILDKQGNSDDKTVSSAAPSSPPKPEDFEDYQNPYEL*
Ga0209795_1002903343300027718AgaveMKQIVLQKILDKQGNSDDDTISSAASSSPPKLEDLQDSQDPYDL
Ga0209795_1009522213300027718AgaveLKDDPSMKQIVLQKILDKQTNSDDDTVSSASSSSPPKPEDFRDSQDPYEL
Ga0209795_1022289313300027718AgaveYLKDDPSMKQIVLQKILDKQMESDDETVSSAASSSPLKQEDLQDSQDPYDL
Ga0209796_1014951113300027766AgaveLKDDPSMKQIVLQKILDKQTESDDETVSSAASSSPPKQEDLQDSQDPYEL
Ga0268246_1001788123300030495AgaveMKQIVLQKILDKQGDSDADDTMSSAASSAPPKPNDLQDPQDPYEL
Ga0268246_1001891623300030495AgaveMKQIVLQKILNKQGDSDDEPNSSAPSSSPPKPADIQDSQDPYDL
Ga0268246_1003018813300030495AgaveMKQIVLQKILGKNTNSDDDTVSSASSSSPPKPEDFQDFQHPYEL
Ga0268246_1003431313300030495AgaveKERDLLEYLKDDPSMKQIVLQKILDQQTNTDDDTVSSASSSSPPKPEDFQHSQDPYEL
Ga0268246_1004990813300030495AgaveLKYLKDDPNMKQIVLQKILDKQGDSDDDTVSYAASSSPPKSEDLQDSEDPYEL
Ga0268246_1005687923300030495AgaveMKQIVLQKILDKQGDSDDDDTVSSAASSAPPKPDDLQDSRDPY
Ga0268246_1007790213300030495AgaveLDKQDNSDDDTVSSAASSSPPKPDDLQDSQDPYEL
Ga0268246_1010628923300030495AgaveMKQIVLQKILNKQGDSDDETNSSATSSSPPKPEDVQDSQDPYDL
Ga0268246_1013916513300030495AgaveMKQIVLQKILDKQGESDEDTISSAASSSPPKPEDLQ
Ga0268246_1014533223300030495AgaveLSQKENELLEYLNDDPDMRQVVLQKILDKQGDSDDETVSSAALSLPPKPKDLQDSQDPYE
Ga0268246_1014795323300030495AgaveMQQVVLQKILDKQGDSDEDTTVSSAASSSPPKLGDPCLQDSQDP
Ga0268246_1014835523300030495AgaveMKQIVLQKILDKQGDSDDDDTMSSAASSVPPKPDDLQNSQDPYEL
Ga0268246_1018233613300030495AgaveMKQIALQKILNKQGDSDDETNSSAASSSPPKPRDVQD
Ga0268246_1019403413300030495AgaveMKQIVLQKSLDKQGDSDDDTVSSAASSTLPKPEDLQD
Ga0268246_1019584333300030495AgaveVSEMQQAVLRKIIQDNLDNDTANSAASSSPPKPEDFQDSQDPYEL
Ga0268246_1019845313300030495AgaveTSCITKKILDKQGDSDDETVSSAASSSPPKPEDLQDSQDPYAL
Ga0268246_1021027923300030495AgaveQKERDLLEYLKDDASMKQIVLQKILDKQTNSDDDTISSASSSSPPKPEDFQDS
Ga0268246_1022182613300030495AgaveYLKDDPSMKQIVLQKILDKQTNSDDDTISSASSSSPPKPEDFQDSQDPYEL
Ga0268246_1022671013300030495AgaveMKQIVLQKILDKQTNSDDETVSSAASSSPPKPEDSQDSHDPYE
Ga0268246_1023324013300030495AgaveMKQIVLQKILDKQGDSDDDDTVSSAASSAPPKPDDL
Ga0268246_1024786713300030495AgaveMKQIVLQKILDKQDDSHDDDTVSSVASSAPPKPDDLQDSHDPYEL
Ga0268246_1026962613300030495AgaveMQQAVLQKILQDNSDDDTASSAASSSPPKPEDMQDSQDPYEL
Ga0268247_1000830463300030498AgaveMKRIVPQKIMDKQRHSDDDTVSSASSFTPPKPEDLQDSQDPYDL
Ga0268247_1004858233300030498AgaveMKQIVLQKILDKQGDSDDDDTVSSAASSVPPKPDDLQNSQDPYEL
Ga0268247_1006003423300030498AgaveMKQIVLQKILDKQGNSDDDTLSSAASSSPPKPEDLQDSQDPYDL
Ga0268247_1008351613300030498AgaveDDPSMKQIVLQKILDKQGNSDDDTISSAASSSPPKPDDLQDSQDPYDL
Ga0268247_1009576913300030498AgaveLSQNERDLLEYLKDDHSMKQIVLQKILDKQTKSDDDTISSASSSSPPKPADFQDSQDPYE
Ga0268247_1014251133300030498AgaveMQQAVLQKILQDSSDDDIASSAASLSPPKLEDMQDSQDPYEL
Ga0268247_1015535823300030498AgaveMQQAVLQKILQDNSDDDTASSTASSSPPKHEDFQDSQDPYEL
Ga0268247_1016224213300030498AgaveMRQVVLQKILDKQGDSDDETVSSAASSSPPKPEDL
Ga0268247_1017516313300030498AgaveKQIVLQKILNKQRDSDDETVSSAASSSSPPKPEDFQDSQDPYEL
Ga0268247_1018530913300030498AgaveDLLEYLKDDPSMKQIVLQKILDKQRQGDEDTVSSASSSSPPKPEDFQDSQDPYDF
Ga0268247_1025045113300030498AgaveMKQIVLQKILDKQGDSDDETASSAASSSPPKSEDLQDSQDPYEL
Ga0268247_1028414713300030498AgaveMKQIVLQKILNKQGDSDDETNSPAASSPPPKPEDVQDSQDPYDL
Ga0268247_1028581013300030498AgaveLQKILDKKDNSDDETVSSAASSSPPKPEDYQDSQDPYDL
Ga0268247_1028971913300030498AgaveILDKLGDSDDETVSSAASSSPPKPEDFQDSQDPYEL
Ga0268247_1030512513300030498AgaveMKQIVLQKILDKQGDSDDDETASSAASSSPPKPEDFQDSQDPYEL
Ga0268247_1031539813300030498AgaveQKXSGNAQAVLQKILQDNSDDDTASSAASSSPPKLEDMQDSQDPYEL
Ga0268247_1034280513300030498AgaveKDDPNMKQIVLQKILDKQGDSDDDAVNSAASSSLPKSEDLQDSQDPYEL
Ga0268247_1034570013300030498AgaveLQKILDKQTNSDDDTVSSASSSAPPKPEDLQDSQDPYEL
Ga0268247_1037382913300030498AgaveKNDPEMQQAVLQKILYANSDDDTASLAASSSPPKPKDFQDSHDSYEL
Ga0268247_1039244223300030498AgaveILDKQGDSDDDETMSSAASSSPPKPEDFQDSQDPYEL
Ga0268247_1044798413300030498AgaveKQIVLQKSLDKHGDSDNDTVSSAASSSPPKHEDLHDSHDPYDL
Ga0268247_1046214123300030498AgaveKQIVLQKILDKQTNSDDETVSTAASSSPPKPEDFQDSQDPYEL
Ga0268247_1046235823300030498AgaveMKQIVLQKILNKQGDSDDETVSSAASSSPPKPEDFQDSQDPYEL
Ga0268247_1057022713300030498AgaveMKQIVLQKILDYQTESDDETVSFTASSSPPKQEDLQDSQDPYEL
Ga0268254_1005610213300030515AgaveMKQIVLQEILDKHGNSDEDTVSSAASSLPPKLDDLQDSQDTYD
Ga0268254_1010911013300030515AgaveQIVLQKILDKQGNSDDETVSSAASSSPPKPEDFQDSQDPYEL
Ga0268255_1023193823300030516AgavePTMKQIVLQKILDKQTNSDDETVSTAASSSPPKPEDFQDSQDPYEL


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