Metagenome / Metatranscriptome Family F085012

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085012
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	47 residues
Representative Sequence	MRGSDGHELSILIRLGDGDRAGRGPSNVSTMIIRPPQHGQRRAG
Number of Associated Samples	84
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.93 %
% of genes near scaffold ends (potentially truncated)	75.68 %
% of genes from short scaffolds (< 2000 bps)	90.09 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.270 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (15.315 % of family members)
Environment Ontology (ENVO)	Unclassified (34.234 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.559 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 13.89% Coil/Unstructured: 86.11%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02371	Transposase_20	2.70
PF00589	Phage_integrase	2.70
PF01548	DEDD_Tnp_IS110	0.90
PF00206	Lyase_1	0.90
PF04014	MazE_antitoxin	0.90
PF01261	AP_endonuc_2	0.90
PF03492	Methyltransf_7	0.90
PF13463	HTH_27	0.90
PF00078	RVT_1	0.90
PF05225	HTH_psq	0.90
PF01188	Obsolete Pfam Family	0.90
PF01039	Carboxyl_trans	0.90
PF04008	Adenosine_kin	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	3.60
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.90
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.90
COG1839	Adenosine/AMP kinase	Nucleotide transport and metabolism [F]	0.90
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
All Organisms	root	All Organisms	29.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
cellular organisms	root	All Organisms → cellular organisms	29.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.11 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.70 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Pseudoxanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pseudoxanthobacteraceae	0.90 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.90 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.90 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.90 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.90 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Komagataeibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter	0.90 %
Tahibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Tahibacter	0.90 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.90 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.90 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	0.90 %
Pseudoxanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pseudoxanthobacteraceae → Pseudoxanthobacter	0.90 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.90 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.90 %
Skermanella mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	0.90 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.90 %
Tahibacter aquaticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Tahibacter → Tahibacter aquaticus	0.90 %
Pseudoxanthobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pseudoxanthobacteraceae → Pseudoxanthobacter → Pseudoxanthobacter soli	0.90 %
Komagataeibacter intermedius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter intermedius	0.90 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.27 %
Komagataeibacter intermedius AF2	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter intermedius → Komagataeibacter intermedius AF2	0.90 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.90 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.90 %
Skermanella mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	0.90 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.90 %
Tahibacter aquaticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Tahibacter → Tahibacter aquaticus	0.90 %
Pseudoxanthobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pseudoxanthobacteraceae → Pseudoxanthobacter → Pseudoxanthobacter soli	0.90 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10018298	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300004152\|Ga0062386_101210266	Not Available	628	Open in IMG/M
3300004152\|Ga0062386_101352757	Not Available	593	Open in IMG/M
3300005921\|Ga0070766_10507975	Not Available	801	Open in IMG/M
3300006052\|Ga0075029_100900687	Not Available	606	Open in IMG/M
3300006059\|Ga0075017_100325153	Not Available	1140	Open in IMG/M
3300006059\|Ga0075017_100926322	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300009521\|Ga0116222_1376224	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300009522\|Ga0116218_1040988	All Organisms → cellular organisms → Bacteria → Proteobacteria	2094	Open in IMG/M
3300009524\|Ga0116225_1369274	Not Available	638	Open in IMG/M
3300009525\|Ga0116220_10438631	Not Available	587	Open in IMG/M
3300009683\|Ga0116224_10315577	Not Available	743	Open in IMG/M
3300009683\|Ga0116224_10354797	Not Available	697	Open in IMG/M
3300009698\|Ga0116216_10503392	Not Available	732	Open in IMG/M
3300009700\|Ga0116217_10283272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1069	Open in IMG/M
3300010048\|Ga0126373_11896648	Not Available	659	Open in IMG/M
3300010339\|Ga0074046_10048265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pseudoxanthobacteraceae → Pseudoxanthobacter → Pseudoxanthobacter soli	2836	Open in IMG/M
3300010339\|Ga0074046_10232948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Tahibacter → Tahibacter aquaticus	1148	Open in IMG/M
3300010339\|Ga0074046_10485585	Not Available	739	Open in IMG/M
3300010339\|Ga0074046_10567079	Not Available	674	Open in IMG/M
3300010339\|Ga0074046_10856263	Not Available	530	Open in IMG/M
3300010341\|Ga0074045_10483892	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300010341\|Ga0074045_10783241	Not Available	603	Open in IMG/M
3300010341\|Ga0074045_10783433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	603	Open in IMG/M
3300010341\|Ga0074045_10929128	Not Available	548	Open in IMG/M
3300010343\|Ga0074044_10335074	All Organisms → cellular organisms → Bacteria → Proteobacteria	993	Open in IMG/M
3300010343\|Ga0074044_10854010	Not Available	595	Open in IMG/M
3300010343\|Ga0074044_10930753	Not Available	569	Open in IMG/M
3300010371\|Ga0134125_12703216	Not Available	539	Open in IMG/M
3300010379\|Ga0136449_103663397	Not Available	581	Open in IMG/M
3300012078\|Ga0153999_1073624	Not Available	626	Open in IMG/M
3300012089\|Ga0153924_1118975	Not Available	542	Open in IMG/M
3300014162\|Ga0181538_10547829	Not Available	606	Open in IMG/M
3300014164\|Ga0181532_10762138	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300014165\|Ga0181523_10703412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300015206\|Ga0167644_1047928	Not Available	1552	Open in IMG/M
3300015206\|Ga0167644_1073805	Not Available	1107	Open in IMG/M
3300016319\|Ga0182033_11386471	Not Available	633	Open in IMG/M
3300017822\|Ga0187802_10402163	Not Available	542	Open in IMG/M
3300017823\|Ga0187818_10534855	Not Available	527	Open in IMG/M
3300017927\|Ga0187824_10389829	Not Available	506	Open in IMG/M
3300017942\|Ga0187808_10482035	Not Available	573	Open in IMG/M
3300017946\|Ga0187879_10559421	Not Available	635	Open in IMG/M
3300017948\|Ga0187847_10896955	Not Available	504	Open in IMG/M
3300017955\|Ga0187817_10900424	Not Available	566	Open in IMG/M
3300017959\|Ga0187779_10708390	Not Available	681	Open in IMG/M
3300017959\|Ga0187779_11334646	Not Available	509	Open in IMG/M
3300017961\|Ga0187778_10805299	Not Available	641	Open in IMG/M
3300017972\|Ga0187781_11120496	Not Available	578	Open in IMG/M
3300017975\|Ga0187782_10677012	Not Available	795	Open in IMG/M
3300018001\|Ga0187815_10378695	Not Available	602	Open in IMG/M
3300018006\|Ga0187804_10391856	Not Available	614	Open in IMG/M
3300018009\|Ga0187884_10224745	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300018013\|Ga0187873_1170790	Not Available	823	Open in IMG/M
3300018035\|Ga0187875_10720621	Not Available	524	Open in IMG/M
3300018040\|Ga0187862_10910788	Not Available	502	Open in IMG/M
3300018058\|Ga0187766_10298218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	1043	Open in IMG/M
3300018058\|Ga0187766_10773259	Not Available	669	Open in IMG/M
3300018058\|Ga0187766_11048819	Not Available	583	Open in IMG/M
3300018058\|Ga0187766_11338883	Not Available	523	Open in IMG/M
3300018060\|Ga0187765_10638222	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300018085\|Ga0187772_10054852	All Organisms → cellular organisms → Bacteria	2460	Open in IMG/M
3300018085\|Ga0187772_11211808	Not Available	556	Open in IMG/M
3300018086\|Ga0187769_10903318	Not Available	668	Open in IMG/M
3300018086\|Ga0187769_11425099	Not Available	524	Open in IMG/M
3300018088\|Ga0187771_11722468	Not Available	532	Open in IMG/M
3300018090\|Ga0187770_11715548	Not Available	513	Open in IMG/M
3300021361\|Ga0213872_10467511	Not Available	505	Open in IMG/M
3300021420\|Ga0210394_10380897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	1241	Open in IMG/M
3300021444\|Ga0213878_10143368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	989	Open in IMG/M
3300022726\|Ga0242654_10010756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2001	Open in IMG/M
3300025913\|Ga0207695_11197899	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300025915\|Ga0207693_10541772	Not Available	908	Open in IMG/M
3300025981\|Ga0207640_12068985	Not Available	516	Open in IMG/M
3300026281\|Ga0209863_10202724	Not Available	574	Open in IMG/M
3300026865\|Ga0207746_1020272	Not Available	553	Open in IMG/M
3300027625\|Ga0208044_1116343	Not Available	766	Open in IMG/M
3300027696\|Ga0208696_1230955	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300027783\|Ga0209448_10276216	Not Available	552	Open in IMG/M
3300027812\|Ga0209656_10244973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter intermedius → Komagataeibacter intermedius AF2	850	Open in IMG/M
3300027812\|Ga0209656_10447778	Not Available	571	Open in IMG/M
3300027824\|Ga0209040_10009759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	6761	Open in IMG/M
3300027824\|Ga0209040_10013711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5517	Open in IMG/M
3300027824\|Ga0209040_10468279	Not Available	568	Open in IMG/M
3300028015\|Ga0265353_1020592	Not Available	639	Open in IMG/M
3300028742\|Ga0302220_10360872	Not Available	524	Open in IMG/M
3300029987\|Ga0311334_11560114	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300030524\|Ga0311357_11849101	Not Available	501	Open in IMG/M
3300031057\|Ga0170834_110509809	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300031122\|Ga0170822_13134016	Not Available	702	Open in IMG/M
3300031564\|Ga0318573_10529447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300031681\|Ga0318572_10300126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300031831\|Ga0318564_10343076	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031946\|Ga0310910_11498714	Not Available	517	Open in IMG/M
3300032001\|Ga0306922_12282126	Not Available	520	Open in IMG/M
3300032160\|Ga0311301_10753758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1351	Open in IMG/M
3300032205\|Ga0307472_102195842	Not Available	557	Open in IMG/M
3300032805\|Ga0335078_12243798	Not Available	574	Open in IMG/M
3300032829\|Ga0335070_10441262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1240	Open in IMG/M
3300032892\|Ga0335081_11810811	Not Available	660	Open in IMG/M
3300032892\|Ga0335081_12661828	Not Available	512	Open in IMG/M
3300032896\|Ga0335075_10384375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1503	Open in IMG/M
3300032896\|Ga0335075_11438253	Not Available	578	Open in IMG/M
3300032954\|Ga0335083_10674303	Not Available	842	Open in IMG/M
3300032954\|Ga0335083_11506306	Not Available	510	Open in IMG/M
3300032955\|Ga0335076_10173822	Not Available	2063	Open in IMG/M
3300033405\|Ga0326727_11131849	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300034282\|Ga0370492_0229216	Not Available	756	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.50%
Host-Associated	Host-Associated	4.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.27%
Aquatic	Environmental → Aquatic	25.23%
Plants	Host-Associated → Plants	2.70%
Fungi	Host-Associated → Fungi	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Freshwater	Environmental → Aquatic → Freshwater	22.52%
Peat	Environmental → Terrestrial → Peat	3.60%
Sediment	Environmental → Aquatic → Sediment	2.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%
Mycelium	Host-Associated → Fungi → Mycelium	1.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.90%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	36.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Loam	Environmental → Terrestrial → Soil → Loam	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	35.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.12%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	15.32%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.71%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	10.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.11%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.31%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.70%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.80%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.90%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.90%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.90%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012078	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC083 MetaG	Host-Associated	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026865	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 75 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100182982	3300003218	Bog Forest Soil	MRGDGHELSILIRLGDGERQGCGPSNVSTTIIRPPQHGQRRAGETSSARLSASREG
Ga0062386_1012102662	3300004152	Bog Forest Soil	LRGGKLGDCHEVSIQMRVGAEDRVGRGPSNISMMIIRPPQHGH
Ga0062386_1013527571	3300004152	Bog Forest Soil	GKRGDCHEVSILIRVGDGERSGRAPSKVSTMIIRPPQHGH*
Ga0070766_105079751	3300005921	Soil	LRGGKRSDDHEVSIRMRLGDGDLAGRGPSKVSTMIIRPPQHGQRR
Ga0075029_1009006871	3300006052	Watersheds	VRGGMRGDGHELSILIRLGDGERQGRCPSNVSTMIIRPPQQGQRRAGETS
Ga0075017_1003251531	3300006059	Watersheds	VRGGMRGDGHELSILIRLGDGERQGRGPSNVSTMIIRPPQQGQRRAGETSSARLSA
Ga0075017_1009263222	3300006059	Watersheds	MLEGGRCGGGHEVSILIRLGGRCRTGRAPSNVSTMIIRPPQQGQRRA
Ga0116222_13762241	3300009521	Peatlands Soil	VHDDGHEVSILIRLGDGDRVGRGPSNVSTMIIRPPQQ
Ga0116218_10409883	3300009522	Peatlands Soil	MRGDGHEVSYSILIRFSDGDRPGRAPSNVSMMIIRPPQHGHRRAGNGASASLSASPGLR*
Ga0116225_13692742	3300009524	Peatlands Soil	MRGDGHEVSLLIRFGDGDRPGRAPSNVSMMIIRPPQHGHRRAGNGASASLSASSGLR*
Ga0116220_104386311	3300009525	Peatlands Soil	MGGGHELSILIRVGDEDCLGRSPSKFSTMIIRPPQHG
Ga0116224_103155771	3300009683	Peatlands Soil	MRGDGHELSILIRLGDDARQGRGPSNVSTMIIRPPQQGQRRAGETS
Ga0116224_103547971	3300009683	Peatlands Soil	MRGDGHELSILIRLGDGERQGRGPSNVSTMIIRPPQQGQR
Ga0116216_105033921	3300009698	Peatlands Soil	VHDDGHEVSILIRLGDGDRVGRGPSNVSTMIIRPPQQGQRRAGETSSAWLS
Ga0116217_102832722	3300009700	Peatlands Soil	MRGAGHEVSILIRLGDGDHAGRGPSNVSTMIIWPPEHGHRR
Ga0126373_118966481	3300010048	Tropical Forest Soil	LQGGKRGDDHEVSILIRLGDEDRAGRAPSNVSTTIIRPP
Ga0074046_100482655	3300010339	Bog Forest Soil	MRGDDHEVSILIGVGDGERAGRTPSKVSTMIIRPPQHG
Ga0074046_102329481	3300010339	Bog Forest Soil	MRGDGHEVSILIRLGDGDRPGRGPWKVSTTNIRPPQHGQRRKGESGSASPSAGALPVETL
Ga0074046_104855851	3300010339	Bog Forest Soil	MRGDGHEVSILIRVGGGRAGRTPSNVSTMIIRPPQQGQRRTGEGALVSLSSTPQFA*
Ga0074046_105670791	3300010339	Bog Forest Soil	MRGDGHEVSILIRLGDGDREGRGPPNVSMTIIRPPQHGHRRADEGV
Ga0074046_108562631	3300010339	Bog Forest Soil	MRGDGHELSILIRLGDGDRAGRGPSKVSTTIIRPPQHGQRRAGETSSARLSA
Ga0074045_104838922	3300010341	Bog Forest Soil	MRGDGHEVSILIRFSDGDRPGRAPSNVSMMIIRPPQHGHRRAGNGASASLSASPGLR*
Ga0074045_107832411	3300010341	Bog Forest Soil	MRGDGHEVSILIRLGDGDRAGRGPSKVSTTIIRPPQHGQRRAGETSSARLSAS
Ga0074045_107834331	3300010341	Bog Forest Soil	LRGGERGDGHEVSILIGVGDGERAGRTPSKVSTMIIRPPQQGQRRTG
Ga0074045_109291281	3300010341	Bog Forest Soil	MRGDGHELSILIRLGDGERRGRGPSKVSTTIIRPPQHGQRRAGE
Ga0074044_103350742	3300010343	Bog Forest Soil	LRVGKRGDDHHEVSILIRLGDGERAAPGPSNVSTMIIWPPEHGHRRADEGASVSLSASAC
Ga0074044_108540101	3300010343	Bog Forest Soil	LRGGQRGDEHEVSILIRPGGGGRAGRTPSKVSMMIIRPPQQGHRRAGK
Ga0074044_109307532	3300010343	Bog Forest Soil	MGGDGHEVSILIRLGDRDCVGRAPSNVSTMIIRPPQHGHRRAV
Ga0134125_127032161	3300010371	Terrestrial Soil	MWGDGHEVSILIRVGDWERQGRGPSNVSTTIIRPPQQGQRRADETSSAG
Ga0136449_1036633971	3300010379	Peatlands Soil	GRERMRSKTLEGGRLGDGHEVSILIRLGDGDRAGRGPPNVSTTIIRPPQHGQRRAGERSSA*
Ga0136449_1042321521	3300010379	Peatlands Soil	LGGGKHGDGDHEVSILIRFGGGDRAGRAPSKVSTMIIRP
Ga0153999_10736242	3300012078	Attine Ant Fungus Gardens	VSILIRLGEKDRAARALSNVSMMTIRPPQQGHRRAG
Ga0153924_11189751	3300012089	Attine Ant Fungus Gardens	MRGDGHELSILIRVGDGERQGRGRSNVSTMIIRPPQQGQRRAGE
Ga0181538_105478291	3300014162	Bog	MHGDGHEVSILIRLGDGDRAGRGPPNVSTTIIRPPQHGQRRAGERSSA*
Ga0181532_107621381	3300014164	Bog	MRSKTLEGGRRGDGHELSILIRLGGRCGAGRAPSNVSTMIIRPPQHGQRRAGERSSA*
Ga0181523_107034121	3300014165	Bog	MRGDGHEVSILIRFGDGDRPGRAPSNVSMMIIRPPQHGHRRAGNGASASLSASSGLR*
Ga0167644_10479283	3300015206	Glacier Forefield Soil	LRGGKRGGGHEVSILIRLGDGDREERAPSNLSAVIIRPPQHGH*
Ga0167644_10738052	3300015206	Glacier Forefield Soil	LRGGKRGDGHEVSILIGLGDGEREERAPSNVSTMIIRPPQPGCKRRSNNP
Ga0182033_113864711	3300016319	Soil	MRGDGHELSILIRFGDGERQGRWPSKVSTMIIRPPQHGQWC
Ga0182040_105828961	3300016387	Soil	LGGGKQGDVDHEVSILIWLGDEDRAGRAPSNVSMMI
Ga0187802_104021631	3300017822	Freshwater Sediment	LRGGKRGDGHEVSILIRLGEGERAGRGDSNVSTMIIRPPQH
Ga0187818_105348551	3300017823	Freshwater Sediment	LRGGKRGDGHEVSILIRVGDGERAGRAASKVSTMIIRPPQQGQRRTGEGPS
Ga0187824_103898291	3300017927	Freshwater Sediment	LRGGKGGDGHEVSILIRVGDGEREERAPSKVSTMIIRPPQYGH
Ga0187808_104820351	3300017942	Freshwater Sediment	MRRDGHEVSILIRLGGEDRAGRAPSNVSTMIIRPPQHGHRRA
Ga0187879_105594211	3300017946	Peatland	MHGDGHEVSILIRLGDGDRAGRGPPNVSTTIIRPPQHGQRRAGERSSA
Ga0187847_108969551	3300017948	Peatland	LRSEKRGDDGHEVSILIRLGDGEREERAPSNVSTVIIRPPRHGH
Ga0187817_109004241	3300017955	Freshwater Sediment	LRGGERGDGHEVSILIGVGDGERAGRTPSKVSTMIIRPPQHGHRR
Ga0187779_107083902	3300017959	Tropical Peatland	MRGDGHELSILMRVGDGERQWRGPSKVSTTIIRPPQHGQRRAGETSSA
Ga0187779_113346461	3300017959	Tropical Peatland	MRGAGHDVSILSRLGDGEGQGRGPSNVSTMIIRPPQQGQRRAGVTSSAGLPASREGLGAL
Ga0187778_108052991	3300017961	Tropical Peatland	MRGGIGGDGHELSILIRLVDGERQGRGPSNVSTMIIRPPQQGQGRAGETSSV
Ga0187781_111204961	3300017972	Tropical Peatland	MRGDGHEVSILIRFGDGDPAGRAPSNVSTMIIRPPQHGHRR
Ga0187782_106770121	3300017975	Tropical Peatland	MRGDGHEVSILIRLGAGDRAGRGPPNVSTMIIRPPQH
Ga0187815_103786951	3300018001	Freshwater Sediment	LGGGKRGDGHEVSMLIRVGDGGRAGRAPSNVSTTIIRPPQHGHRRA
Ga0187804_103918561	3300018006	Freshwater Sediment	VSILIGVGDGERAGRGPSNVSMMIMRPPQHGHRRAGEAVSAALSAS
Ga0187884_102247452	3300018009	Peatland	MRGDGHEVSILIRFGDGDRPGRAPSNVSMMIIRPPQHGHRRAGNGASASLSASSGLR
Ga0187873_11707901	3300018013	Peatland	MRDGGHEVSILMRLGDGDCAGRTPSNVSTMIMRPPQQGQRRAGETSSASPST
Ga0187875_107206211	3300018035	Peatland	MRGGIVGAGHEESILIRVGDGERQGRGPSNVSTMIVSI
Ga0187862_109107881	3300018040	Peatland	MRDGGHEVSILMRLGDGDCAGRTPSNVSTMIMRPPQQGQRRAGEKIW
Ga0187766_102982182	3300018058	Tropical Peatland	MRGAGHDVSILIRIGEGDRAGRGPSNVSTTIIRPPQHGQRRAGETSSA
Ga0187766_107732591	3300018058	Tropical Peatland	MRGDGHELSILIRLGDEDRAGRAPSNVSTMIIRPPQHGHRRSGEDVSVALSASACALW
Ga0187766_110488191	3300018058	Tropical Peatland	MRGDGHELSILIRLGDGERQGRSPSNVSMMIIRPPQHGQRRAGATPSA
Ga0187766_110746641	3300018058	Tropical Peatland	MRGDGHELSILIRLGDEERAGRAPSTVSTMIMRPPQHGHRRSGEDVSVALSASAGALWDETLGAA
Ga0187766_113388831	3300018058	Tropical Peatland	LRGGMRGDGHELSILIRVGDGERQGRGPSNVSTTIIRPPQQGQRRTGGT
Ga0187765_106382222	3300018060	Tropical Peatland	VRSDGHEVSILIRFGDGERQGLWPSKVSTMIIRPPQ
Ga0187772_100548521	3300018085	Tropical Peatland	RGDGHELSILIRLGDGERQGRSPSNVSMMIIRPPQHGQRRAGETSSA
Ga0187772_112118081	3300018085	Tropical Peatland	MRGDGHELSILIRLGDEDRAGRAPSSVSTMIIRPPQHGHRRSGEDVSVA
Ga0187769_109033182	3300018086	Tropical Peatland	MRSDGHEVSILIRFGDGDRAGRGPWNISTMVIRPPQHGHR
Ga0187769_114250991	3300018086	Tropical Peatland	MRGSDGHELSILIRLGDGDRAGRGPSNVSTMIIRPPQHGQRRAG
Ga0187771_117224681	3300018088	Tropical Peatland	VRGGMRGDGHELSMLIRVGDGERQRRGPSNVSTMIIRPPQHGQ
Ga0187770_117155481	3300018090	Tropical Peatland	MRGSDGHELSILIRGGDGERQGRGPSNVSTMIIRPPQHGQRRAGETSSAWLSASV
Ga0213872_104675111	3300021361	Rhizosphere	MVRGGMRGDGHELSILIRLGDGDRAGRGPSNVSTMIIRPPQHGQRRAGETSSAWLSASAR
Ga0210394_103808972	3300021420	Soil	MRGAGHEVSILIRLGDGDRAGRGPSNVSTMIIRPPQHGQRRAGATSSSLT
Ga0213878_101433683	3300021444	Bulk Soil	MRGDGHEVSILIRLGDRGRAGRAPSNVSTMIMRPPQQGHRG
Ga0242654_100107561	3300022726	Soil	MRGAGHEVSILIRLGDGDRAGRGPSNVSTMIIRPPQHGQRRAGATSSA
Ga0207695_111978991	3300025913	Corn Rhizosphere	MRGDGHEVSILIRFVDGDRAGRGPSKVSTMIIRPPQHGQRRGDETSSA
Ga0207693_105417721	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MARGGTHGDGHEVSILIRLGGGDCAGRGPSNVSTMIMRPPQHGHWCASVLASLAASACA
Ga0207640_120689851	3300025981	Corn Rhizosphere	MRGDGHEVSILIRLVDGDRAGRGPSKVSTMIIRPPQHGQRRGDETRR
Ga0209863_102027241	3300026281	Prmafrost Soil	LRGGKRGDGHEVSILIRLGDGEREERAPSNVSTVIIRPPQHGH
Ga0207746_10202721	3300026865	Tropical Forest Soil	MRGDGHELSILIRLGDGERQGGGPSNVSTMIIRPPQHGHRRKDEGGSASLSAPAGALSGEALDAASKC
Ga0208044_11163431	3300027625	Peatlands Soil	VRGGMRGDGHELSILIRLGDDARQGRGPSNVSTMIIRPPQQGQRRAGETSSARLSAS
Ga0208696_12309552	3300027696	Peatlands Soil	LIRFSDGDRPGRAPSNVSMMIIRPPQHGHRRAGNGASASLSASPGLR
Ga0209448_102762161	3300027783	Bog Forest Soil	VSILIRIGDGERVGRGPSNISMMIIRPPQHGHRRAGKGVSVSLSASACALW
Ga0209656_102449731	3300027812	Bog Forest Soil	MRGEGHELSILIRLGDGERQGRGPSNVSTMIIRPPQQGQR
Ga0209656_104477781	3300027812	Bog Forest Soil	LRGGEDGDRDHEVSILMRVGAEDRAGRAPSNVSTMIIRPPQHGH
Ga0209040_100097591	3300027824	Bog Forest Soil	GKRGDCHEVSILIRVGDGERSGRAPSKVSTMIIRPPQHGH
Ga0209040_100137119	3300027824	Bog Forest Soil	MVRGGMRGDGHELSILIRLGDGERQGRGPSNVSTMI
Ga0209040_104682791	3300027824	Bog Forest Soil	MRGDDHEVSILIRIGEGERVGRGPSNISMMIIRPPQHGHRRAGKGVSVS
Ga0265353_10205921	3300028015	Soil	VCGGMRGDGHELSILIRLGDDERQERGPSNVSTMIIRPPQQGQ
Ga0302220_103608721	3300028742	Palsa	VRGWMRGDGHELSILIRLGDGERQGRGPSNVSTMIIRPPQQGQRRAG
Ga0311334_115601141	3300029987	Fen	MMLEVRRRGDGQEVSILIGLGWRCRAGRAPSNVSTMIIRPPQQGQRRAGETASAW
Ga0311357_118491011	3300030524	Palsa	LRDGKRGDGHEVSILIRLGDGEREERAPSNVSTVIIRPPQHGH
Ga0170834_1105098092	3300031057	Forest Soil	LRGGKRGDGHEVSILIRLGDGEREERAPLNVSTMIIRPPQPGHGRKGEGLSA
Ga0170822_131340161	3300031122	Forest Soil	LRGGKRGDGHEVSILIRLGDGEREERAPSNVSTMIIRPPQPGHGRKGEGLSA
Ga0318573_105294471	3300031564	Soil	MRDDGHEVSILIRLGGADRAGRAPSKVSTMIIRPPQQGHRCDGEGV
Ga0318572_103001261	3300031681	Soil	MRGGMRDDGHEVSILIRLGGADRAGRAPSKVSTRIIRPPHRGHRCDG
Ga0318564_103430761	3300031831	Soil	MALRGGKCSDGHEVSILIWLGGRAGRAPSKVSTMIIRPPQQGHRCAGEGAS
Ga0310910_114987141	3300031946	Soil	VSILIRLGDGDLAGRGPSKVSTMIIRPPQHGQRRAGGT
Ga0306922_122821261	3300032001	Soil	MRGDGHELSILIWAGDGERQGCGPWNVSTMIIRPP
Ga0311301_107537583	3300032160	Peatlands Soil	LRGGVRCDGHEVSILIRLGGGDRAGRALSNVSTTSIRPPQ
Ga0307472_1021958422	3300032205	Hardwood Forest Soil	MHGDGHEVSILIRVGDGDCAGCGPSNVSMMIIRPPQH
Ga0335078_122437981	3300032805	Soil	LRGGWQGDVDHEVSILIRLGEVDRAGRAPSSVSMMTVRPPQHGH
Ga0335070_104412623	3300032829	Soil	MRGDGHELSILIRLGDGERQGRGPSNVPTMIIRPPQQGQRPWPDDRRHAT
Ga0335081_118108112	3300032892	Soil	RGDGHEVSILMRVGAEERAGRAPSKVSTMIIRPPQHGH
Ga0335081_126618281	3300032892	Soil	VRGMRGVGHDVSILIRLGDGERQGRGPSNVSTMIIRPPQHGQRRAGETTSAWPSV
Ga0335075_103843751	3300032896	Soil	MRGDDHELSILIRLGDGERQGRGPSKVSMMIIRPPQQGQRRAGETSSAGLSASREG
Ga0335075_114382532	3300032896	Soil	MRGDGHEVSILIRVGDGDCAGRAPSNVSMMIIRPPQHG
Ga0335083_106743031	3300032954	Soil	MRGDGHELSILIRLGEGDRAGRGPSNVSTMIIRPPQQGQRPEGETSSAGLSVLREGWGA
Ga0335083_115063061	3300032954	Soil	MRGDGHELSILIRLGDGERGRAPSNVSMMIIRPPQHGQRRAGETSSAWLFASAG
Ga0335076_101738221	3300032955	Soil	VRGGMRGDGHELSILIRVGDGERQARGPSNVSTMIIRPPQQGQRRAGETSSARLSASA
Ga0326727_111318491	3300033405	Peat Soil	LGGGKRGDDAHEVSILIRLGDEDRAGRAPSNVSMMIMRPPQHGHRRAGKGASASLSALAGLR
Ga0370492_0229216_3_164	3300034282	Untreated Peat Soil	MRGDGHELSILIRDGERQGRGPSNVSTMIIRPPQQGQRRAGEAASAWPSVSACE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085012

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences