Metagenome / Metatranscriptome Family F084979

Overview

Basic Information

• Family ID: F084979
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 111
• Average Sequence Length: 40 residues
• Representative Sequence: MARRFAKVLEEEIEEAFFYPSDLVNTKTTIPLRVGEE
• Number of Associated Samples: 12
• Number of Associated Scaffolds: 111

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 0.90 %
• % of genes from short scaffolds (< 2000 bps): 0.90 %
• Associated GOLD sequencing projects: 9
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral (60.360 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus (100.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 33.85%
  β-sheet: 0.00%
  Coil/Unstructured: 66.15%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF09730	BicD	1.80
PF14378	PAP2_3	1.80
PF12796	Ank_2	0.90
PF00503	G-alpha	0.90
PF14705	Costars	0.90
PF02460	Patched	0.90
PF00012	HSP70	0.90
PF00078	RVT_1	0.90
PF14604	SH3_9	0.90
PF00566	RabGAP-TBC	0.90
PF00836	Stathmin	0.90
PF05839	Apc13p	0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.90

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300013948|Ga0116699_1049216	Not Available	647
3300022596|Ga0215183_1110494	Not Available	2142

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Invertebrates	Host-Associated → Invertebrates	100.00%

Category

Habitat	Taxonomy	Distribution
Cnidaria	Host-Associated → Invertebrates → Cnidaria	100.00%

Type

Habitat	Taxonomy	Distribution
Coral	Host-Associated → Invertebrates → Cnidaria → Coral	100.00%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified	100.00%

Habitat

Habitat	Taxonomy	Distribution
Coral	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral	60.36%
Coral	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral	35.14%
Coral Tissue	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral Tissue	4.50%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300010034	Coral microbial communities from Lord Howe Island, Old Settlement Bay, Australia - Cyphastrea 1 metagenome	Host-Associated
3300010035	Coral microbial communities from Lord Howe Island, Old Settlement Bay, Australia - Cyphastrea 2 metagenome	Host-Associated
3300013948	Coral microbial communities from a home aquarium in Belgium - AM-T0-control A	Host-Associated
3300022595	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T2 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022596	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T1 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022597	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T3 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022598	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C1 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022599	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C2 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022600	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C3 (Eukaryote Community Metatranscriptome)	Host-Associated
3300027103	APAL control metatranscriptome co-assembly	Host-Associated
3300027264	APAL treatment metatranscriptome co-assembly	Host-Associated
3300027507	APAL treatment+control metatranscriptome co-assembly	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0126342_100154273	3300010034	Coral	MASRFAKVSEEENGNSIFYPSDLVNTKTTIPLRNRG*
Ga0126343_100010972	3300010035	Coral	MVRRFVKVSEEEIEEAFFYTSDLVYTKTAIPLSVGEERSI*
Ga0116699_10064872	3300013948	Coral Tissue	MARRFANVSEEEIVAINEAAFFYAYDLVNIKTTIPQGR*
Ga0116699_10146822	3300013948	Coral Tissue	MARRFAKVSKEEIEEAFFYPSDLVNTKTTIPLRVGEE
Ga0116699_10492162	3300013948	Coral Tissue	MARRFAEISEEEIEEESFYPSDLVNTKTTIPRRVGEEWWI*
Ga0116699_10759531	3300013948	Coral Tissue	LRTERKLARRFAKVSKEEIVATNKTASFYPSDLVNTKPITSLRVREERWIY
Ga0116699_10969291	3300013948	Coral Tissue	VSEEEIKTVFFYPSGLVNTKTTIPLRVGEERWIYSISNNSTVN*
Ga0215184_10064204	3300022595	Coral	MVHRFAKVSEEEIVAIYEAAFFYSSDLVNTKTTIPLRVGEER
Ga0215184_10374941	3300022595	Coral	MERRFAKVSEEEIVAINEAAFFYPSDLVNTKTTIPLRVGEERWI
Ga0215184_10470981	3300022595	Coral	MVRRFVKVSEEEIEEVFFFSPSDLENTKTTIPLRAGQERWIVVYCY
Ga0215184_10567751	3300022595	Coral	MARCFAKVSEEEIKEAFFYPSDLVNTKTTIPLRVG
Ga0215184_11022843	3300022595	Coral	MAQRFAKDSEEEIEEAFFYPFDLVNTKTTIPLSQFEID
Ga0215184_11200651	3300022595	Coral	MARHFVKVLEEIEEAFFYPSDLVNTKTTIPLRVGEERWINT
Ga0215184_11214511	3300022595	Coral	MARRFAKVSEEEIVASNEVAFFYPSDLVNTKTTIPLRVG
Ga0215184_11442001	3300022595	Coral	MACRFTEVLGEEMEEAFFYPSDLVNTKTTIPLGVSEERWIYTLHV
Ga0215184_11634781	3300022595	Coral	MARRVAKVSEEEIEEAFFYPSDLVNTKTTIPLRVGEER
Ga0215183_10495361	3300022596	Coral	MERKMGRRFTKVSEEEIEEAFFYPSDLVNTKTTIPQGR
Ga0215183_10569632	3300022596	Coral	MERKIARPFAKLLEEEIEEAFFYPSDLVNTKTTIPFRVGEERWIY
Ga0215183_10590701	3300022596	Coral	MARHFTKVSEEIVTINEAAFFYPSDLVNTKTTIPLRVGEE
Ga0215183_10620682	3300022596	Coral	MARRFAKVSEEEIEEAFFYPSDLVNTKTTIPFRVGEERWI
Ga0215183_10655561	3300022596	Coral	MVCCFAKVSEEKIEEAFFYPSDLVNTKTTIPLRVGEER
Ga0215183_10663173	3300022596	Coral	MARGFAKVSEEEIKTAFFYPADLVNTKRTIPLRVGEERWIY
Ga0215183_10784521	3300022596	Coral	MARRFAKVSEKETEEAFFYPSDLVNTKTTIPLRVGEERWI
Ga0215183_11070661	3300022596	Coral	MARCLVKVSEEEIVAINEVPFIYPSDLVNTKTTIP
Ga0215183_11091661	3300022596	Coral	MVRRFAKVSEEEIVAINEAAFFYPFDLVNTKTTIVQSQKADI
Ga0215183_11104943	3300022596	Coral	MARCFAKVSEEEIKEAFFYPSDLVNTKTTIPLRVGE
Ga0215183_11106842	3300022596	Coral	MVRRFAKVSEEEIEEAFFYPSDSVNTKTTIPLWVG
Ga0215183_11280921	3300022596	Coral	MARRFAKVSEQEIEEASFYPSDLVNTKTTIPLRVGEEW
Ga0215183_11543271	3300022596	Coral	VTRRFAKVSEEEIVAINEAAFFYLSDLVNTKTTIPLRVSEERWIY
Ga0215183_11571023	3300022596	Coral	MARRFAKVSGEEIEEAFFHPSDLVNTKTTIPLRVGEDRWI
Ga0215183_11649291	3300022596	Coral	FAKVSEEEIEEAFFYPSDLVNTKTTIPLGVGEEWWI
Ga0215183_11664552	3300022596	Coral	MVRRFAKVSEEEIKTAFFYPSDLVNTKTTIPLRVGEE
Ga0215183_11788081	3300022596	Coral	MACRFAKVSEDGIEEAFFYPPDLVNTKTTIPLRVGEERWIYTPTLRVS
Ga0215183_11796421	3300022596	Coral	MARPFTKVSEEEIEEGFFFYPSDLVNTKTTIPFRVGEEQWIYT
Ga0215183_11873771	3300022596	Coral	RCAKFSEEEIEEAFFYPSDLVNTETTNPLRIGEEW
Ga0215183_12199882	3300022596	Coral	MARRFAKVLEEEIEEAIFYPSELVNTKTTIPLRVGEEPWIYT
Ga0215183_12202011	3300022596	Coral	MARRFAKVSEEEIKTAFFYPSDLVNTKTTIPLRVGEER
Ga0215183_12205711	3300022596	Coral	MARRFTKVSEEEIKTAFFYPPDLVNTKTTIPLRVGEER
Ga0215185_10231731	3300022597	Coral	MAQRFAKDSEEEIEEAFFYPFDLVNTKTTIPLSRFEID
Ga0215185_10255541	3300022597	Coral	MARRFAKVSEEEIVAINETAFFYPSDLVKTKTIALRVGEE
Ga0215185_10373091	3300022597	Coral	MASRFAKVLEEEIEEAFFYPSDLVNTKTTIHLPFGG
Ga0215185_10409942	3300022597	Coral	MACHFANVSEEEIEEAFFYPSDLVNTKTTIPLRVGEE
Ga0215185_10431411	3300022597	Coral	MARRFAKVSEEEIKTTFFYPSDLVNTKTTIPLRVGEERWI
Ga0215185_10579602	3300022597	Coral	MVRRFAKVSEEEIKTAFFYPSDLVNTKTTIPLRVGEEWWIY
Ga0215185_10909793	3300022597	Coral	MARRFAKVSEEEIEEAFFYPSDLLNTKTTIPLRVGEERWIYTSTL
Ga0215185_11369202	3300022597	Coral	MACRFAKVSEDGIEEAFFYPPDLVNTKTTIPLRVGEERWIY
Ga0215185_11618621	3300022597	Coral	MARPFTKVSEEEIEEGFFFYPSDLVNTKTTIPFRVGEE
Ga0215185_11799191	3300022597	Coral	MERRFAKVSVEEIEEAFFYPSDLVNTKITIPLRVGEEWWVYTSTLRVSVY
Ga0215185_11828371	3300022597	Coral	MARRFAKVSAINGPAFFYPSDLVNTKTTIPLWVSE
Ga0215180_10140961	3300022598	Coral	MARRFAKVXEEEIVAINETAFFYPSDLVNTKTTIPLRVSEEQ
Ga0215180_10768593	3300022598	Coral	MAHRLAKVSEEEIEKAFFYPSDLVNTKITIPLRVGEEWWIYTSML
Ga0215180_10913061	3300022598	Coral	MARRFVKVSEEEIVAINEAAFFCPSDLVNTKTTIPLKVGEE
Ga0215180_11308661	3300022598	Coral	MERHFAKVSEEEIEKAFFYPSDLVNTKTSIPLRVSEERWIYTSTL
Ga0215180_12432143	3300022598	Coral	ARRFAKVSEEEIKTAFFYPSDLVNTKTTIPESVIT
Ga0215180_12494264	3300022598	Coral	MARGFAKVSEEEIEEAFFHPSDLVHTKTTIPLRVGE
Ga0215180_12702311	3300022598	Coral	MARRFAKVSEEEIKTAYFYPSDLVNTKTTIPLRVGDEWWIYIPRRFASW
Ga0215181_10157083	3300022599	Coral	MARGFAKVSEEEIKTAFFYPADLVNTKTTIPLRVGEEWWIYTSTLRVLV
Ga0215181_10203163	3300022599	Coral	MARRFAKVSEEEIVAINEAAFFYPSDLVNTKTTIP
Ga0215181_10254544	3300022599	Coral	MARGFAKVSEEEIEEAFFHPSDLVHTKTTIPLRVGEERW
Ga0215181_10468961	3300022599	Coral	MARYFAKVSEEQIEEAFFYPSDLVNTKTTIPLRVGEEW
Ga0215181_10533221	3300022599	Coral	RRFAKVSEEEIVAINEAAFFYPFDLVNTKTTIVQSQKADI
Ga0215181_10879351	3300022599	Coral	ARRFAKVSEEEIEEAFFYPSDLVNTKTTIRRNRNFLTS
Ga0215181_10924262	3300022599	Coral	MASRFAKVSEEEIEEAFFYPSDLVNNETAIPLRVGEE
Ga0215181_11283272	3300022599	Coral	MARRFAKVLEEEIEEAFFYPSDLVNTKTTIPLRVREEQWIYTSTLRVSV
Ga0215181_11479322	3300022599	Coral	MTRRFAKVSEEEIEQAFFYPSDLVNTKTTIPLRVGEERGIYTLTF
Ga0215182_10155592	3300022600	Coral	MARRFAKISEEEIRTAFFYPSDLVNTKTTTPLRVGEE
Ga0215182_10311925	3300022600	Coral	MARRFAKVLEEEIEEAFSYPSDLVNTKTTIPFRVGEERWIYTGTLFTIHLPFGG
Ga0215182_10665551	3300022600	Coral	MARRFAKVSEEEIKTTFFYPSDLVNTKTTIPLRVGEER
Ga0215182_10690191	3300022600	Coral	MARLFAKDIEEDIVAINEAAFFYPSDLVNTKTTIPPLFLKVVSNQGA
Ga0215182_10793742	3300022600	Coral	MASRFAKVSEEEIEEAFFYPSDLVNTETAIPLRVGEE
Ga0215182_11115151	3300022600	Coral	MVHRFAKSSEEEIKRASFYPSDLVNTKTTIPLRVGEE
Ga0215182_11866631	3300022600	Coral	MVHRFAKVSEEIVAINEATFFYPSDLVNTKATITVSVFRHL
Ga0255581_10057751	3300027103	Coral	MARRFAKVLEEEIEEAFFYPSDLVNTKTTIPLRVGEE
Ga0255581_10061236	3300027103	Coral	RKMARRFAKVSEEEIEEAFFYPSDLVNTKTTIPLRVGEER
Ga0255581_10102772	3300027103	Coral	MVHRFTKVSEEEIVAIYEAAFFYSSDLVNTKTTIPLRVGEER
Ga0255581_10132091	3300027103	Coral	MARRFAKVLEEEIEEAFSYPSDLVNTKTTIPFRVGEERWIYT
Ga0255581_10258793	3300027103	Coral	MARRFVRVSEDEIKIAFFYPSDLVNTKTTTPLRVGEE
Ga0255581_10695141	3300027103	Coral	MERRFAKVSVEEIEEAFFYPSDLVNTKITIPLRVGEEWWVYTSTLRI
Ga0255581_10749891	3300027103	Coral	MARRFAKVSEEEIEEAFFNPYDLVNTKTTIPLRVGEERWIYNSK
Ga0255581_10871122	3300027103	Coral	MARRFAKVSEEEIEEAFFYPSDLVKTKRTIPLRVGEYRWI
Ga0255581_10999961	3300027103	Coral	MARRLAKISEEEIKTAFFYPSDLVNTKTTIPLRVGGERWI
Ga0255581_11454081	3300027103	Coral	RRFAKVSEEEIEEAFFYPSDLVNTKTTVGEERWIYKHQKKTP
Ga0255581_11482971	3300027103	Coral	VRKMARRFAKVSEEEIEEAYPSDLVNTKTTIPLRVG
Ga0255581_11719311	3300027103	Coral	MARRFMKVSEEEIVAINEAAFFYPSDLVNTKTTIPLRV
Ga0255580_10024562	3300027264	Coral	MARRFAKVSEKEIVAISEAEFFYLSDLVNTKTTRVKSG
Ga0255580_10120901	3300027264	Coral	MARGFAKVLEEEIQEAFFYPSDLVNTKTTIPLRVGEE
Ga0255580_10137444	3300027264	Coral	MARRFAKVSEEEIVAINEAAFFYPSDLVNTKTTIPPMFLR
Ga0255580_10229631	3300027264	Coral	MARRFAKVSEEEIEEAFFNPYDLVNTKTTIPLRVGEER
Ga0255580_10237152	3300027264	Coral	MERKIARPFAKLLEEEIEEAFFYPSDLVNTKTTIPLRVREERLGTIHLPFGG
Ga0255580_10253421	3300027264	Coral	MARRFAKVSEEEIVAINEAAFFYPSDLVNTKTTIPLR
Ga0255580_11273141	3300027264	Coral	MARRFAKVSEGEIEEAFFYSFDLVNTKTTIPLRVVE
Ga0255580_11680251	3300027264	Coral	MARRFAKVLEEEIEEAFFYPSDLVNTKTTIPLRVSEE
Ga0255580_11700561	3300027264	Coral	MERRFAKVSEEEIVAINEAAFFYPSDLVNTKTTIPLRVGEERW
Ga0255582_10011805	3300027507	Coral	MARRFAKVSEEEIVAINEAAFFYPSDLVNTKTTIHLRVGEERWIYILTILFXM
Ga0255582_10020504	3300027507	Coral	MERKIARPFAKLLEEEIEEAFFYPSDLVNTKTTIP
Ga0255582_10178091	3300027507	Coral	MARGFAKVLEEEIQEAFFYPSDLVNTKTTIPLRVGEERWIYTSTL
Ga0255582_10237362	3300027507	Coral	MARRFAKISEEEIRTAFFYPSDLVNTKTTTPLRVGEERWIYN
Ga0255582_10260683	3300027507	Coral	MACRFTKVLGEEMEEAFFYPSDLVNTKTTIPLGVSEERWIYTSTLH
Ga0255582_10452711	3300027507	Coral	MARRFAKVLEEEIEEAFFYPSDLVNTKTTIPFRVGEERWIYTSTL
Ga0255582_10512661	3300027507	Coral	TVLRTERKMARRFAKVSEEEIEEAFFYPSDLVNTETAIPLRVGEE
Ga0255582_10591953	3300027507	Coral	MARCFAKVLEEEIQEAFFYPSDLVNTKTTIPLSVGEERWIYTSTLRGIVV
Ga0255582_10641793	3300027507	Coral	MARRFAKVSEEEIVAIDEAAFFYPSDLVNTKTTIPLRVSKERWVYTFTLRVSV
Ga0255582_10744531	3300027507	Coral	MARRFAKVLEEEIEEAFFYPSDLVNTKTTIPLRVGEERWI
Ga0255582_10786761	3300027507	Coral	MTHRFAEVSEEEIEEVFVYPSDLVNTKTTIPLRVG
Ga0255582_10856591	3300027507	Coral	MARRFAKVSEEEIVAINEAAFFYPSDLVNTKTTISLRVGEER
Ga0255582_10878421	3300027507	Coral	MARRFAKVLEEEIEEAFFYPSDLVNTKTTIPVRVGEERW
Ga0255582_11104031	3300027507	Coral	MARCFAKVSEEEIKTAFFYPSDLVNTKTTIPLREGG
Ga0255582_11435541	3300027507	Coral	MARRFAKVFEDEIEETFVYPSDLVNTKTTIPLRVGEER
Ga0255582_11766581	3300027507	Coral	MARCSAKGSEEEIEEEFFYPSDLLNTKTTIPLRVGEEPWIYTS
Ga0255582_12323332	3300027507	Coral	VKVSEEEIVAINETAFFYPSDLVNTKTTIPLRVGEERWIY
Ga0255582_12342381	3300027507	Coral	MACRFAKVSEDGIEEAFFYPPDLVNTKTTIPLRVGEERWIYTPTLRV