Metagenome Family F084978

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084978
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	46 residues
Representative Sequence	MARTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPLKSYGGAISMI
Number of Associated Samples	60
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.10 %
% of genes near scaffold ends (potentially truncated)	95.50 %
% of genes from short scaffolds (< 2000 bps)	97.30 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (89.189 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.144 % of family members)
Environment Ontology (ENVO)	Unclassified (79.279 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.856 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.74% β-sheet: 0.00% Coil/Unstructured: 55.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF06411	HdeA	8.11
PF13192	Thioredoxin_3	2.70
PF07045	DUF1330	1.80
PF11159	DUF2939	0.90
PF04392	ABC_sub_bind	0.90
PF02657	SufE	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.80
COG2166	Sulfur transfer protein SufE, Fe-S cluster assembly	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
All Organisms	root	All Organisms	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
cellular organisms	root	All Organisms → cellular organisms	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.41 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.41 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1025201	Not Available	1111	Open in IMG/M
3300005332\|Ga0066388_103241997	Not Available	831	Open in IMG/M
3300005332\|Ga0066388_106366521	Not Available	595	Open in IMG/M
3300005764\|Ga0066903_105917850	Not Available	641	Open in IMG/M
3300005764\|Ga0066903_108721952	Not Available	515	Open in IMG/M
3300005764\|Ga0066903_108778027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300005764\|Ga0066903_108888771	Not Available	509	Open in IMG/M
3300010046\|Ga0126384_12033656	Not Available	550	Open in IMG/M
3300010376\|Ga0126381_101150792	Not Available	1121	Open in IMG/M
3300010376\|Ga0126381_101471080	Not Available	984	Open in IMG/M
3300010376\|Ga0126381_103007327	Not Available	670	Open in IMG/M
3300010868\|Ga0124844_1008459	Not Available	2351	Open in IMG/M
3300010868\|Ga0124844_1049516	Not Available	1469	Open in IMG/M
3300012971\|Ga0126369_10756102	Not Available	1052	Open in IMG/M
3300016270\|Ga0182036_10481115	Not Available	981	Open in IMG/M
3300016270\|Ga0182036_11350595	Not Available	596	Open in IMG/M
3300016294\|Ga0182041_10542835	Not Available	1014	Open in IMG/M
3300016294\|Ga0182041_10928828	Not Available	784	Open in IMG/M
3300016294\|Ga0182041_12301461	Not Available	504	Open in IMG/M
3300016341\|Ga0182035_11124444	Not Available	700	Open in IMG/M
3300016341\|Ga0182035_11282763	Not Available	655	Open in IMG/M
3300016341\|Ga0182035_12107248	Not Available	512	Open in IMG/M
3300016357\|Ga0182032_10317227	Not Available	1236	Open in IMG/M
3300016371\|Ga0182034_10769456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300016371\|Ga0182034_11864727	Not Available	530	Open in IMG/M
3300016371\|Ga0182034_11927716	Not Available	522	Open in IMG/M
3300016387\|Ga0182040_10176471	Not Available	1549	Open in IMG/M
3300016387\|Ga0182040_10911781	Not Available	729	Open in IMG/M
3300016387\|Ga0182040_11279139	Not Available	619	Open in IMG/M
3300016387\|Ga0182040_11675517	Not Available	543	Open in IMG/M
3300016404\|Ga0182037_10390558	Not Available	1144	Open in IMG/M
3300016422\|Ga0182039_10637227	Not Available	935	Open in IMG/M
3300016422\|Ga0182039_12211575	Not Available	507	Open in IMG/M
3300016445\|Ga0182038_10603975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300017961\|Ga0187778_10536632	Not Available	779	Open in IMG/M
3300021560\|Ga0126371_10316795	Not Available	1690	Open in IMG/M
3300021560\|Ga0126371_11000497	Not Available	978	Open in IMG/M
3300021560\|Ga0126371_11734110	Not Available	748	Open in IMG/M
3300021560\|Ga0126371_12061640	Not Available	687	Open in IMG/M
3300021560\|Ga0126371_13345242	Not Available	542	Open in IMG/M
3300026910\|Ga0207840_1020227	Not Available	662	Open in IMG/M
3300027014\|Ga0207815_1004913	Not Available	1833	Open in IMG/M
3300027703\|Ga0207862_1163705	Not Available	664	Open in IMG/M
3300031545\|Ga0318541_10247633	Not Available	990	Open in IMG/M
3300031545\|Ga0318541_10428972	Not Available	739	Open in IMG/M
3300031549\|Ga0318571_10046053	Not Available	1282	Open in IMG/M
3300031549\|Ga0318571_10055692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1192	Open in IMG/M
3300031564\|Ga0318573_10163997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1169	Open in IMG/M
3300031573\|Ga0310915_11099869	Not Available	552	Open in IMG/M
3300031668\|Ga0318542_10177567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1067	Open in IMG/M
3300031668\|Ga0318542_10741018	Not Available	514	Open in IMG/M
3300031719\|Ga0306917_10277097	Not Available	1291	Open in IMG/M
3300031719\|Ga0306917_10387175	Not Available	1090	Open in IMG/M
3300031719\|Ga0306917_11279189	Not Available	568	Open in IMG/M
3300031719\|Ga0306917_11309361	Not Available	560	Open in IMG/M
3300031724\|Ga0318500_10109976	Not Available	1263	Open in IMG/M
3300031736\|Ga0318501_10657059	Not Available	577	Open in IMG/M
3300031744\|Ga0306918_10418525	Not Available	1045	Open in IMG/M
3300031748\|Ga0318492_10538466	Not Available	621	Open in IMG/M
3300031751\|Ga0318494_10184807	Not Available	1183	Open in IMG/M
3300031768\|Ga0318509_10835673	Not Available	509	Open in IMG/M
3300031781\|Ga0318547_10217307	Not Available	1146	Open in IMG/M
3300031781\|Ga0318547_10650986	Not Available	654	Open in IMG/M
3300031798\|Ga0318523_10391580	Not Available	691	Open in IMG/M
3300031821\|Ga0318567_10156145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1263	Open in IMG/M
3300031832\|Ga0318499_10276219	Not Available	651	Open in IMG/M
3300031833\|Ga0310917_10228197	Not Available	1250	Open in IMG/M
3300031833\|Ga0310917_10664596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300031833\|Ga0310917_10769881	Not Available	650	Open in IMG/M
3300031833\|Ga0310917_10777828	Not Available	647	Open in IMG/M
3300031859\|Ga0318527_10169617	Not Available	919	Open in IMG/M
3300031879\|Ga0306919_10973548	Not Available	649	Open in IMG/M
3300031890\|Ga0306925_10669101	Not Available	1089	Open in IMG/M
3300031890\|Ga0306925_11550714	Not Available	646	Open in IMG/M
3300031890\|Ga0306925_12026472	Not Available	542	Open in IMG/M
3300031897\|Ga0318520_10146322	Not Available	1366	Open in IMG/M
3300031897\|Ga0318520_10804299	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031910\|Ga0306923_10217044	Not Available	2188	Open in IMG/M
3300031910\|Ga0306923_10543919	Not Available	1309	Open in IMG/M
3300031910\|Ga0306923_11407353	Not Available	734	Open in IMG/M
3300031912\|Ga0306921_10315401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1830	Open in IMG/M
3300031912\|Ga0306921_11869915	Not Available	643	Open in IMG/M
3300031941\|Ga0310912_10046614	Not Available	3030	Open in IMG/M
3300031942\|Ga0310916_11100457	Not Available	660	Open in IMG/M
3300031945\|Ga0310913_10373714	Not Available	1010	Open in IMG/M
3300031945\|Ga0310913_10559402	Not Available	812	Open in IMG/M
3300031945\|Ga0310913_10998175	Not Available	587	Open in IMG/M
3300031945\|Ga0310913_11188861	Not Available	531	Open in IMG/M
3300031946\|Ga0310910_11145736	Not Available	604	Open in IMG/M
3300031947\|Ga0310909_10386515	Not Available	1175	Open in IMG/M
3300031947\|Ga0310909_10417598	Not Available	1126	Open in IMG/M
3300031947\|Ga0310909_10727111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	823	Open in IMG/M
3300031947\|Ga0310909_11498485	Not Available	537	Open in IMG/M
3300032001\|Ga0306922_11307078	Not Available	733	Open in IMG/M
3300032035\|Ga0310911_10260765	Not Available	993	Open in IMG/M
3300032035\|Ga0310911_10657277	Not Available	608	Open in IMG/M
3300032035\|Ga0310911_10839733	Not Available	530	Open in IMG/M
3300032042\|Ga0318545_10184801	Not Available	745	Open in IMG/M
3300032044\|Ga0318558_10226759	Not Available	916	Open in IMG/M
3300032059\|Ga0318533_10303309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1159	Open in IMG/M
3300032059\|Ga0318533_10537630	Not Available	857	Open in IMG/M
3300032060\|Ga0318505_10099241	Not Available	1317	Open in IMG/M
3300032063\|Ga0318504_10665178	Not Available	501	Open in IMG/M
3300032067\|Ga0318524_10278028	Not Available	864	Open in IMG/M
3300032076\|Ga0306924_10265239	Not Available	1972	Open in IMG/M
3300032076\|Ga0306924_12361037	Not Available	537	Open in IMG/M
3300032076\|Ga0306924_12522199	Not Available	515	Open in IMG/M
3300032261\|Ga0306920_100841577	Not Available	1344	Open in IMG/M
3300033289\|Ga0310914_11159312	Not Available	674	Open in IMG/M
3300033289\|Ga0310914_11535936	Not Available	569	Open in IMG/M
3300033289\|Ga0310914_11868607	Not Available	505	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.19%
Loam	Environmental → Terrestrial → Soil → Loam	9.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	80.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.01%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.01%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026910	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10252013	3300000655	Forest Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERTPLKSYG
Ga0066388_1032419973	3300005332	Tropical Forest Soil	MRTIILAWVIGFLGLVMIVGGIWGVIDLYRQTERFPLKSYGGAISMICGGVAMLG
Ga0066388_1063665211	3300005332	Tropical Forest Soil	MRTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPLKSYGGAISMICGGV
Ga0066903_1059178501	3300005764	Tropical Forest Soil	MRTFILSWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGAISM
Ga0066903_1087219522	3300005764	Tropical Forest Soil	MRSFILAWVIGLLGLIMIADGIWGVVDLYRQEVRAPLKSYGGAVSMICGGVAM
Ga0066903_1087780272	3300005764	Tropical Forest Soil	MARTLILSWLTGVLGLIMIGGGIWGLIDLFRQEVRAPLKSYGGGVSM
Ga0066903_1088887712	3300005764	Tropical Forest Soil	MRTFILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGA
Ga0126384_120336562	3300010046	Tropical Forest Soil	MARTIILAWVIGVLGLVMIGGGIWGVVDLYRQTVRAPL
Ga0126381_1011507924	3300010376	Tropical Forest Soil	MVRTVILAWVIGVMSIVMIGVGIAGVLDLYRQTEQAP
Ga0126381_1014710801	3300010376	Tropical Forest Soil	MARTFILAWVIAVLGLVMIVSGIGGVVGLYRQTERAPLKSYGGAIS
Ga0126381_1030073271	3300010376	Tropical Forest Soil	MARTFILAWVIAVLGLVMIVSGIGGVVGLYRQTERAPLKSYGG
Ga0124844_10084591	3300010868	Tropical Forest Soil	MARTIILAWVIGVLGLVMIGGGIWGVVDLYRQTVRAPLKSYVAGQFA
Ga0124844_10495163	3300010868	Tropical Forest Soil	MARTIILAWVIGVLGLVMIGGGIWGVVDLYRQTVRAPLKSYGGAICM
Ga0126369_107561022	3300012971	Tropical Forest Soil	MARTFILAWVIAVLGVVMIVSGIGGVVGLYRQIERAPLK
Ga0182036_104811152	3300016270	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERAPL
Ga0182036_113505952	3300016270	Soil	MARTFILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGEAKLGAT
Ga0182041_105428351	3300016294	Soil	MARTIILAWVIGLLGLVMIGGGIWGLIDLFRQEVRAPLKSYGGAVSMICGGVAMLGVAQ
Ga0182041_109288281	3300016294	Soil	MRTFILAWVIGVLGLVMIGGGIWGIVDLFRQEVRAPLKSYGGAVSMICGGVAMLGVAQ
Ga0182041_123014612	3300016294	Soil	MARTIILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPL
Ga0182035_111244442	3300016341	Soil	MARTFILAWVIGLLGLILIGGGIWGVVDLFRQEVRPLKSYGEAKLAAT
Ga0182035_112827631	3300016341	Soil	MRTFILAWVIGVLGLVMIGGGIWGIVDLFRQEVRAPLKS
Ga0182035_121072481	3300016341	Soil	MARTYILAWVIGLLGLVMIGGGIWGVVDLYKQEVRATLRSYGGAVSMICGGVAMLGLAQ
Ga0182032_103172272	3300016357	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGG
Ga0182034_107694561	3300016371	Soil	MRTFILAWVIGLLGLAMIGGGIWGVIDLYRQEVRAPLKSYGGAISMICGGVAMLGL
Ga0182034_118647271	3300016371	Soil	MRTLILAWLIGLLGLIMIGGGIWGVIDLLRQAVRA
Ga0182034_119277161	3300016371	Soil	MARTIILAWLIVLLGLIMIGGGIWGLIDLFRQEVRAPLKSYG
Ga0182040_101764715	3300016387	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPL
Ga0182040_109117812	3300016387	Soil	MRTFILAWVIGVLGLVMIGGGIWGIVDLFRQEVRAPLKSYGGAV
Ga0182040_112791391	3300016387	Soil	MRTLILAWLIGLLGLIMIGGGIWGVIDLLRQAVRAPLKSYGGAVSMICGGVAMLGVAQ
Ga0182040_116755172	3300016387	Soil	MRTFILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGAISMICGGV
Ga0182037_103905581	3300016404	Soil	MRTFILAWVIGVLGLVMIGGGIWGIVDLFRQEVRAPLKSYGGAVSMICGGVAMLGVA
Ga0182039_106372271	3300016422	Soil	MARSLILAWVIVLLGLVMIGGGTWGVIDLYRQEVRAPLKSYGG
Ga0182039_122115752	3300016422	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAVSMVCGGVAMLGLA
Ga0182038_106039751	3300016445	Soil	MARTFILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAISMICGGVVGRDA
Ga0187778_105366321	3300017961	Tropical Peatland	MGRTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERAPVK
Ga0126371_103167951	3300021560	Tropical Forest Soil	MARTFILAWVIAVLGLVMIVSGIGGVVGLYRQTERAPLKSY
Ga0126371_110004972	3300021560	Tropical Forest Soil	MARTFILAWVIAVLGLVMIVSGIGGVVGLYRQTERAPLKSYG
Ga0126371_117341101	3300021560	Tropical Forest Soil	MARTFILAWVMAVLGLIMFLWGISGAYEQYRQTERAPSYGGAVAMI
Ga0126371_120616401	3300021560	Tropical Forest Soil	MRSFILAWVIGLLGLIMIAGGIWGMVDLFRQAARAPLKSY
Ga0126371_133452421	3300021560	Tropical Forest Soil	MRTFILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGAISMIC
Ga0207840_10202272	3300026910	Tropical Forest Soil	MARTFILAWVIGLLGLIMIGGGIWGVIDLFRQEVRAPLKAYGGAIS
Ga0207815_10049132	3300027014	Tropical Forest Soil	MARTFILAWVIGLLGLIMIGGGIWGVIDLFRQEVRAPLKSYGGAISMICGG
Ga0207862_11637051	3300027703	Tropical Forest Soil	MRTLILAWVIGLLGLIMIVGGIWGVIDLFRQAVRAPLKSYGG
Ga0318541_102476333	3300031545	Soil	MTRTIILAWVIGVLGLVMIGGGIWGVIDLYRQEAR
Ga0318541_104289721	3300031545	Soil	MARSLILAWVIVLLGLVMIGGGTWGVIDLYRQEVRAPLK
Ga0318571_100460531	3300031549	Soil	MRTFILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGAISMICGGVVGHD
Ga0318571_100556921	3300031549	Soil	MRTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPLKSYGGAISMISGGVA
Ga0318573_101639971	3300031564	Soil	MRTFILAWVIGLLGLAMIGGGIWGVIDLYRQEVRAPLKSYGGAISMICGGVAMLGLA
Ga0310915_110998692	3300031573	Soil	MARTFILAWVIGLLGLVMIGGGIWGVIDLFRQEVRPLKSYGEAKLAAT
Ga0318542_101775671	3300031668	Soil	MRTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPLKSYGGAISMICGGVAMLGLA
Ga0318542_107410181	3300031668	Soil	MARTFILAWVIGVLGLVMIGGGIWGIVDLYRQTERAPLKSYGGA
Ga0306917_102770973	3300031719	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAVSMICGGVAMLGVM
Ga0306917_103871753	3300031719	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERAPLKSYGGAIC
Ga0306917_112791892	3300031719	Soil	MARTIILAWVIGLLGLVMIGGGIWGLIDLFRQEVRAPLKSYGGAVSI
Ga0306917_113093611	3300031719	Soil	MARTIILAWVIGLLGLVMIGGGIWGLIDLFRQEVRAPLK
Ga0318500_101099762	3300031724	Soil	MRTFILAWVIGLLGLVMIAGGIWGIIDLFRQEVRAP
Ga0318501_106570591	3300031736	Soil	MARTIILAWLIVLLGLIMIGGGIWGLIDLFRQEVRAPLKSYGGAVSMI
Ga0306918_104185253	3300031744	Soil	MARSLILAWVIVLLGLVMIGGGTWGVIDLYRQEVRAPLKSYGGAISMLCG
Ga0318492_105384662	3300031748	Soil	MARTFILAWVIGVLGLVMIGGGIWGIVDLYRQTERAPLKSYGGAISMICGGVA
Ga0318494_101848072	3300031751	Soil	MRTFILAWVIGLLGLIMIAGGIWGVIDLFRQEVRAPLKSYGGAVSM
Ga0318509_108356731	3300031768	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAVSMICGGVA
Ga0318547_102173073	3300031781	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAVSHDMRRR
Ga0318547_106509861	3300031781	Soil	MARTVILAWVIGVLSIVMIGVGIAEVLDLYRQTERAPLK
Ga0318523_103915801	3300031798	Soil	MARTIILAWLIVLLGLIMIGGGIWGLIDLFRQEVRAPLKSYGGAISMMHQSPKRG
Ga0318567_101561452	3300031821	Soil	MRTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPL
Ga0318499_102762191	3300031832	Soil	MARTFILAWVIGLLGLIMIGGGIWGVIDLFRQEVRAPLKAY
Ga0310917_102281973	3300031833	Soil	MRTFILAWVIGLLGLIMIAGGIWGVVDLYRQEVRAPLKSYGGAVSMICGGVAM
Ga0310917_106645961	3300031833	Soil	MARTFILAWVIGLLGLIMIASGIWGVVDLYRQEVRAPL
Ga0310917_107698811	3300031833	Soil	MARTIILAWVIGFLGLVMIVGGIWGVIDLYRQEVR
Ga0310917_107778281	3300031833	Soil	MRTFILAWVIGVLGLVMIGGGIWGIVDLFRQEVRAPLKSYGGAVSMICGGVAMLGV
Ga0318527_101696173	3300031859	Soil	MVRTVILAWVIGVLSIVMIGVGIAGVLDLYRQTEQAPLKSYGG
Ga0306919_109735482	3300031879	Soil	MRTLILYWLIGLLGLIMIAGGIWGVIDLFRQTVRAP
Ga0306925_106691013	3300031890	Soil	MTRTIILAWVIGVLGLVMIGGGIWGVIDLYRQEARAPLKSYGGAISM
Ga0306925_115507141	3300031890	Soil	MARTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPLK
Ga0306925_120264722	3300031890	Soil	MARTFILAWVIGVLGLVMIVSGIGGVVSLYRQTERAPLGSYGGAI
Ga0318520_101463224	3300031897	Soil	MRTFILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGAISMICG
Ga0318520_108042992	3300031897	Soil	MARTFILAWVIGLLGLVMIGGGIWGVIDLFRQEVRPLKSY
Ga0306923_102170444	3300031910	Soil	MRTFILAWVIGVLGLIMIAGGSWGVIDLFRQEVRAPLKSYGGAVSMVCGGF
Ga0306923_105439191	3300031910	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERAPLKKIL
Ga0306923_114073532	3300031910	Soil	MRTFILAWVIGVLGLVMIGGGIWGVIDLFRQEVRAPLKSYGG
Ga0306921_103154013	3300031912	Soil	MARTFILAWVIGLLGLIMIASGIWGVVDLYRQEVRAPLKSYGGAVSMICGGVAML
Ga0306921_118699151	3300031912	Soil	MARTFILAWVIGVLGLVMIGGGIWGIVDLYRQTERAPLKSYG
Ga0310912_100466148	3300031941	Soil	MARTFILAWVIGVLGLVMIGGGIWGIVDLYRQTERAPLKSYGGAISMICGGV
Ga0310916_111004571	3300031942	Soil	MARTFILAWVIGLLGLIMIGGGIWGVIDLFRQEVRAPLKAYGGA
Ga0310913_103737142	3300031945	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERAPLKKILWRGDLH
Ga0310913_105594021	3300031945	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVR
Ga0310913_109981751	3300031945	Soil	MTRTIILAWVIGVLGLVMIGGGIWGLIDLFRQEVRAP
Ga0310913_111888611	3300031945	Soil	MRTFILAWLIGLLGLVMIAGGIWGVIDLFRQTVRAPLKSYGGAFSMICGGV
Ga0310910_111457361	3300031946	Soil	MARTIILAWVIGLLGLVMIGGGIWGLIDLFRQEVRAPLKSYGGAVS
Ga0310909_103865151	3300031947	Soil	MARTIILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGAVS
Ga0310909_104175983	3300031947	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAVSMIC
Ga0310909_107271112	3300031947	Soil	MRTFILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGG
Ga0310909_114984851	3300031947	Soil	MARTIILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLK
Ga0306922_113070781	3300032001	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAVSMVCGGVAML
Ga0310911_102607652	3300032035	Soil	MRTFILAWVIGLLGLIMIAGGIWGVVDLYRQEVRAPLKSYGGAVSMICGGVAMLGV
Ga0310911_106572771	3300032035	Soil	MARTIILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGA
Ga0310911_108397332	3300032035	Soil	MARTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPLKSYGGAISMI
Ga0318545_101848012	3300032042	Soil	MARTIILAWVIGLLGLVMIGGGIWGLIDLFRQEVRAPLKSYGGAISMMHQSPKRG
Ga0318558_102267591	3300032044	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERAPLKKILWRGDLHDMWRRCRVGRGA
Ga0318533_103033091	3300032059	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERA
Ga0318533_105376302	3300032059	Soil	MARTYILAWVIGLLGLVMIGGGIWGVIDLFRQEVRAPLKSYGGAVSHDMRRRC
Ga0318505_100992411	3300032060	Soil	MARTIILAWLIVLLGLIMIGGGIWGLIDLFRQEVRAPLKSY
Ga0318504_106651781	3300032063	Soil	MRTFILAWVIGLLGLIMIAGGIWGVVDLYRQEARAPLKSYGGAVSMICGGVA
Ga0318524_102780283	3300032067	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTEQAPLKSYGGAICMICGGVVG
Ga0306924_102652394	3300032076	Soil	MARTIILAWVIGLLGLVMIGGGIWGLIDLFRQEVRAPLKSYGGA
Ga0306924_123610372	3300032076	Soil	MARTIILAWVIGFLGLVMIVGGIWGVIDLYRQEVRAPLKSYGGAISMICGGVAMLG
Ga0306924_125221992	3300032076	Soil	MARTIILAWVIGVLGLVMITSGFWGLFDLFKQEVRAPLKSYGGP
Ga0306920_1008415771	3300032261	Soil	MARTVILAWVIGVLSIVMIGVGIAGVLDLYRQTERAPLKKILW
Ga0310914_111593121	3300033289	Soil	MARTFILAWVIGLLGLVMIGGGIWGVIDLYRQEVRAPLKSYGGAISMICGGVA
Ga0310914_115359361	3300033289	Soil	MRTFILAWVIGLLGLIMIAGGIWGVVDLYRQEVRAPLKSYGGAVSMI
Ga0310914_118686071	3300033289	Soil	MRTLILYWLIGLLGLIMIAGGIWGVIDLFRQTVRAPLKSY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084978

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences