Metagenome Family F084929

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084929
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	38 residues
Representative Sequence	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLR
Number of Associated Samples	35
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.00 %
% of genes near scaffold ends (potentially truncated)	86.49 %
% of genes from short scaffolds (< 2000 bps)	61.26 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.676 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water (91.892 % of family members)
Environment Ontology (ENVO)	Unclassified (91.892 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (91.892 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00078	RVT_1	2.70
PF00411	Ribosomal_S11	0.90
PF02146	SIR2	0.90
PF02493	MORN	0.90
PF13558	SbcC_Walker_B	0.90
PF00075	RNase_H	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0100	Ribosomal protein S11	Translation, ribosomal structure and biogenesis [J]	0.90
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	Defense mechanisms [V]	0.90
COG4642	Uncharacterized conserved protein	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
All Organisms	root	All Organisms	24.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
cellular organisms	root	All Organisms → cellular organisms	24.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	24.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	23.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	23.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	22.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Chlorophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae	22.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
CS clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade	22.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Chlamydomonadales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	22.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Dunaliellaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae	20.72 %
Volvocaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae	0.90 %
Chlamydomonadaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Dunaliella	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella	20.72 %
Chlamydomonas	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas	0.90 %
Volvox	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Volvox	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.68 %
Dunaliella tertiolecta	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	15.32 %
Dunaliella viridis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	5.41 %
Chlamydomonas chlamydogama	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas chlamydogama	0.90 %
Volvox reticuliferus	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Volvox → Volvox reticuliferus	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300012027\|Ga0136609_1022950	Not Available	585	Open in IMG/M
3300012027\|Ga0136609_1032040	Not Available	501	Open in IMG/M
3300012028\|Ga0136584_1019519	Not Available	655	Open in IMG/M
3300012114\|Ga0136595_1032233	Not Available	511	Open in IMG/M
3300012121\|Ga0136565_1033544	Not Available	555	Open in IMG/M
3300012265\|Ga0136603_1013472	Not Available	906	Open in IMG/M
3300012265\|Ga0136603_1021086	Not Available	733	Open in IMG/M
3300012265\|Ga0136603_1030506	Not Available	624	Open in IMG/M
3300028339\|Ga0306916_111128	Not Available	613	Open in IMG/M
3300031209\|Ga0307955_1043190	Not Available	853	Open in IMG/M
3300031209\|Ga0307955_1050198	Not Available	781	Open in IMG/M
3300031210\|Ga0307964_1085052	Not Available	587	Open in IMG/M
3300031210\|Ga0307964_1108285	Not Available	511	Open in IMG/M
3300031211\|Ga0307974_1002828	All Organisms → cellular organisms → Eukaryota	12406	Open in IMG/M
3300031211\|Ga0307974_1006854	Not Available	7973	Open in IMG/M
3300031211\|Ga0307974_1009485	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Volvox → Volvox reticuliferus	6552	Open in IMG/M
3300031211\|Ga0307974_1012422	Not Available	5502	Open in IMG/M
3300031211\|Ga0307974_1022805	Not Available	3551	Open in IMG/M
3300031211\|Ga0307974_1062071	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	1645	Open in IMG/M
3300031211\|Ga0307974_1073646	Not Available	1426	Open in IMG/M
3300031211\|Ga0307974_1097287	Not Available	1117	Open in IMG/M
3300031212\|Ga0307959_1145323	Not Available	579	Open in IMG/M
3300031218\|Ga0307976_1057014	Not Available	862	Open in IMG/M
3300031221\|Ga0307948_1000883	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	20622	Open in IMG/M
3300031221\|Ga0307948_1004810	Not Available	9952	Open in IMG/M
3300031221\|Ga0307948_1007364	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	7969	Open in IMG/M
3300031221\|Ga0307948_1012471	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	5842	Open in IMG/M
3300031221\|Ga0307948_1014719	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	5204	Open in IMG/M
3300031221\|Ga0307948_1019124	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	4316	Open in IMG/M
3300031222\|Ga0307972_1022793	Not Available	3525	Open in IMG/M
3300031222\|Ga0307972_1033703	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	2809	Open in IMG/M
3300031222\|Ga0307972_1047044	Not Available	2242	Open in IMG/M
3300031222\|Ga0307972_1192863	Not Available	594	Open in IMG/M
3300031225\|Ga0307942_1000951	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	22121	Open in IMG/M
3300031225\|Ga0307942_1008567	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	7496	Open in IMG/M
3300031225\|Ga0307942_1012748	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	5597	Open in IMG/M
3300031225\|Ga0307942_1183449	Not Available	553	Open in IMG/M
3300031243\|Ga0307970_1035960	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	1140	Open in IMG/M
3300031333\|Ga0307936_1014471	Not Available	2402	Open in IMG/M
3300031333\|Ga0307936_1039233	Not Available	1401	Open in IMG/M
3300031333\|Ga0307936_1125971	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	707	Open in IMG/M
3300031334\|Ga0307969_1065691	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	883	Open in IMG/M
3300031334\|Ga0307969_1084757	Not Available	754	Open in IMG/M
3300031334\|Ga0307969_1085470	Not Available	750	Open in IMG/M
3300031334\|Ga0307969_1107392	Not Available	647	Open in IMG/M
3300031335\|Ga0307951_1022849	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	3276	Open in IMG/M
3300031335\|Ga0307951_1106298	Not Available	706	Open in IMG/M
3300031339\|Ga0307932_1074071	Not Available	904	Open in IMG/M
3300031343\|Ga0307952_1044157	Not Available	1820	Open in IMG/M
3300031343\|Ga0307952_1089564	Not Available	995	Open in IMG/M
3300031382\|Ga0307971_1136377	Not Available	716	Open in IMG/M
3300031382\|Ga0307971_1170841	Not Available	615	Open in IMG/M
3300031382\|Ga0307971_1171292	Not Available	614	Open in IMG/M
3300031382\|Ga0307971_1175413	Not Available	604	Open in IMG/M
3300031382\|Ga0307971_1199306	Not Available	554	Open in IMG/M
3300031387\|Ga0307947_1030415	Not Available	2313	Open in IMG/M
3300031391\|Ga0307954_1054646	Not Available	1402	Open in IMG/M
3300031391\|Ga0307954_1065611	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	1211	Open in IMG/M
3300031391\|Ga0307954_1070136	Not Available	1146	Open in IMG/M
3300031391\|Ga0307954_1084400	Not Available	971	Open in IMG/M
3300031392\|Ga0307975_1011850	Not Available	3203	Open in IMG/M
3300031392\|Ga0307975_1084126	Not Available	1195	Open in IMG/M
3300031392\|Ga0307975_1090992	Not Available	1136	Open in IMG/M
3300031392\|Ga0307975_1174756	Not Available	689	Open in IMG/M
3300031392\|Ga0307975_1200867	Not Available	608	Open in IMG/M
3300031392\|Ga0307975_1201998	Not Available	605	Open in IMG/M
3300031392\|Ga0307975_1240381	Not Available	513	Open in IMG/M
3300031393\|Ga0307967_1115527	Not Available	932	Open in IMG/M
3300031393\|Ga0307967_1196229	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	569	Open in IMG/M
3300031394\|Ga0307963_1002762	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	13891	Open in IMG/M
3300031394\|Ga0307963_1022083	Not Available	3535	Open in IMG/M
3300031395\|Ga0307957_1029150	Not Available	1207	Open in IMG/M
3300031395\|Ga0307957_1034696	Not Available	1092	Open in IMG/M
3300031395\|Ga0307957_1078388	Not Available	685	Open in IMG/M
3300031396\|Ga0307944_1014654	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	2089	Open in IMG/M
3300031396\|Ga0307944_1032039	Not Available	1419	Open in IMG/M
3300031396\|Ga0307944_1050639	Not Available	1124	Open in IMG/M
3300031396\|Ga0307944_1162830	Not Available	552	Open in IMG/M
3300031397\|Ga0307960_1007393	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	6754	Open in IMG/M
3300031397\|Ga0307960_1009210	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	5979	Open in IMG/M
3300031397\|Ga0307960_1031650	Not Available	2570	Open in IMG/M
3300031397\|Ga0307960_1076085	Not Available	1172	Open in IMG/M
3300031397\|Ga0307960_1141226	Not Available	667	Open in IMG/M
3300031399\|Ga0307968_1021923	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3282	Open in IMG/M
3300031399\|Ga0307968_1125277	Not Available	698	Open in IMG/M
3300031600\|Ga0307930_1124689	Not Available	817	Open in IMG/M
3300031600\|Ga0307930_1156972	Not Available	692	Open in IMG/M
3300031600\|Ga0307930_1229119	Not Available	519	Open in IMG/M
3300031607\|Ga0307966_1004163	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	10788	Open in IMG/M
3300031607\|Ga0307966_1024628	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	4030	Open in IMG/M
3300031607\|Ga0307966_1143582	Not Available	1089	Open in IMG/M
3300031607\|Ga0307966_1271549	Not Available	628	Open in IMG/M
3300031607\|Ga0307966_1322467	Not Available	544	Open in IMG/M
3300031684\|Ga0307946_1022863	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	2802	Open in IMG/M
3300031684\|Ga0307946_1032963	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas chlamydogama	2202	Open in IMG/M
3300031684\|Ga0307946_1042166	Not Available	1835	Open in IMG/M
3300031684\|Ga0307946_1055806	Not Available	1452	Open in IMG/M
3300031684\|Ga0307946_1063892	Not Available	1287	Open in IMG/M
3300031704\|Ga0307943_1077155	Not Available	1251	Open in IMG/M
3300031704\|Ga0307943_1081692	Not Available	1196	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	100.00%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	91.89%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	8.11%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300012027	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2	Environmental	Open in IMG/M
3300012028	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #401	Environmental	Open in IMG/M
3300012114	Saline lake microbial communities from Club Lake, Antarctica - Metagenome TFF #397	Environmental	Open in IMG/M
3300012121	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #1	Environmental	Open in IMG/M
3300012265	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #695	Environmental	Open in IMG/M
3300028339	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2 (v2)	Environmental	Open in IMG/M
3300031209	Saline water microbial communities from Organic Lake, Antarctica - #439	Environmental	Open in IMG/M
3300031210	Saline water microbial communities from Organic Lake, Antarctica - #596	Environmental	Open in IMG/M
3300031211	Saline water microbial communities from Organic Lake, Antarctica - #784	Environmental	Open in IMG/M
3300031212	Saline water microbial communities from Organic Lake, Antarctica - #494	Environmental	Open in IMG/M
3300031214	Saline water microbial communities from Organic Lake, Antarctica - #492	Environmental	Open in IMG/M
3300031218	Saline water microbial communities from Organic Lake, Antarctica - #919	Environmental	Open in IMG/M
3300031221	Saline water microbial communities from Organic Lake, Antarctica - #280	Environmental	Open in IMG/M
3300031222	Saline water microbial communities from Organic Lake, Antarctica - #780	Environmental	Open in IMG/M
3300031225	Saline water microbial communities from Organic Lake, Antarctica - #175	Environmental	Open in IMG/M
3300031243	Saline water microbial communities from Organic Lake, Antarctica - #712	Environmental	Open in IMG/M
3300031333	Saline water microbial communities from Organic Lake, Antarctica - #1	Environmental	Open in IMG/M
3300031334	Saline water microbial communities from Organic Lake, Antarctica - #710	Environmental	Open in IMG/M
3300031335	Saline water microbial communities from Organic Lake, Antarctica - #374	Environmental	Open in IMG/M
3300031339	Saline water microbial communities from Organic Lake, Antarctica - #48	Environmental	Open in IMG/M
3300031343	Saline water microbial communities from Organic Lake, Antarctica - #376	Environmental	Open in IMG/M
3300031382	Saline water microbial communities from Organic Lake, Antarctica - #714	Environmental	Open in IMG/M
3300031387	Saline water microbial communities from Organic Lake, Antarctica - #232	Environmental	Open in IMG/M
3300031391	Saline water microbial communities from Organic Lake, Antarctica - #437	Environmental	Open in IMG/M
3300031392	Saline water microbial communities from Organic Lake, Antarctica - #917	Environmental	Open in IMG/M
3300031393	Saline water microbial communities from Organic Lake, Antarctica - #648	Environmental	Open in IMG/M
3300031394	Saline water microbial communities from Organic Lake, Antarctica - #594	Environmental	Open in IMG/M
3300031395	Saline water microbial communities from Organic Lake, Antarctica - #490	Environmental	Open in IMG/M
3300031396	Saline water microbial communities from Organic Lake, Antarctica - #179	Environmental	Open in IMG/M
3300031397	Saline water microbial communities from Organic Lake, Antarctica - #542	Environmental	Open in IMG/M
3300031399	Saline water microbial communities from Organic Lake, Antarctica - #650	Environmental	Open in IMG/M
3300031600	Saline water microbial communities from Organic Lake, Antarctica - #46	Environmental	Open in IMG/M
3300031607	Saline water microbial communities from Organic Lake, Antarctica - #646	Environmental	Open in IMG/M
3300031684	Saline water microbial communities from Organic Lake, Antarctica - #230	Environmental	Open in IMG/M
3300031704	Saline water microbial communities from Organic Lake, Antarctica - #177	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0136609_10229501	3300012027	Saline Lake	MRIESSTGKGTSGMDKFSSEVDRVHMELGGKLLNSLKI
Ga0136609_10320401	3300012027	Saline Lake	MRIDNSTRKGMSGMDKVSSEVHRVHMELGGKLLNSLR
Ga0136584_10195191	3300012028	Saline Lake	MIDGGGTGKGTSGLDKFSSKVHRVHMELGGKLLNSLR
Ga0136595_10322331	3300012114	Saline Lake	MRVDNSTGKGTSGTDKFSSKVHRVHMELGGKLLSSL
Ga0136565_10335443	3300012121	Saline Lake	MRVDIITGKGTSGMDKFRSEVHRVHMELGGRILYSLR
Ga0136603_10134723	3300012265	Saline Lake	RVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLKSLNGME*
Ga0136603_10210861	3300012265	Saline Lake	MRVLVNSTGKGTSGMDKFSSKVHRVHMELGGNLVK
Ga0136603_10305061	3300012265	Saline Lake	MRVDNSTGKGTSGMDKFSSKVYRVHMELGGKLLNS
Ga0306916_1111281	3300028339	Saline Lake	MRVDNSTGKGTSGMDMFSSEVHRVHMELGGKLLISLK
Ga0307955_10431902	3300031209	Saline Water	RVDNSTGKGASGRKKFSSIVCRVHMDIGGKLLDSLRSKVQSFE
Ga0307955_10501981	3300031209	Saline Water	MRVDIITGKGTSGMDKFRSEVHRVHMELGGRLLYSLRR
Ga0307964_10850521	3300031210	Saline Water	MRVDNRAGKGTSGMDKFSSEVHRVLHMELGGMLLN
Ga0307964_11082851	3300031210	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELRGRLLKSCFLE
Ga0307974_100282820	3300031211	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLNKDPVP
Ga0307974_10068548	3300031211	Saline Water	MRVDNSTRKGTSGMDKLSSKLHRVHMELGGKLLNSLRISVP
Ga0307974_100948511	3300031211	Saline Water	MRDDNSTGKGTSSMDKFSSKVHRVHMELGGKLLNSLRI
Ga0307974_101242211	3300031211	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSL
Ga0307974_10228051	3300031211	Saline Water	MRVYNSTGKGTSGMVKFSSKVHRVHMELGGKLLDSLS
Ga0307974_10620715	3300031211	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELRGRLLKSCFLENRDPDP
Ga0307974_10736461	3300031211	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHVELGGKLLNSLR
Ga0307974_10972871	3300031211	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSL
Ga0307959_11453231	3300031212	Saline Water	MIVDNSTGKGTSGNMDKFSSKLHRVHMELGGKLLSSLRIEP
Ga0307958_10482173	3300031214	Saline Water	MIVDNSTGKGTSSMDNFSSKVHKVHMELEASFLIL
Ga0307976_10570141	3300031218	Saline Water	MRFDNSTGKGTSGMDKLSSEVHRVHMELGGKLINSL
Ga0307976_11256851	3300031218	Saline Water	MSVDNSTGKGTSSMDKFSSKVHRVHMELGSKLSRPR
Ga0307948_100088323	3300031221	Saline Water	MRVYNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLRIETQFLER
Ga0307948_10048101	3300031221	Saline Water	MRVDNSTGKGTSGMDKLSSKVHRLHIELGGKLLDS
Ga0307948_10073641	3300031221	Saline Water	MTVDNSTGKGTSGMVKFSSKVHRVHMELGGKLLDSL
Ga0307948_10124711	3300031221	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLYSLRIE
Ga0307948_10147198	3300031221	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLNFAAKLVHT
Ga0307948_10191249	3300031221	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLRVSAQMP
Ga0307972_10227931	3300031222	Saline Water	MRVYNSTGKGTSGMVKFSSKVHRVHMELGGKLLDSL
Ga0307972_10337035	3300031222	Saline Water	MRVDNSTGKGTSGVDKFSSKVHRVHMELGGKLLSSLRI
Ga0307972_10470441	3300031222	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLYS
Ga0307972_10550961	3300031222	Saline Water	MRVDNSTGKGTSGMNKFSSKVHRVHMELGGKLPYSLR
Ga0307972_11928631	3300031222	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLRFETQ
Ga0307942_10009511	3300031225	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLRI
Ga0307942_10085671	3300031225	Saline Water	MTVDNSTGKGTSGMVKFSSKVHRVHMELGGKLLDSLSIETQFLER
Ga0307942_10127481	3300031225	Saline Water	MRVDNSTGKGTSSMDKFSSKVHKVHMELGGKLLNSLRIETQ
Ga0307942_11834491	3300031225	Saline Water	RVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLKSLNGME
Ga0307970_10359601	3300031243	Saline Water	MSVDNSTGKGTSSMDKFSSKVHRVHMELGSKLSRP
Ga0307936_10144711	3300031333	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNS
Ga0307936_10392332	3300031333	Saline Water	MRVDNSTGKGTSGTDKFSSKVHRVHMELGGKLLSSLRIETQ
Ga0307936_10813183	3300031333	Saline Water	MRVDISTGKGTTGMDKFSSEVHRVHMELGGQQLLNSLAKLSA
Ga0307936_11259711	3300031333	Saline Water	MRVDNSTGKGTSSMDKFSSKVHRVHMELGGKLLIYLR
Ga0307969_10331491	3300031334	Saline Water	MIVDNSTGKGTSGMDKFSSKVHRVHMELRGKLLYSLRI
Ga0307969_10656911	3300031334	Saline Water	MSVGNSTGKGMSGMDKFSSRVHRVHMELGGKLLNS
Ga0307969_10847571	3300031334	Saline Water	MRVDNSTGKATSGMDEINSEVHRVHMELGGKLLTICL
Ga0307969_10854701	3300031334	Saline Water	MRVNNSTGKGTPGMDKISSEVHRVHMELGGKLLYSLK
Ga0307969_11073921	3300031334	Saline Water	MRVDNSTGKGTSGVDKISSKVHRVHMELGGKLLNSLR
Ga0307951_10228494	3300031335	Saline Water	MTVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNS
Ga0307951_10621502	3300031335	Saline Water	MRVDNSTGKGTSGMNKFNSKVHRVHMELGSKLLNFFFGGL
Ga0307951_11062981	3300031335	Saline Water	MRADNSTGKGMSGMDKYSSEVHRVHMELGGKPFNSF
Ga0307932_10740711	3300031339	Saline Water	MRVDNSTGKGMSGMDKFSSEVHRVHMELRGKLLDSLR
Ga0307952_10441572	3300031343	Saline Water	MRVDDSTGKGTSGMDKFSSEVHRVHMELGGKLLNSWR
Ga0307952_10655781	3300031343	Saline Water	MIVDNSTGKGTSGMDKFSSKVHRVHMELRGKLLYSLRIETHIL
Ga0307952_10895642	3300031343	Saline Water	MRVDNSTGKGTSGVDKFSSKVHRVHMELGGKLLSSLR
Ga0307971_11363772	3300031382	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLRIKIQ
Ga0307971_11708411	3300031382	Saline Water	MRVDNSTGKGTSGMDKFSGEVHRVHMKFGGKLLNSWS
Ga0307971_11712921	3300031382	Saline Water	LMKIDNSTGKGTSGMDKFSSKVHKVHMELGGKLLSS
Ga0307971_11754131	3300031382	Saline Water	MRVDNSTGKGTSGMDKFSSEFHRVHMELGGKLLNS
Ga0307971_11993061	3300031382	Saline Water	MRVDTNSTGKGTSGMDKFSSEVYGVHMELGGKLLNFLR
Ga0307947_10304151	3300031387	Saline Water	MRVDNSTGKGMSGMDKFSSEVHRVHMELGGKLLNSLRIET
Ga0307954_10066139	3300031391	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGSKLSRPRALK
Ga0307954_10546462	3300031391	Saline Water	MRVDNSTGKGTSSMDKFSSKVHRVHMELGGQLFNSLRIQTQFFER
Ga0307954_10656114	3300031391	Saline Water	LLMRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLRVSAQMP
Ga0307954_10701362	3300031391	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLRVKTQFL
Ga0307954_10844001	3300031391	Saline Water	MRVYNSTGKGTSGMVKFSSKVHRVHMELGGKLLDSLSIETQFLER
Ga0307975_10118504	3300031392	Saline Water	MRVDNSTGKGTPGMDKFSSKVHRVHMELGGKLLNS
Ga0307975_10841261	3300031392	Saline Water	RLLMRVDNSTGKGTYSIDKFSSRVHRRHMELGGKFLTL
Ga0307975_10909923	3300031392	Saline Water	LMRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLNKDPVP
Ga0307975_11747561	3300031392	Saline Water	MRVDNRAGKGTSGMDKFSSEVHRVLHMELGGMLLNSLRIKTQF
Ga0307975_12008671	3300031392	Saline Water	MRVGNSSGKGTSGTDKFSSKVHRVHMELGGKLLDSLSIETQFLERLQ
Ga0307975_12019981	3300031392	Saline Water	MRVDNSTGKGTSGMDKFSSEVHKVHMELRGKLLNSL
Ga0307975_12403811	3300031392	Saline Water	MRVDNSTGKGTSSMDKFSSKLHGVHMKLGGKLLNSLRIK
Ga0307967_11155273	3300031393	Saline Water	MRVDNSTGKGTSSMDKFSIKFHRVHMELGGKLLNSLRI
Ga0307967_11962291	3300031393	Saline Water	MTVDNSTGKGTSGMVKFSSKVHRVHMELGGKLLDSLS
Ga0307963_100276220	3300031394	Saline Water	MRVYNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLRI
Ga0307963_10220831	3300031394	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLR
Ga0307957_10291501	3300031395	Saline Water	MRVDNSTGKGTSGMDKFSSKVYRVHMELGGKLLNSLSIKT
Ga0307957_10346961	3300031395	Saline Water	RVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLNKDPVP
Ga0307957_10520781	3300031395	Saline Water	LARNRLLMTDDNNTGKGTSGMDKFSSKVHRVHMELGGKLLNSLGE
Ga0307957_10783881	3300031395	Saline Water	MRVDSSTGKGTSGMDKFSSEVHRVHMELGGKHFNSLRIKT
Ga0307944_10146541	3300031396	Saline Water	MRVDNSTGKGTSGMVKFSSEVHRVHMELGGKLLYSLRVKTQF
Ga0307944_10320391	3300031396	Saline Water	MRVSNSTGKGTSGMDKFSSKVHRVHMELGGKLLNS
Ga0307944_10506391	3300031396	Saline Water	MRVDNSTGKGTSGVDKFSSKVHRVHMELGGKLLSSLRIETQF
Ga0307944_10855881	3300031396	Saline Water	MRVDNSTGKGTSGMNKFSSKVHRVHMELGGKLPYSL
Ga0307944_11628302	3300031396	Saline Water	NSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLRIKI
Ga0307960_10073938	3300031397	Saline Water	MRVDNSTGKGTSGMDKFSSEFHRVHMELGGKLLNSLKIKT
Ga0307960_10092101	3300031397	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLYSL
Ga0307960_10316501	3300031397	Saline Water	MRVDNSAGKGAYDMDKFGSKVYRVHMELGGKLLNSLRIE
Ga0307960_10760852	3300031397	Saline Water	MTVDNSTGKGTSGMVKFSSKVHRVHMELGGKLLDS
Ga0307960_11412261	3300031397	Saline Water	MRVDNSTGKGTSGLDKFSSEVHRVHMELGGKLLYSLRIKT
Ga0307968_10219236	3300031399	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLRIE
Ga0307968_11252771	3300031399	Saline Water	MRVDNSTGKGTSSMDKFSSKVHRVHMEPGGKLLNSLRI
Ga0307930_11246891	3300031600	Saline Water	MRVDNSTGKGTFSMDKFSRKVHRVHMELGGKFLNS
Ga0307930_11569721	3300031600	Saline Water	MRVDIITGKGTSGMDKFRSEVHRVHMELGGRLLYSLRRPQPKP
Ga0307930_12291192	3300031600	Saline Water	MRVDNSTGKGTSGMDKFSSKTHRVHMELGGKLLNSLRIETQ
Ga0307966_100416317	3300031607	Saline Water	MRVYNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSL
Ga0307966_10246285	3300031607	Saline Water	MIVDNSTGKGTSGNMDKFSSKLHRVHMELGGKLLSSL
Ga0307966_11435821	3300031607	Saline Water	MRVDNSTGKGMSGMDKFSSKVHRVHMELGGKTCPYQT
Ga0307966_12715491	3300031607	Saline Water	MRVDNSTGKGTSGTDKFSSKVHRVHMELGGKLLYSLRIKIQF
Ga0307966_13224671	3300031607	Saline Water	MRVDNSTGKGTSSMDKFSSKVHRVHMEPGGKLLNSLR
Ga0307946_10036301	3300031684	Saline Water	MIVDNSTGKGTSGMDKFSSKVHRVHMELRGKLLNSLRIET
Ga0307946_10228635	3300031684	Saline Water	MRVDNSTGKGTSGVDKFSSKVHRVHMELGGKLLSSLRIET
Ga0307946_10329635	3300031684	Saline Water	MRVDNSTGKGTSGMDKFSSEVHRVHMELGGKLLNSLR
Ga0307946_10421664	3300031684	Saline Water	MRVDNGTGKGTSGMDKFSSKVHRVHMELGGKLLNSLRIET
Ga0307946_10558062	3300031684	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRVHMELGGKLLNSLRIET
Ga0307946_10638922	3300031684	Saline Water	MRVDNSTGKGMSGMDKFSSEVHRVHMELGGKLLNSLR
Ga0307943_10771551	3300031704	Saline Water	MRFDNSTGKGMSGMDKFSSEVHRVHMELGGKLLNSLR
Ga0307943_10816921	3300031704	Saline Water	MRVDNSTGKGTSGMDKFSSKVHRLHMELGGNLVNSW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084929

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences