NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F084880

Metagenome / Metatranscriptome Family F084880

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084880
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 44 residues
Representative Sequence HIPAALIAAAGVARLTMAEDEVVFDIPTLLDATLELCEPVGHA
Number of Associated Samples 96
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.89 %
% of genes near scaffold ends (potentially truncated) 98.21 %
% of genes from short scaffolds (< 2000 bps) 93.75 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (68.750 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(16.964 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.679 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 25.35%    β-sheet: 16.90%    Coil/Unstructured: 57.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF00459Inositol_P 77.68
PF12710HAD 8.93
PF13419HAD_2 4.46
PF00271Helicase_C 2.68
PF11743DUF3301 0.89
PF00085Thioredoxin 0.89



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A68.75 %
All OrganismsrootAll Organisms31.25 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001396|JGI20175J14863_1009464All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1537Open in IMG/M
3300002245|JGIcombinedJ26739_100914607Not Available760Open in IMG/M
3300002906|JGI25614J43888_10165371Not Available594Open in IMG/M
3300004080|Ga0062385_11109464Not Available536Open in IMG/M
3300004091|Ga0062387_100280170Not Available1061Open in IMG/M
3300004092|Ga0062389_101568992Not Available841Open in IMG/M
3300004152|Ga0062386_100381783All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1132Open in IMG/M
3300004635|Ga0062388_102412768Not Available550Open in IMG/M
3300005542|Ga0070732_10885151Not Available545Open in IMG/M
3300005602|Ga0070762_10161211All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1349Open in IMG/M
3300005921|Ga0070766_10135008All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1496Open in IMG/M
3300006052|Ga0075029_101005456Not Available576Open in IMG/M
3300006162|Ga0075030_101293553Not Available572Open in IMG/M
3300007788|Ga0099795_10248941Not Available766Open in IMG/M
3300009633|Ga0116129_1110079Not Available794Open in IMG/M
3300009709|Ga0116227_10065320All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3151Open in IMG/M
3300009709|Ga0116227_10100424All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2356Open in IMG/M
3300009709|Ga0116227_11203643Not Available569Open in IMG/M
3300009764|Ga0116134_1319082Not Available534Open in IMG/M
3300010341|Ga0074045_10953582Not Available541Open in IMG/M
3300010343|Ga0074044_10560376Not Available746Open in IMG/M
3300010858|Ga0126345_1076571Not Available577Open in IMG/M
3300011120|Ga0150983_10588551All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1538Open in IMG/M
3300012361|Ga0137360_11296225Not Available629Open in IMG/M
3300012924|Ga0137413_10084204All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1942Open in IMG/M
3300012929|Ga0137404_12196658Not Available516Open in IMG/M
3300014162|Ga0181538_10477297Not Available658Open in IMG/M
3300014168|Ga0181534_10079656All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1626Open in IMG/M
3300014168|Ga0181534_10501013Not Available687Open in IMG/M
3300014201|Ga0181537_10508284Not Available824Open in IMG/M
3300014201|Ga0181537_11081385All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium542Open in IMG/M
3300014493|Ga0182016_10544777Not Available666Open in IMG/M
3300014493|Ga0182016_10651917All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium595Open in IMG/M
3300014495|Ga0182015_10171412All Organisms → cellular organisms → Bacteria → Proteobacteria1465Open in IMG/M
3300014495|Ga0182015_10747553Not Available615Open in IMG/M
3300014501|Ga0182024_10623232All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1346Open in IMG/M
3300014657|Ga0181522_10735969Not Available603Open in IMG/M
3300015054|Ga0137420_1412819Not Available715Open in IMG/M
3300016445|Ga0182038_10542028Not Available998Open in IMG/M
3300017972|Ga0187781_11038931Not Available600Open in IMG/M
3300018014|Ga0187860_1044804All Organisms → cellular organisms → Bacteria → Proteobacteria2282Open in IMG/M
3300018038|Ga0187855_10834284All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium538Open in IMG/M
3300018042|Ga0187871_10136722All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1391Open in IMG/M
3300018043|Ga0187887_10510557Not Available709Open in IMG/M
3300019256|Ga0181508_1428633All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium705Open in IMG/M
3300020061|Ga0193716_1042238Not Available2166Open in IMG/M
3300020061|Ga0193716_1085782All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1383Open in IMG/M
3300020199|Ga0179592_10345898All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium655Open in IMG/M
3300020580|Ga0210403_10693468Not Available816Open in IMG/M
3300021168|Ga0210406_11205807Not Available550Open in IMG/M
3300021170|Ga0210400_10682139Not Available845Open in IMG/M
3300021181|Ga0210388_10039019All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3933Open in IMG/M
3300021181|Ga0210388_11072091Not Available688Open in IMG/M
3300021402|Ga0210385_10146048All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae1688Open in IMG/M
3300021404|Ga0210389_10653743Not Available825Open in IMG/M
3300021405|Ga0210387_11822595Not Available512Open in IMG/M
3300021432|Ga0210384_11563769Not Available565Open in IMG/M
3300021433|Ga0210391_10008967All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria8105Open in IMG/M
3300021433|Ga0210391_10053107All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3221Open in IMG/M
3300021474|Ga0210390_10741107Not Available817Open in IMG/M
3300021475|Ga0210392_10712843Not Available747Open in IMG/M
3300021478|Ga0210402_10640117Not Available984Open in IMG/M
3300021479|Ga0210410_10916062Not Available764Open in IMG/M
3300024271|Ga0224564_1071301Not Available692Open in IMG/M
3300024288|Ga0179589_10585004Not Available522Open in IMG/M
3300024295|Ga0224556_1102140Not Available702Open in IMG/M
3300025406|Ga0208035_1061658Not Available573Open in IMG/M
3300027803|Ga0209910_10007084Not Available795Open in IMG/M
3300027829|Ga0209773_10218443Not Available797Open in IMG/M
3300027884|Ga0209275_10117785All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1378Open in IMG/M
3300027884|Ga0209275_10631864Not Available615Open in IMG/M
3300027895|Ga0209624_10850993Not Available597Open in IMG/M
3300027910|Ga0209583_10319245Not Available712Open in IMG/M
3300028047|Ga0209526_10143893All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1671Open in IMG/M
3300028789|Ga0302232_10685757Not Available503Open in IMG/M
3300028808|Ga0302228_10327620Not Available684Open in IMG/M
3300028860|Ga0302199_1044833All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1548Open in IMG/M
3300029913|Ga0311362_11367234Not Available507Open in IMG/M
3300029944|Ga0311352_10537773Not Available940Open in IMG/M
3300029944|Ga0311352_10934533Not Available670Open in IMG/M
3300029954|Ga0311331_10869003Not Available802Open in IMG/M
3300029954|Ga0311331_11603351Not Available526Open in IMG/M
3300029955|Ga0311342_11270192Not Available525Open in IMG/M
3300029999|Ga0311339_11090548Not Available740Open in IMG/M
3300029999|Ga0311339_11585853Not Available579Open in IMG/M
3300030007|Ga0311338_11279881Not Available690Open in IMG/M
3300030053|Ga0302177_10571561Not Available579Open in IMG/M
3300030399|Ga0311353_10659635Not Available908Open in IMG/M
3300030399|Ga0311353_10805630Not Available801Open in IMG/M
3300030545|Ga0210271_10073787Not Available818Open in IMG/M
3300030580|Ga0311355_10888441Not Available810Open in IMG/M
3300030618|Ga0311354_11036715Not Available753Open in IMG/M
3300030646|Ga0302316_10141817Not Available1003Open in IMG/M
3300030906|Ga0302314_11094915Not Available758Open in IMG/M
3300030923|Ga0138296_1753114Not Available500Open in IMG/M
3300031028|Ga0302180_10260832Not Available907Open in IMG/M
3300031047|Ga0073995_10064832Not Available1080Open in IMG/M
3300031047|Ga0073995_10077752Not Available538Open in IMG/M
3300031090|Ga0265760_10202644All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium671Open in IMG/M
3300031231|Ga0170824_120323762All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae1805Open in IMG/M
3300031234|Ga0302325_10966392Not Available1170Open in IMG/M
3300031234|Ga0302325_10974059All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1163Open in IMG/M
3300031249|Ga0265339_10168486All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1098Open in IMG/M
3300031261|Ga0302140_10379703All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1150Open in IMG/M
3300031446|Ga0170820_12506878All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium540Open in IMG/M
3300031474|Ga0170818_106203134All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium751Open in IMG/M
3300031525|Ga0302326_13603677Not Available512Open in IMG/M
3300031708|Ga0310686_118139173Not Available569Open in IMG/M
3300031712|Ga0265342_10431499Not Available678Open in IMG/M
3300031715|Ga0307476_10254496All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales1283Open in IMG/M
3300031718|Ga0307474_10889286Not Available705Open in IMG/M
3300031788|Ga0302319_10731955All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium995Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil16.96%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa16.07%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.25%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog6.25%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.36%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog5.36%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.46%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.57%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.57%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.68%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.68%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.68%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated2.68%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.79%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.79%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.79%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.79%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.79%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.89%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.89%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.89%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.89%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.89%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.89%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.89%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001396Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009633Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10EnvironmentalOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010858Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018014Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300019256Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020061Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300024271Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300024295Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5EnvironmentalOpen in IMG/M
3300025406Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027803Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3SEnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028789Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3EnvironmentalOpen in IMG/M
3300028808Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2EnvironmentalOpen in IMG/M
3300028860Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3EnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030545Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO033SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030646Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300030923Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031047Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031249Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaGHost-AssociatedOpen in IMG/M
3300031261Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031712Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaGHost-AssociatedOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20175J14863_100946433300001396Arctic Peat SoilVPAALIAAAGVARLTVAENQVVFDIPTLLDTTLQLVQPAGHA*
JGIcombinedJ26739_10091460723300002245Forest SoilPAALIAAAGVAKLTIAQDEVVFDIPTLLDATLQLCEPVGHA*
JGI25614J43888_1016537123300002906Grasslands SoilPKRDQIHVPAALIAAAGVARLTLSEQEVVFDIPTLLDATLELCEPVGHA*
Ga0062385_1110946413300004080Bog Forest SoilAALIAAAGVAKLTMAEDQVVFDIPTLLDATLELCEAVGNA*
Ga0062387_10028017013300004091Bog Forest SoilRDQIHVPAALIAAAGVARLTMAEKEVVFDIPTLLDATLELCEPVGHA*
Ga0062389_10156899213300004092Bog Forest SoilALIAAAGVAKLTMAEDEVVFDIPTLLDATLEMCEPAGHA*
Ga0062386_10038178313300004152Bog Forest SoilAALIAAAGVARLTLAEDEVVFDIPTLLDATLQLCEPVGHA*
Ga0062388_10241276823300004635Bog Forest SoilDRIHVPAALIAAAGVARLTMEGDDVVFDIPALLDAALQFSEPAGHA*
Ga0070732_1088515123300005542Surface SoilLIAAAGVAKLTIAEDEVVFDIPTLLDATLQLCEPVGHA*
Ga0070762_1016121133300005602SoilAAGVARLTMAEKEVVFDIPTLLDATLELCEPIGHA*
Ga0070766_1013500833300005921SoilYQVPAALIAAAGVARLTMNEDEVAFDIQTLLDATLQLCEPAGHA*
Ga0075029_10100545623300006052WatershedsAALIAAAGVARLTVAEDEIVFDIPTLLDATLELCEPVGHA*
Ga0075030_10129355323300006162WatershedsPAALIAAAGVARLTVAADEIVFDIPTLLDATLQLCEPAGHG*
Ga0099795_1024894123300007788Vadose Zone SoilLIAAAGVARLTMSEDEVVFDIPTLLDATLEMCEPVGHA*
Ga0116129_111007913300009633PeatlandPKRDQIHVPAALIAAAGVARLTMDEQEVVFDIPTLLDATLELCEPVGHG*
Ga0116227_1006532013300009709Host-AssociatedKQKRDQVHIPAALIAAAGVARLTIAEDQVVFDIPTLLDATLELCEPVGNA*
Ga0116227_1010042413300009709Host-AssociatedQLHVPAALIAAAGVARLQVAEDEVVFDIPTLLDATLELCEAVGHA*
Ga0116227_1120364313300009709Host-AssociatedAAGVAKLTMAEDQVVFDIPTLLDATLELCEPVGNG*
Ga0116134_131908213300009764PeatlandIGAAGVARLTVAEEEVVFDIPALLDATLQLCEPVGHA*
Ga0074045_1095358223300010341Bog Forest SoilPDQIQVPAALIGAAGVARLTVAEDQVVFDIPTLLDATLRLCEPAGNA*
Ga0074044_1056037613300010343Bog Forest SoilKRDQLHVPAALIAAAGVARLTLAEDEVVFDIPTLLDATLELCEPVGHA*
Ga0126345_107657113300010858Boreal Forest SoilALIAAAGVAKLTMAEDEVVFDIPTLLDATLQLCEPVGHA*
Ga0150983_1058855113300011120Forest SoilRDQIHVPAALIAAAGVARLTMTEQEVVFDIPTLLDATLELCEPVGHA*
Ga0137360_1129622513300012361Vadose Zone SoilPAALIAAAGVARLTMSEDEVVFDIPTLLDATLEMCEPVGHA*
Ga0137413_1008420413300012924Vadose Zone SoilTMPQRRDQIHVPAALIAAAGVAKLTMAEDEVVFDIPTLLDATLQLCEAVGHA*
Ga0137404_1219665823300012929Vadose Zone SoilDQLHVPAALIAAAGVARLTMSEDEVVFDIPTLLDATLEMCEPVGHA*
Ga0181538_1047729713300014162BogVPAALIAAAGVARLTMSEDEVVFDIPTLLDSTLQLCEPAGRA*
Ga0181534_1007965633300014168BogAAGVARLTVAADQVVFDIPTLLDATLQLCEPVGHA*
Ga0181534_1050101313300014168BogAAAGVARLTMDEDEVVFDIPTLLDATLELCEAVGHA*
Ga0181537_1050828423300014201BogVSVWMTPQKQALYQVPAVLIAAAGVARLTMSEDEVAFDIPALLDATLELCEPAGRA*
Ga0181537_1108138513300014201BogIHVPAALIAAAGVARLTMAADEVVFDIPTLLDATLQLCEPVGHA*
Ga0182016_1054477723300014493BogHVPAALIAAAGVARLTLAENEVVFDIPTLLDATLELCEAVGHG*
Ga0182016_1065191723300014493BogLIAAAGVARLTMEGDEVVFDVPTLLDATLQLCEPLGNA*
Ga0182015_1017141213300014495PalsaQVPAALIAAAGVARLTMSGDEVAFDIPTLLDATLQLCEPVGHA*
Ga0182015_1074755313300014495PalsaMTAKQADQIQVPAALIGAAGVARLTLAEDEVVFDIPTLLDATLQLCEPAGHA*
Ga0182024_1062323213300014501PermafrostLIAAAGVARLTMEGDEVVFDIPTLLDATLQFCEPVGHA*
Ga0181522_1073596923300014657BogAALIAAAGVARLTVAEKEVVFDIPTLLDATLELCEPVGHG*
Ga0137420_141281913300015054Vadose Zone SoilRDQLHVPAALIAAAGVARLTMSEDEVVFDIPTLLDATLEMCEPVGHA*
Ga0182038_1054202813300016445SoilVPAALIAAAGVARLTMAEQEVVFDIPTLLDATLELCEPVGHG
Ga0187781_1103893113300017972Tropical PeatlandRNQIHVPAALIAAAGVARLTVAEDEKVVFDIPTLLDATLELCAPGGHA
Ga0187860_104480413300018014PeatlandQLHVPAALIAAAGVARLTLAEDEVVFDIPTLLDATLELCEPVGHA
Ga0187855_1083428413300018038PeatlandLIAAAGVARLTMEGDEVVFDIPTLLDATLQLCEPLGNA
Ga0187871_1013672213300018042PeatlandRKPDQIQVPAALIGAAGVARLTVAEDQVVFDIPTLLDATLRLCEPAGNA
Ga0187887_1051055713300018043PeatlandIAAAGVAKLTLTEDQVVFDIPTLLDATLELCEPVGHA
Ga0181508_142863313300019256PeatlandLIAAAGVARLTMEGDEVVFDIPTLLDATLQLCEPAGNA
Ga0193716_104223843300020061SoilQRRDQIHVPAALIAAAGVAKLTMAEDEVVFDIPTLLDATLQLCEPVGHA
Ga0193716_108578213300020061SoilLHVPAALIAAAGVARLKMAEDEVVFDIPTLLDATLELCEAVGHA
Ga0179592_1034589823300020199Vadose Zone SoilIAAAGVARLKMSEDEVVVFDIPTLLDATLEMCEPVGHA
Ga0210403_1069346823300020580SoilLIAAAGVAKLTIAEDEVVFDIPTLLDATLQLCEPVGHA
Ga0210406_1120580723300021168SoilAAAGVARLTMAEEEVVFDIPTLLDATLELCEPAGHA
Ga0210400_1068213923300021170SoilALIAAAGVARLTVSEQEVVFDIPTLLDATLELCEPVGHG
Ga0210388_1003901913300021181SoilAAAGVAKLTIAQDEVVFDIPTLLDATLQLCEPVGHA
Ga0210388_1107209123300021181SoilALIAAAGVARLTMSEDEVAFDIQTLLDATLQLCEPAGHA
Ga0210385_1014604813300021402SoilVWMTPQKQAQYQVPAALIAAAGVARLTMSEDEVAFDIQTLLDATLQLCEPAGHA
Ga0210389_1065374323300021404SoilYQVPAALIAAAGVARLTMNEDEVAFDIQTLLDATLQLCEPAGHA
Ga0210387_1182259513300021405SoilVRRHQIHVPAARIAAAGVAKLTIAEDEVVFDIPTLLDATLQLCEPVGHA
Ga0210384_1156376933300021432SoilSQRRDHIHVPAALVAAAGVATLKLAADEVVFDIPTLLDATLQLCEPVGHA
Ga0210391_10008967103300021433SoilQIHVPAALIAAAGVAKLTMAEDQVVFDIPTLLDATLELCEAVGHA
Ga0210391_1005310713300021433SoilPKRDRIHVPAALIAAAGVARLTMAEQEVVFDIPTLLDATLELCEAAGHG
Ga0210390_1074110723300021474SoilDRIHVPAALIAAAGVARLTMAEQEVVFDIPTLLDATLELCEAAGHG
Ga0210392_1071284313300021475SoilRRDQIHVPAALIAAAGVARLTMAEEEVVFDIPTLLDATLELCEPAGHA
Ga0210402_1064011723300021478SoilAALIAAAGVAKLTITEDEVVFDIPTLLDATLQLCEPVGHA
Ga0210410_1091606223300021479SoilQRRNQIHVPAALIAAAGVAKLTMAEDEVVFDIPTLLDATLQLCEPVGHG
Ga0224564_107130123300024271SoilMTPQKQAQYQVPAALIAAAGVARLTMSEDEVAFDIQTLLDATLQLCEPAGHA
Ga0179589_1058500413300024288Vadose Zone SoilIAAAGVARLTMSEDEVVFDIPTLLDATLEMCEPVGHA
Ga0224556_110214013300024295SoilLIAAAGVARLTMEGDEVVFDIPTLLDSTLQFCEPAGHA
Ga0208035_106165823300025406PeatlandHVPAALIAAAGVARLTLAADEVVFDIPTLLDATLQLCEPVGHA
Ga0209910_1000708423300027803Thawing PermafrostRHDQIHVPAALIAAAGVARLTVAADEVVFDIPTLLDVTLQLCEPAGHA
Ga0209773_1021844323300027829Bog Forest SoilPAALIAAAGVAKLTMAEDEIVFDIPTLLDATLQLCEPAGNA
Ga0209275_1011778513300027884SoilAALIAAAGVARLTMAEKEVVFDIPTLLDATLELCEPIGHA
Ga0209275_1063186423300027884SoilHPQRDRIHVPAALIAAAGVARLTMAETEVVFDIPTLLDATLELCEAAGHG
Ga0209624_1085099323300027895Forest SoilIHVPAALIAAAGVAKLTIAEDEVVFDIPTLLDATLQLCEPVGHA
Ga0209583_1031924513300027910WatershedsAFRQRNQIHVPAALIAAAGVATLTVAEDEVVFDIPTLLDATLQLCEPVGHA
Ga0209526_1014389333300028047Forest SoilAAAGVARLTVSEQEVVFDIPTLLDATLELCEPVGHA
Ga0302232_1068575713300028789PalsaRVSVWMTPQTQAQYQVPAALIAAAGVARLTMNEDEVAFDIQTLLDATLQLCEPAGNA
Ga0302228_1032762023300028808PalsaPAALIAAAGVARLTLAENEVVFDIPTLLDATLELCEPVGHG
Ga0302199_104483333300028860BogKRNQIQVPAALIAAAGVARLTMAEDEVVFDIPTLLDATLELAEPAGHA
Ga0311362_1136723423300029913BogRRRDQLHVPAALIAAAGVARLTLAADEVVFDIPTLLDATLQLCEPVGHA
Ga0311352_1053777323300029944PalsaAAGVARLTMSEDEVVFDIPTLLDATLQLCEPAGRA
Ga0311352_1093453323300029944PalsaKQPDQIQVPAALIGAAGVARLTMAEDEVVFDIPTLLDATLELCEPEGHA
Ga0311331_1086900323300029954BogAAQYQVPAALIAAAGVARLTMSEGEVAFDIQALLDATLQLCEPAGRA
Ga0311331_1160335113300029954BogHIPAALIAAAGVARLTMAEDEVVFDIPTLLDATLELCEPVGHA
Ga0311342_1127019223300029955BogQIHVPAALIAAAGVARLTLAEDEVVFDIPTLLDATLQLCEPVGNA
Ga0311339_1109054823300029999PalsaGPWMTAKQADQIQVPAALIGAAGVARLTLAEDEVVFDIPTLLDATLQLCEPAGHA
Ga0311339_1158585313300029999PalsaALIAAAGVARLTITEKEVVFDIPTLLDATLELCEPVGHA
Ga0311338_1127988123300030007PalsaQIHVPAALIAAAGVARLTVAADEVVFDIPTLLDATLQLCEPVGHA
Ga0302177_1057156123300030053PalsaLIAAAGVARLTMAEQEVVFDIPTLLDATLELCEPVGHA
Ga0311353_1065963523300030399PalsaQAQYQVPAALIAAAGVARLTMSEDEVVFDIPTLLDATLQLCEPAGRA
Ga0311353_1080563013300030399PalsaAQYQVPAALIAAAGVARLTMSEDEVGFDIQTLLDATLQLCEPSGHA
Ga0210271_1007378723300030545SoilLIAAAGVARLTMAEQQVVFDIPTLLDATLELCEPVGHA
Ga0311355_1088844113300030580PalsaTPQKQSQYHIPAALIAAAGVARLTMSEDEVVFDIPTLLDATLQLCDPAGRA
Ga0311354_1103671523300030618PalsaPAALIAAAGVARLTMSEDEVAFDIQTLLDATLQLCEPAGHA
Ga0302316_1014181713300030646PalsaHPKRDQLHVPAALIAAAGVARLTMAEQEVVFDIPTLLDATLELCEPVGHA
Ga0302314_1109491513300030906PalsaKQAQYQVPAALIAAAGVARLTMSGDEVAFDIPTLLDATLQLCEPVGHA
Ga0138296_175311423300030923SoilIAAAGVAKLTMTEDEVVFDIPTLLDATLQLCEPVGHA
Ga0302180_1026083213300031028PalsaKQSQYHIPAALIAAAGVARLTMSEDEVVFDIPTLLDATLQLCEPAGRA
Ga0073995_1006483213300031047SoilAALIAAAGVARLTMSEDEVVFDIPTLLDATLEMCEPVGHA
Ga0073995_1007775213300031047SoilRDQLHVPAALIAAAGVARLTMSEDEVVFDIPTLLDATLEMCEPVGHA
Ga0265760_1020264413300031090SoilALVAAAGVATLKIAADEVVFDIPTLLDATLQLCEPVGHG
Ga0170824_12032376233300031231Forest SoilRDQIHVPAALIAAAGVARLTMAEQEVVFDIPTLLDATLELCEPVGHG
Ga0302325_1096639223300031234PalsaWMTPQKQSQYHIPAALIAAAGVARLTMSEDEVVFDIPTLLDATLQLCDPAGRA
Ga0302325_1097405913300031234PalsaPRMTPWMARQKQAQYQVPAALIAAAGVARLTMSEDEVVFDIPTLLDATLQLCEPAGRA
Ga0265339_1016848613300031249RhizosphereHVPAALIGAAGVARLTMSAEDVVFDIPTLLDATLELCEPVGHA
Ga0302140_1037970333300031261BogIAAAGVARLTMAADDEVVFDIPTLLDATLQLCEPVGNA
Ga0170820_1250687813300031446Forest SoilTPQTRDQLHVPAALIAAAGVARLTMSEDEVVVFDIPTLLDATLEMCEPVGHA
Ga0170818_10620313413300031474Forest SoilHVPAALIAAAGVARLKMSEDEVVVFDIPTLLDATLEMCEPVGHA
Ga0302326_1360367713300031525PalsaTQRRDQIHVPAALIAAAGVARLKVSEDEVVFDIPTLLDATLELCEPVGHA
Ga0310686_11813917323300031708SoilIAAAGVARLTMSEDAVAFDIQTLLDATLQLCEPAGRA
Ga0265342_1043149913300031712RhizosphereVPAALIAAAGVARLTMAEKEVVFDIPTLLDATLELCEPVGHA
Ga0307476_1025449613300031715Hardwood Forest SoilIAAAGVARLTMAETEVVFDIPTLLDATLELCEAAGHG
Ga0307474_1088928623300031718Hardwood Forest SoilDQIHVPAALIAAAGVARLTMAEEEVVFDIPTLLDATLELCEPAGHA
Ga0302319_1073195523300031788BogPAALIAAAGVARLTMREDEVVFDIPTLLDATLELCEPVGNA


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