Basic Information | |
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Family ID | F084862 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 55 residues |
Representative Sequence | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNLIDELLEERLALIERCN |
Number of Associated Samples | 94 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 86.61 % |
% of genes near scaffold ends (potentially truncated) | 22.32 % |
% of genes from short scaffolds (< 2000 bps) | 83.93 % |
Associated GOLD sequencing projects | 86 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (81.250 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.857 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.679 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (30.357 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 85.71% β-sheet: 0.00% Coil/Unstructured: 14.29% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Groundwater Sediment Soil Groundwater Sediment Soil Soil Vadose Zone Soil Serpentine Soil Terrestrial Soil Corn, Switchgrass And Miscanthus Rhizosphere Groundwater Sand Soil Tabebuia Heterophylla Rhizosphere Arabidopsis Thaliana Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F12B_117628541 | 3300000443 | Soil | AELARLAEILAEPITWHSRRAREAENEQVRNLIDELLEETLALIERWN* |
F14TB_1007657683 | 3300001431 | Soil | MSTLAEIDAELARLAEILAEPITWHSRRAREAENEQVRNLIDELLEERLALIERCN* |
JGI25407J50210_100286105 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELL |
JGI25407J50210_100458551 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERC |
JGI25407J50210_101007731 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCS* |
Ga0063356_1051943851 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MSTLAEIDAELVRLAEILAEPISWHSRRAREAENEQVRNRIDELLEERLALIERCN* |
Ga0070713_1000457763 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTLTEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALSERCD* |
Ga0058697_100851023 | 3300005562 | Agave | MSTLAEIDAELARLVEVLAEPITWHSRRAREAENEQVRNRIDELLEERLALVERCN* |
Ga0081455_100140384 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALVERCD* |
Ga0081539_100207275 | 3300005985 | Tabebuia Heterophylla Rhizosphere | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALVERCN* |
Ga0075417_100509146 | 3300006049 | Populus Rhizosphere | MSTLAEIDAELARLAEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCN* |
Ga0074047_119435422 | 3300006576 | Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNFIDELLEERLALIERWN* |
Ga0075425_1001276594 | 3300006854 | Populus Rhizosphere | MSTLAEIDAELARLAEILAEPITWHSRGAREAENKQVRNRIDELLEERLALIERCN* |
Ga0105098_106031002 | 3300009081 | Freshwater Sediment | MSTLAEIDAELARLAEILAEPVSWHSRRAREAENEQVRNLIDELLEERLALIERCN* |
Ga0114129_113428731 | 3300009147 | Populus Rhizosphere | MSTLAEIDAELARLAEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERC |
Ga0105092_101299862 | 3300009157 | Freshwater Sediment | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERCN* |
Ga0105340_10740782 | 3300009610 | Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNFIDELLEERLALIERWN* |
Ga0126307_102205202 | 3300009789 | Serpentine Soil | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCN* |
Ga0105075_10027042 | 3300009799 | Groundwater Sand | MSTLAEIDAELARLVEILAEPITWDSRGAREAENEQVRNLIDELLEERLALIERCN* |
Ga0105073_10386011 | 3300009802 | Groundwater Sand | MSTLAEIDAELARLVEILAEPITWDSRGAREAQNEQVRNLIDELLEERLALIERWN* |
Ga0105079_10219192 | 3300009805 | Groundwater Sand | MSTLAEIDAELARLVEILAEPITWDSRGAREAQNEQARNLIDELLEERLALIERWN* |
Ga0105061_10010373 | 3300009807 | Groundwater Sand | MSTLAEIDAELARLVEILAEPISWHSRRARETENEQVRNLIDELLEERLALIERWN* |
Ga0105088_10058873 | 3300009810 | Groundwater Sand | MSTLAEIDAELARLVEILAEPISWHSRRAREAENEQVRNLIDELLEERLALIERWN* |
Ga0105084_10152032 | 3300009811 | Groundwater Sand | MSTLAEIDAELARLVEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERWN* |
Ga0105084_10332662 | 3300009811 | Groundwater Sand | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNLIDELLEDRLALIERWN* |
Ga0105070_10083885 | 3300009815 | Groundwater Sand | MSTLAEIDAELARLVEILAEPITWHSRGAREAENEQVRNLIDELLEERLALIERWN* |
Ga0105070_10451262 | 3300009815 | Groundwater Sand | AEIDAELARLVEILAEPITWDSRGAREAQNEQVRNLIDELLEERLALIERWN* |
Ga0105062_11060742 | 3300009817 | Groundwater Sand | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNLIDELLEERLALIERWN* |
Ga0105078_10039502 | 3300009823 | Groundwater Sand | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERWN* |
Ga0126313_104595431 | 3300009840 | Serpentine Soil | MSTLAEIDAELARLAEILAEPITWHTRGAREAENEQVRNLIDELLEERLALIERCN* |
Ga0126315_112556852 | 3300010038 | Serpentine Soil | MSTLAEIDAELARLAEILAEPITWHTRGASEAENEQVRNLIDELLEERLALIERCN* |
Ga0126308_100146524 | 3300010040 | Serpentine Soil | MSTLAEIDAELARLAEILAEPVSWHSRRAREAENEQVRNLIDELLEERLALIERWN* |
Ga0126312_100336355 | 3300010041 | Serpentine Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNRIDELLEERLALIERCN* |
Ga0126312_112216672 | 3300010041 | Serpentine Soil | MSTLAEIDAELARLVEILAEPITWHTRGAREAENEQVRNLIDELLEERLALIERCN* |
Ga0126310_100850052 | 3300010044 | Serpentine Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNLIDELLEERLALIERCN* |
Ga0126311_100724281 | 3300010045 | Serpentine Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNFIDELLEERLALIERCN* |
Ga0058701_104212802 | 3300010395 | Agave | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNRIDELLEERLALIERCN* |
Ga0138505_1000007765 | 3300010999 | Soil | MTGLAEIDAELAMLVETLTEPITWQSRRAREAKNEQIRNRIDDLLEERFALIERCN* |
Ga0138513_1000264333 | 3300011000 | Soil | MTGLAEIDAELAMRVETLTEPITWQSRRAREAKNEQIRNRIDDLLEE |
Ga0120192_100048952 | 3300012021 | Terrestrial | MSTLAEIDAELARLAEILAEPITWHTRGAREAENEQVRNRIDELLEERLALIERCN* |
Ga0120191_100031352 | 3300012022 | Terrestrial | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNLIDELLEERLALIERCN* |
Ga0137383_101209311 | 3300012199 | Vadose Zone Soil | AELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALSERCD* |
Ga0137365_101667102 | 3300012201 | Vadose Zone Soil | MSTLAEIDAELARLVETLAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCT* |
Ga0137365_108241611 | 3300012201 | Vadose Zone Soil | MSTLAEIDAELVRLVEVLAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCT* |
Ga0137374_101643682 | 3300012204 | Vadose Zone Soil | MSTLAEIDAELARLVETLAEPITWHRRRAREAENEQVRNRIDELLEERLALIERCT* |
Ga0137374_102006472 | 3300012204 | Vadose Zone Soil | MSGLAEIDAELARLVEILAEPITWDSRRAREAENEQVRSRIDELLEERLALIERCN* |
Ga0137374_107298862 | 3300012204 | Vadose Zone Soil | MSTLAEIDAELARLVEILAEPITWHSRGAREAENEQVRNRIDELLEERLALIERWN* |
Ga0137374_107777412 | 3300012204 | Vadose Zone Soil | MSTLAEIDAELARLVEILAEPITWDSRGAREAENEQVRNLIDELLEERLALIERWN* |
Ga0137378_102285461 | 3300012210 | Vadose Zone Soil | MSTLTEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLE |
Ga0137377_108771272 | 3300012211 | Vadose Zone Soil | MSTLTEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEE |
Ga0137377_110575902 | 3300012211 | Vadose Zone Soil | MSTLAEIDAELARLVEVLAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCT* |
Ga0137372_108832571 | 3300012350 | Vadose Zone Soil | MSTLAEIDAELARLVETLAEPITWHSRRAREAQNEQVRTRIDELLEERLALIERCT* |
Ga0137372_112383322 | 3300012350 | Vadose Zone Soil | MSTLAEIDAELARLVETLAEPITWHSRRAREAENEQVRTRIDELLEERL |
Ga0137371_111594081 | 3300012356 | Vadose Zone Soil | MSTLAEIDAELARLVEILAAPITWHSRRAREAENEQVRNRIDELLEERLALIERCN* |
Ga0137384_107331392 | 3300012357 | Vadose Zone Soil | MSTLTEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCN* |
Ga0137375_108054483 | 3300012360 | Vadose Zone Soil | MSTLAEIDAELARLVEVLAEPITWHSRSAREAENEQVRNRIDELLEERLAL |
Ga0137375_114245872 | 3300012360 | Vadose Zone Soil | STLAEIDAELARLVEILAEPITWDSRGAREAQNEQVRNLIDELLEERLALIERWN* |
Ga0162651_1000284011 | 3300012938 | Soil | MTGLAEIDAELAMLVETLTESITWQSRRAREAKNEQIRNRIDDLLEERFALIERCN* |
Ga0162650_1000055961 | 3300012939 | Soil | TMSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERWN* |
Ga0182000_102329702 | 3300014487 | Soil | MSTLAEIDAELARLVEVLAGPITWHSRRAREAENEQVRNRIDELLEERLALVERCN* |
Ga0182000_105101831 | 3300014487 | Soil | MSTLAEIDAELARLVEVLAEPITWHSRRARETENEQVRNRIDELLEERLALIERCT* |
Ga0120193_100021103 | 3300014965 | Terrestrial | MSTLAEIDAELARLVEILAEPITWHSRGAREAENEQVRNLIDELLEERLALIERCN* |
Ga0190266_100369472 | 3300017965 | Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNLIDELLEERLALIERWN |
Ga0184610_10109612 | 3300017997 | Groundwater Sediment | MSTLAEIDAELARLAEILAEPVSWHSRGAREAENEQVRNLIDELLEERLALIERWN |
Ga0184604_100082062 | 3300018000 | Groundwater Sediment | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERWN |
Ga0184605_100107104 | 3300018027 | Groundwater Sediment | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNFIDELLEERLALIERCN |
Ga0184620_100221771 | 3300018051 | Groundwater Sediment | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNLIDELLEERLALIERCN |
Ga0184638_11364142 | 3300018052 | Groundwater Sediment | MSTLAEIDAELARLVEILAEPISWHSRRARETENEQVRDLIDELLEERLALIERWN |
Ga0184638_11993282 | 3300018052 | Groundwater Sediment | MSTLAEIDAELARLVEILAEPIIWHSRRAREAENEQVRNLIDELLEERLALIERWN |
Ga0184623_100547041 | 3300018056 | Groundwater Sediment | MSTLAEIDAELARLAEVLAEPISWHSRRAREAQNEQVRNLIDELLEERLALIERWN |
Ga0184619_100045003 | 3300018061 | Groundwater Sediment | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNFIDELLEERLALIERWN |
Ga0184609_101322793 | 3300018076 | Groundwater Sediment | MSTLAEIDAELARLAEVLAEPISWHSRRAREAENEQVRNLIDELLEERLALIERWN |
Ga0184609_104342571 | 3300018076 | Groundwater Sediment | MSTLAEIDAELARLVEILAEPITWHSRGAREAENEQVRNLIDELLEERLALIERWN |
Ga0184612_102575592 | 3300018078 | Groundwater Sediment | MSTLAEIDAELARLAEILAEPDSWHSRRAREAENEQVRNLIDELLEERLALIERWN |
Ga0190275_101567272 | 3300018432 | Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERCN |
Ga0190268_100329702 | 3300018466 | Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNLIDELLEERLALIERCN |
Ga0190268_120778341 | 3300018466 | Soil | MTGLAEIDAELAMLVETLTEPITWQSRRAREAKNEQIRNRIDDLLEERFALIERCN |
Ga0184645_12353112 | 3300019233 | Groundwater Sediment | MSTLAEIDAELARLAEVLAEPISWHSRRAREADNEQVRNLIDELLEERLALIERWN |
Ga0184641_10986702 | 3300019254 | Groundwater Sediment | MSTLAEIDAELATLVETLAEPITWHSRRAREAENEQVRNLIDELLEERLALIERWN |
Ga0184644_18094462 | 3300019269 | Groundwater Sediment | MSTLAEIDAELARLAEILAEPVSWHSRRAREAENEQVRNLIDELLEERLALIERWN |
Ga0190264_101150081 | 3300019377 | Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELLQERLALIERCN |
Ga0190267_115311291 | 3300019767 | Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNRIDELLEERLALIERCN |
Ga0193739_10190893 | 3300020003 | Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAQNQQVRNLIDELLEERLALIERWN |
Ga0193696_11213382 | 3300020016 | Soil | MSTLAEIDAELARLAEILAEPVSWHSRRAREAENEQVRNLIDELLEERLALIERCN |
Ga0222625_12719811 | 3300022195 | Groundwater Sediment | MSTLAEIDAELARLVEILAEPITWDSRGAREAQNEQVRNLIDELLEERLALIERWN |
Ga0207700_100859462 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTLTEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALSERCD |
Ga0209896_10044311 | 3300027006 | Groundwater Sand | MSTLAEIDAELARLVEILAEPITWDSRGAREAENEQVRNLIDELLEERLALIERWN |
Ga0209875_10017677 | 3300027209 | Groundwater Sand | MSTLAEIDAELARLVEILAEPISWHSRRARETENEQVRNLIDELLEERLALIERWN |
Ga0209846_10118873 | 3300027277 | Groundwater Sand | MSTLAEIDAELARLVEILAEPISWHSRRAREAENEQVRNLIDELLEERLALIERWN |
Ga0209842_10103011 | 3300027379 | Groundwater Sand | MSTLAEIDAELARLVEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERWN |
Ga0209795_100383613 | 3300027718 | Agave | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCN |
Ga0209814_100106032 | 3300027873 | Populus Rhizosphere | MSTLAEIDAELARLAEILAEPITWHSRRAREAENEQVRNRIDELLEERLALIERCN |
Ga0209858_10155291 | 3300027948 | Groundwater Sand | EIDAELARLVEILAEPITWDSRGAREAQNEQVRNLIDELLEERLALIERWN |
Ga0307309_102024791 | 3300028714 | Soil | MSTLAEIDAELARLAEILAEPVSWHSRRAREAENEQVRNFIDELLEERLALIERWN |
Ga0307316_100588362 | 3300028755 | Soil | LAEIDAELARLAEILAEPISWHSRRAREAENEQVRNFIDELLEERLALIERCN |
Ga0268255_100510371 | 3300030516 | Agave | ELARLAEILAEPITWDSRRAREAENEQVRNLIDELLEERLALIERRN |
Ga0308203_10418882 | 3300030829 | Soil | MSTLAEIDAELARLAEILAEPVSWHSRGAREAENEQVRNFIDELLEERLALIERWN |
Ga0308152_1109491 | 3300030831 | Soil | MSTLAEIDAELARLAEILAEPVSWHSRRAREAENEQVRNLIDELLEERLALIER |
Ga0308202_10712772 | 3300030902 | Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNLIDELLEERLA |
Ga0308196_10543241 | 3300030989 | Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNFIDELLEERLALI |
Ga0308196_10616942 | 3300030989 | Soil | MSTLAEIDAELARLVEVLAGPMTWHSRRAREAENEQVRNRIDELLEERLALSEPCN |
Ga0308204_101985471 | 3300031092 | Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIER |
Ga0308197_101651271 | 3300031093 | Soil | MSTLAEIDAELARLVEVLAGPMTWHSRRAREAENEQVRNRIDELLEERLVLIERCN |
Ga0308191_10375511 | 3300031098 | Soil | MSTLAEIDAELARLAEILAEPISWHSRRAREAENEQVRNFIDELLEERLALIE |
Ga0308187_103635642 | 3300031114 | Soil | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNRIDELLEERLVLIERCN |
Ga0308187_104290482 | 3300031114 | Soil | AEIDAELAMLVETLTEPITWQSRRAREAKNEQIRNRIDDLLEERFALIERCN |
Ga0307408_1008618592 | 3300031548 | Rhizosphere | MSTLAEIDAKLARLAEILAEPISWHSRGAREAENEQVRNLIDELLEERLALIERWN |
Ga0307405_103334193 | 3300031731 | Rhizosphere | MSTLAEIDAELARLAEILAEPISWHSRGAREAENEQVRNLIDELL |
Ga0307407_103107362 | 3300031903 | Rhizosphere | MSTLAEIDAELARLAEILAKPISWHSRGAREAENEQVRNLIDELLEERLALIERCN |
Ga0307412_101910861 | 3300031911 | Rhizosphere | MSTLAEIDAELARLAEILAEPITWHSRGAREAENEQVRNLIDELLEERLALIERCN |
Ga0307415_1012050152 | 3300032126 | Rhizosphere | MSTLAEIDAELARLVEILAEPITWHSRRAREAENEQVRNRIDEFLEERLALIDRCN |
Ga0268251_100387741 | 3300032159 | Agave | SGHRGLNMSTLAEIDAELARLVEVLAEPITWHSRRAREAENEQVRNRIDELLEERLALVERCN |
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