Metagenome / Metatranscriptome Family F084780

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084780
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	41 residues
Representative Sequence	TVEKDTAPTSYAQPAAAGSAPGAPPRHSDARQAFEDLFKK
Number of Associated Samples	91
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.68 %
% of genes near scaffold ends (potentially truncated)	95.54 %
% of genes from short scaffolds (< 2000 bps)	91.07 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.714 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.786 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.536 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.12% β-sheet: 0.00% Coil/Unstructured: 80.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01904	DUF72	18.75
PF01168	Ala_racemase_N	13.39
PF01799	Fer2_2	7.14
PF11218	DUF3011	4.46
PF03544	TonB_C	3.57
PF13620	CarboxypepD_reg	2.68
PF00111	Fer2	1.79
PF08327	AHSA1	1.79
PF12779	WXXGXW	1.79
PF00490	ALAD	0.89
PF04237	YjbR	0.89
PF13854	Kelch_5	0.89
PF01797	Y1_Tnp	0.89
PF04014	MazE_antitoxin	0.89
PF13544	Obsolete Pfam Family	0.89
PF01872	RibD_C	0.89
PF13751	DDE_Tnp_1_6	0.89
PF00990	GGDEF	0.89
PF13535	ATP-grasp_4	0.89
PF07857	TMEM144	0.89
PF03992	ABM	0.89
PF07617	DUF1579	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	18.75
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	3.57
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	0.89
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.89
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.89
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.89
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	46.43 %
Unclassified	root	N/A	14.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.14 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	25.89 %
Unclassified	root	N/A	14.29 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.36 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.79 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.89 %
Unclassified	root	N/A	14.29 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.36 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.89 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.89 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.89 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.89 %
Unclassified	root	N/A	14.29 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5.36 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.89 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.89 %
Unclassified	root	N/A	14.29 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	5.36 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.89 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.89 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.89 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.89 %
Unclassified	root	N/A	14.29 %
Paraburkholderia piptadeniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	5.36 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.89 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.89 %
Halomonas taeanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas taeanensis	0.89 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.89 %
Unclassified	root	N/A	14.29 %
Paraburkholderia piptadeniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	5.36 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	0.89 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.89 %
Halomonas taeanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas taeanensis	0.89 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02IWO8U	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
2189573002\|GZIGXIF02JEJSD	Not Available	524	Open in IMG/M
3300002245\|JGIcombinedJ26739_100342520	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1376	Open in IMG/M
3300002245\|JGIcombinedJ26739_101795132	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300004091\|Ga0062387_100558826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300004092\|Ga0062389_104602008	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300004479\|Ga0062595_102191631	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300005434\|Ga0070709_11511443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300005436\|Ga0070713_100036776	All Organisms → cellular organisms → Bacteria	3954	Open in IMG/M
3300005526\|Ga0073909_10376620	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005537\|Ga0070730_10761923	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300005559\|Ga0066700_10300139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1132	Open in IMG/M
3300005575\|Ga0066702_10394638	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300005602\|Ga0070762_10928943	Not Available	594	Open in IMG/M
3300005764\|Ga0066903_106109741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300005995\|Ga0066790_10105483	Not Available	1210	Open in IMG/M
3300006163\|Ga0070715_10426518	Not Available	743	Open in IMG/M
3300006174\|Ga0075014_100532360	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300006804\|Ga0079221_10284643	All Organisms → cellular organisms → Bacteria → Acidobacteria	960	Open in IMG/M
3300007076\|Ga0075435_100161120	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300007255\|Ga0099791_10093225	All Organisms → cellular organisms → Bacteria → Acidobacteria	1381	Open in IMG/M
3300009012\|Ga0066710_101114693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1221	Open in IMG/M
3300009088\|Ga0099830_11339065	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300009089\|Ga0099828_11062262	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009519\|Ga0116108_1000257	All Organisms → cellular organisms → Bacteria → Acidobacteria	33935	Open in IMG/M
3300009634\|Ga0116124_1164774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300009792\|Ga0126374_10775501	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	730	Open in IMG/M
3300010159\|Ga0099796_10194481	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300010304\|Ga0134088_10493956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	603	Open in IMG/M
3300010339\|Ga0074046_10838290	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300010343\|Ga0074044_10053261	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300010359\|Ga0126376_10445622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1181	Open in IMG/M
3300010359\|Ga0126376_13151429	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300010360\|Ga0126372_11113542	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300010360\|Ga0126372_11174718	All Organisms → cellular organisms → Bacteria → Acidobacteria	790	Open in IMG/M
3300010361\|Ga0126378_10662304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1157	Open in IMG/M
3300010376\|Ga0126381_100352205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2036	Open in IMG/M
3300011120\|Ga0150983_15535989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300011271\|Ga0137393_11046356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300011271\|Ga0137393_11498089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300012202\|Ga0137363_10299469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1320	Open in IMG/M
3300012203\|Ga0137399_10266430	All Organisms → cellular organisms → Bacteria → Acidobacteria	1408	Open in IMG/M
3300012362\|Ga0137361_11316728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	647	Open in IMG/M
3300012363\|Ga0137390_10322414	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300012918\|Ga0137396_10278718	All Organisms → cellular organisms → Bacteria → Acidobacteria	1235	Open in IMG/M
3300012923\|Ga0137359_11529701	Not Available	555	Open in IMG/M
3300012927\|Ga0137416_10445594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1106	Open in IMG/M
3300012927\|Ga0137416_11266074	Not Available	665	Open in IMG/M
3300012929\|Ga0137404_11169372	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300012929\|Ga0137404_12252035	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300012929\|Ga0137404_12302727	Not Available	504	Open in IMG/M
3300012930\|Ga0137407_10110466	All Organisms → cellular organisms → Bacteria → Acidobacteria	2372	Open in IMG/M
3300012930\|Ga0137407_10148699	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300012944\|Ga0137410_11193735	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300014154\|Ga0134075_10141120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1028	Open in IMG/M
3300014968\|Ga0157379_12670432	Not Available	501	Open in IMG/M
3300015054\|Ga0137420_1482507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1503	Open in IMG/M
3300016404\|Ga0182037_11595911	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300017823\|Ga0187818_10132765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300017928\|Ga0187806_1302107	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300017934\|Ga0187803_10103873	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300017975\|Ga0187782_11339317	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300020199\|Ga0179592_10141198	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300020199\|Ga0179592_10359230	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300020579\|Ga0210407_10481677	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300020582\|Ga0210395_10303772	Not Available	1200	Open in IMG/M
3300021180\|Ga0210396_10002709	All Organisms → cellular organisms → Bacteria	17924	Open in IMG/M
3300021420\|Ga0210394_11487247	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300024246\|Ga0247680_1000016	All Organisms → cellular organisms → Bacteria	126361	Open in IMG/M
3300025441\|Ga0208456_1010049	All Organisms → cellular organisms → Bacteria → Acidobacteria	2230	Open in IMG/M
3300026291\|Ga0209890_10108960	Not Available	954	Open in IMG/M
3300026301\|Ga0209238_1039575	Not Available	1724	Open in IMG/M
3300026313\|Ga0209761_1314197	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300026333\|Ga0209158_1253462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300026490\|Ga0257153_1015841	All Organisms → cellular organisms → Bacteria → Acidobacteria	1529	Open in IMG/M
3300026490\|Ga0257153_1077304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300026551\|Ga0209648_10149538	All Organisms → cellular organisms → Bacteria → Acidobacteria	1846	Open in IMG/M
3300026551\|Ga0209648_10495643	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300026555\|Ga0179593_1118433	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300026555\|Ga0179593_1241989	All Organisms → cellular organisms → Bacteria	1776	Open in IMG/M
3300027432\|Ga0209421_1062243	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300027674\|Ga0209118_1080515	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300027783\|Ga0209448_10299364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300027812\|Ga0209656_10285466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300027862\|Ga0209701_10585501	Not Available	594	Open in IMG/M
3300027875\|Ga0209283_10211243	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300027875\|Ga0209283_10467405	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300027903\|Ga0209488_10470556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300027903\|Ga0209488_10624770	Not Available	779	Open in IMG/M
3300029636\|Ga0222749_10465930	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300031057\|Ga0170834_103556156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	549	Open in IMG/M
3300031231\|Ga0170824_102208989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	836	Open in IMG/M
3300031231\|Ga0170824_119921131	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300031718\|Ga0307474_10672060	Not Available	818	Open in IMG/M
3300031720\|Ga0307469_10673906	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300031720\|Ga0307469_12117035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas taeanensis	547	Open in IMG/M
3300031753\|Ga0307477_10414688	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300031823\|Ga0307478_10435257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1089	Open in IMG/M
3300031823\|Ga0307478_10653835	Not Available	880	Open in IMG/M
3300031823\|Ga0307478_11325708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300031890\|Ga0306925_12159673	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300031896\|Ga0318551_10497037	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300031954\|Ga0306926_13016498	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031962\|Ga0307479_10636930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	1047	Open in IMG/M
3300031962\|Ga0307479_11342482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	675	Open in IMG/M
3300032076\|Ga0306924_12309085	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300032091\|Ga0318577_10071765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1588	Open in IMG/M
3300032180\|Ga0307471_100402404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1497	Open in IMG/M
3300032180\|Ga0307471_102160915	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300032782\|Ga0335082_10698891	Not Available	875	Open in IMG/M
3300032782\|Ga0335082_11650249	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300032893\|Ga0335069_11348413	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.39%
Aquatic	Environmental → Aquatic	9.82%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.39%
Freshwater	Environmental → Aquatic → Freshwater	8.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.79%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.32%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.93%
Loam	Environmental → Terrestrial → Soil → Loam	8.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.25%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.79%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300024246	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_10197660	2170459005	Grass Soil	VTTIEKDTAPTSYQQPAQIAASLPEPIPGRPPDARQAFENLFKK
FE1_09163400	2189573002	Grass Soil	EKDTAPTSYQQPAQIAAALPEPAPGRPPDARQAFENLFKK
JGIcombinedJ26739_1003425202	3300002245	Forest Soil	MTVEKDTAPTSYMQPAQVPVEAPNPSRPLDARQAFENLFKK*
JGIcombinedJ26739_1017951323	3300002245	Forest Soil	TTVEKDTAPTSYAQKGNGPAATAPPPRHNDARQAFDNLFKK*
Ga0062387_1005588261	3300004091	Bog Forest Soil	AFRTTVEKDTAPTTYTQPNNIPAAPMAPSRPLDARQAFENLFKK*
Ga0062389_1046020082	3300004092	Bog Forest Soil	MTIEKDTAPTSYAQPAQVAAASQAPPRTNDARQAFEDLFKK*
Ga0062595_1021916312	3300004479	Soil	EKDTAPTSYQQPAQAAAAPEVSPSRPLDARQAFENLFKK*
Ga0070709_115114431	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	EKDTAPTSYTQPAAPGSVPPSGPPRHTDARQAFENLFKK*
Ga0070713_1000367765	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EKDTAPTSYQQPAQIAAALPEPTPGRPLDARQAFENLFKK*
Ga0073909_103766202	3300005526	Surface Soil	TAPTSYMQAAQTPVETPNPGRPLDARQAFENLFKK*
Ga0070730_107619232	3300005537	Surface Soil	TVEKDTAPTSYTQKNATTASTPPPPRHNDARQAFEDLFKK*
Ga0066700_103001392	3300005559	Soil	FYEFRTTIEKDTAPTSYTQPSASGSAPSAPPRHTDARQAFENLFKK*
Ga0066702_103946381	3300005575	Soil	KFYEFRTTIEKDTAPTSYTQPSASGSAPSAPPRHTDARQAFENLFKK*
Ga0070762_109289431	3300005602	Soil	DTAPTSYAQPAQVAAAAAAPPPRTNDARQAFEDLFKK*
Ga0066903_1061097411	3300005764	Tropical Forest Soil	MTVEKDTAPTSYQQPAQAAAAPEVSPSRPLDARQAFENLFKK*
Ga0066790_101054832	3300005995	Soil	TFYGFRTTVEKDTAPTTYTQPNNIPQAPLAPSRPLDARQAFENLFKK*
Ga0070715_104265182	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	TVEKDTAPTSYAQKSAAPAAAAPPRHNDARQAFEDLFKK*
Ga0075014_1005323602	3300006174	Watersheds	FRTTVEKDTAPTSYMQPAQVPAEAPAPSRPLDARQAFENLFKK*
Ga0079221_102846432	3300006804	Agricultural Soil	MTVEKDTAPTSYAQTASGPAAPPPPRSNDARQAFEDLFKK*
Ga0075435_1001611201	3300007076	Populus Rhizosphere	TAPTSYQQPAQAAAAPEVAPSRPLDARQAFENLFKK*
Ga0099791_100932251	3300007255	Vadose Zone Soil	TAPTSYSQPSAAGSAPAAPPRHNDARQAFEDLFKK*
Ga0066710_1011146931	3300009012	Grasslands Soil	CKFYEFRTTIEKDTAPTSYTQPSASGSAPSAPPRHTDARQAFENLFKK
Ga0099830_113390652	3300009088	Vadose Zone Soil	FRMTIEKDTAPTSYAQQSQAATPVPAPRHNDARQAFEDLFKK*
Ga0099828_110622622	3300009089	Vadose Zone Soil	EKDTAPTSYAQKGSAPAAAPPPRPNDARQAFENLFKK*
Ga0116108_100025727	3300009519	Peatland	TVEKDTAPTSYAQPSQVPAEAPSSGRPPDARQAFENLFKK*
Ga0116124_11647741	3300009634	Peatland	IEKDTAPASYSQKPALAASAPAPNNHHDARRAFEDLFKK*
Ga0126374_107755012	3300009792	Tropical Forest Soil	TVEKDTAPTSYSQPTQAAAAESAPTRPLDARQAFENLFKKQ*
Ga0099796_101944813	3300010159	Vadose Zone Soil	RTTVEKDTAPTSYAQKGTTAATPPPPRHNDARQAFEDLFKK*
Ga0134088_104939561	3300010304	Grasslands Soil	TTVEKDTAPTSYQQPAQIAVPEPTPGRPLDARQAFENLFKK*
Ga0074046_108382902	3300010339	Bog Forest Soil	APTSYMQAAQTPVEAPNPGRPLDARQAFENLFKK*
Ga0074044_100532612	3300010343	Bog Forest Soil	MTIEKDTAPTSYAQPAQVAAAATAPPPRTNDARQAFEDLFKK*
Ga0126376_104456223	3300010359	Tropical Forest Soil	TVEKDTAPTSYQQPAQAAAAPDVSPSRPLDARQAFENLFKK*
Ga0126376_131514292	3300010359	Tropical Forest Soil	FRTTVEKDTAPTSYAQRSASPAPAAPPRHNDARQAFEDLFKK*
Ga0126372_111135422	3300010360	Tropical Forest Soil	YEFRMTVEKDTAPTSYMQPTQIPTEAPAQARPLDARQAFENLFKK*
Ga0126372_111747182	3300010360	Tropical Forest Soil	MTVEKDTAPTSYQQPAQAAAAPETSPSRPLDARQAFENLFKK*
Ga0126378_106623041	3300010361	Tropical Forest Soil	RMTVEKDTAPTSYAQASGNASSPPPPRSSDARQAFEDLFKK*
Ga0126381_1003522051	3300010376	Tropical Forest Soil	KDTAPTSYAQSSNSSAPAPPRSNDARQAFEDLFKK*
Ga0150983_155359891	3300011120	Forest Soil	RTTVEKDTAPTSYAQKGTSTASTPPPPRHNDARQAFEDLFKK*
Ga0137393_110463562	3300011271	Vadose Zone Soil	YEFRTTIEKDTAPTSYQQPAQIAASLPEPIPGRPPDARQAFENLFKK*
Ga0137393_114980891	3300011271	Vadose Zone Soil	PTSYTQPNAPGSAPPSGPPRHTDARQAFENLFKK*
Ga0137363_102994693	3300012202	Vadose Zone Soil	EKDTAPTSYSQPSAAGSAPAAPPRHNDARQAFEDLFKK*
Ga0137399_102664301	3300012203	Vadose Zone Soil	EFRTTVEKDTAPTSYAQKGTNSSAPPPPRHNDARQAFEDLFKK*
Ga0137361_113167281	3300012362	Vadose Zone Soil	TVEKDTAPTSYQQPAQIAVPEPTPGRPLDARQAFENLFKK*
Ga0137390_103224141	3300012363	Vadose Zone Soil	VEKDTAPTSYAQKGSAPAAAPPPRPNDARQAFENLFKK*
Ga0137396_102787181	3300012918	Vadose Zone Soil	EFRMTIEKDTAPTSYTQPAAPGSTPSAAPPRHTDARQAFENLFKK*
Ga0137359_115297011	3300012923	Vadose Zone Soil	EKDTAPTSYAQKSTTAATPPPPRHNDARQAFEDLFKK*
Ga0137416_104455942	3300012927	Vadose Zone Soil	APTSYAQPAAAGSAPSAPPRHSDARQAFEDLFKK*
Ga0137416_112660741	3300012927	Vadose Zone Soil	EFRTTIEKDTAPTTYQQPAQIAAALPEPTPGRPPDARQAFENLFKK*
Ga0137404_111693721	3300012929	Vadose Zone Soil	VEKDTAPTSYSQPSAAGSAPAAPPRHNDARQAFEDLFKK*
Ga0137404_122520352	3300012929	Vadose Zone Soil	TVEKDTAPTSYAQPAAAGSAPGAPPRHSDARQAFEDLFKK*
Ga0137404_123027271	3300012929	Vadose Zone Soil	APTSYAQPAAAGSAPGAPPRHSDARQAFEDLFKK*
Ga0137407_101104661	3300012930	Vadose Zone Soil	TVEKDTAPTSYAQPSASNNGNAAAPPPSRPNDARQAFEDLFKK*
Ga0137407_101486991	3300012930	Vadose Zone Soil	EKDTAPTSYSQPAAAGSAPSAPPRHNDARQAFEDLFKK*
Ga0137410_111937351	3300012944	Vadose Zone Soil	MTVEKDTAPTSYAQPAAAGSAPGAPPRHSDARQAFEDLFKK*
Ga0134075_101411202	3300014154	Grasslands Soil	EKDTAPTSYQTAAAPGPTFPPGRPNDARKAFEDLFKK*
Ga0157379_126704321	3300014968	Switchgrass Rhizosphere	TAPTSYQQPAQAAAAAPEVSPSRPLDARQAFENLFKK*
Ga0137420_14825071	3300015054	Vadose Zone Soil	FYEFRMTEFRMTIEKDTAPTSYTQPNASGSAPPPGPPRHTDARQAFENLFKK*
Ga0182037_115959111	3300016404	Soil	TVEKDTAPTSYMQPTQVPAEAASPARPMDARQAFENLFKK
Ga0187818_101327651	3300017823	Freshwater Sediment	KDTAPTSYAQPSASGSAPAAPPRPNDARQAFEDLFKK
Ga0187806_13021072	3300017928	Freshwater Sediment	RTTVEKDTAPTSYMQPAQTPAEAPSPARPLDARQAFENLFKK
Ga0187803_101038733	3300017934	Freshwater Sediment	EKDTAPASYSQKPALAATAPGPNNHHDARRAFEDLFKK
Ga0187782_113393172	3300017975	Tropical Peatland	VEKDTAPTSYMQPAQTPTEAPAPARPLDARQAFENLFKK
Ga0179592_101411983	3300020199	Vadose Zone Soil	DTAPTSYTQPAAAGSTLPSGPPRHTDARQAFENLFKK
Ga0179592_103592302	3300020199	Vadose Zone Soil	EKDTAPTSYTQPSASGSAPSAPPRHTDARQAFENLFKK
Ga0210407_104816772	3300020579	Soil	FRMTVEKDTAPTSYMQPAQVPVEAPNPSRPLDARQAFENLFKK
Ga0210395_103037723	3300020582	Soil	TIEKDTAPTSYAQPAQVAAAASAPPPRTNDARQAFEDLFKK
Ga0210396_1000270920	3300021180	Soil	TTTEKDTAPTSYAQPAAPGSTPAAPPRHTDARQAFEDLFKK
Ga0210394_114872471	3300021420	Soil	TAPTSYMQPAQVPVEAPNPSRPLDARQAFENLFKK
Ga0247680_100001697	3300024246	Soil	MTIEKDTAPTSYAQPAQVAAAAPPPRTNDARQAFEDLFKK
Ga0208456_10100495	3300025441	Peatland	RMTVEKDTAPTSYAQPAQVAAEASSPGRPPDARQAFENLFKK
Ga0209890_101089601	3300026291	Soil	TAPTSYAQKTPTTSAAPPPRHSDARQAFEDLFKSK
Ga0209238_10395752	3300026301	Grasslands Soil	YEFRTTIEKDTAPTTYSQPAQQAAIAEAAPSRPPDARQAFENLFKK
Ga0209761_13141972	3300026313	Grasslands Soil	TVEKDTAPTSYSQPSAAGSAPAAPPRHNDARQAFEDLFKK
Ga0209158_12534622	3300026333	Soil	TTIEKDTAPTSYTQPSASGSAPSAPPRHTDARQAFENLFKK
Ga0257153_10158411	3300026490	Soil	YEFRMTVEKDTAPTSYMQPAQVPVEPPSTGRPLDARQAFENLFKK
Ga0257153_10773043	3300026490	Soil	FYEFRTTIEKDTAPTSYQQPAQIAASLPEPIPGRPPDARQAFENLFKK
Ga0209648_101495384	3300026551	Grasslands Soil	EFRMTIEKDTAPTSYTQPNAPGSAPPNGPPRHTDARQAFENLFKK
Ga0209648_104956431	3300026551	Grasslands Soil	IEKDTAPTSYTQPAAPGSAPAAAPPRHSDARQAFENLFKK
Ga0179593_11184331	3300026555	Vadose Zone Soil	KDTAPTSYMQPAQVPVEPPSSGRPMDARQAFENLFKK
Ga0179593_12419892	3300026555	Vadose Zone Soil	MTVEKDTAPTSYMQPAQVPVEAPNPSRPLDARQAFENLFKK
Ga0209421_10622431	3300027432	Forest Soil	HLYEFRTTVEKDTAPTSYMQPAQVPVEAPSPSRPLDARQAFENLFKRK
Ga0209118_10805153	3300027674	Forest Soil	FRMTIEKDTAPTSYTQPAAPGSAPPAGPPRHTDARQAFENLFKK
Ga0209448_102993642	3300027783	Bog Forest Soil	DTAPTTYTQPNNIPAAPMAPSRPLDARQAFENLFKK
Ga0209656_102854661	3300027812	Bog Forest Soil	KDTAPTTYTQPNNVPAPMAPSRPLDARQAFENLFKK
Ga0209701_105855011	3300027862	Vadose Zone Soil	TTVEKDTAPTSYAQKGTTAATPPPPRHNDARQAFEDLFKK
Ga0209283_102112433	3300027875	Vadose Zone Soil	EFRMTIEKDTAPTSYTQPNAPGSAPPTGPPRHTDARQAFENLFKK
Ga0209283_104674051	3300027875	Vadose Zone Soil	EKDTAPTSYAQKGSAPAAAPPPRPNDARQAFENLFKK
Ga0209488_104705561	3300027903	Vadose Zone Soil	YEFRMTIEKDTAPTSYTQPNASGSAPPPGPPRHTDARQAFENLFKK
Ga0209488_106247701	3300027903	Vadose Zone Soil	RTTVEKDTAPTSYAQKGTGPAAAPPPRHNDARQAFEDLFKK
Ga0222749_104659302	3300029636	Soil	PTSYAQPAQVAAAAAPSAPPRTNDARQAFEDLFKK
Ga0170834_1035561563	3300031057	Forest Soil	KFYEFRTTIEKDTAPTSYQQPAQIAASLPEPIPGRPPDARQAFENLFKK
Ga0170824_1022089892	3300031231	Forest Soil	KFYEFRTTIEKDTAPTSYQQPAQIAAALPEPIPGRPPDARQAFENLFKK
Ga0170824_1199211311	3300031231	Forest Soil	VEKDTAPTSYAQPTASNGAASAPPPSRPNDARQAFEDLFKK
Ga0307474_106720601	3300031718	Hardwood Forest Soil	TAPTSYQQPAQAAAVQEATPSRPLDARQAFENLFKK
Ga0307469_106739062	3300031720	Hardwood Forest Soil	DTAPTSYMQPAQVPVEAPNPSRPLDARQAFENLFKK
Ga0307469_121170352	3300031720	Hardwood Forest Soil	PTSYQQPAQIAAALPEPTPGRPPDARQAFENLFKK
Ga0307477_104146881	3300031753	Hardwood Forest Soil	MTIEKDTAPTSYAQPGNSAAPSAPAPRPSDARQAFEDLFKK
Ga0307478_104352572	3300031823	Hardwood Forest Soil	MTIEKDTAPTSYAQPAPPGSTPTAPPRSNDARQAFEDLFKK
Ga0307478_106538351	3300031823	Hardwood Forest Soil	TTVEKDTAPTSYQQPAQAAAVQEATPSRPLDARQAFENLFKK
Ga0307478_113257082	3300031823	Hardwood Forest Soil	KDTAPTSYAQKAPASVAAAPPRHNDARQAFEDLFKK
Ga0306925_121596732	3300031890	Soil	KDTAPTSYMQPTQVPAEAPAPSKPMDARQAFENLFKK
Ga0318551_104970371	3300031896	Soil	LYEFRTTVEKDTAPTSYMQPTQVPAEAPSPARPMDARQAFENLFKK
Ga0306926_130164982	3300031954	Soil	EFRTTVEKDTAPTSYMQPTQVPAEAPAPSKPMDARQAFENLFKK
Ga0307479_106369301	3300031962	Hardwood Forest Soil	KDTAPTSYQQPAQIAAALPEPTPGRPPDARQAFENLFKK
Ga0307479_113424821	3300031962	Hardwood Forest Soil	FYEFRTTIEKDTAPTSYQQPAQIAAALPEPIPGRPPDARQAFENLFKK
Ga0306924_123090851	3300032076	Soil	TVEKDTAPTSYMQPTQVPAEAPAPSKPMDARQAFENLFKK
Ga0318577_100717651	3300032091	Soil	TVEKDTAPTSYAQTAGPAAPAPPRSSDARQAFEDLFKK
Ga0307471_1004024044	3300032180	Hardwood Forest Soil	DTAPTSYQQPAQAAAVAEAMPSRPLDARQAFENLFKK
Ga0307471_1021609151	3300032180	Hardwood Forest Soil	TIEKDTAPTSYTQPNAPGSAPPNGPPRHTDARQAFENLFKK
Ga0335082_106988911	3300032782	Soil	KDTAPTTYSQPAQTAAVEAATPSRPLDARQAFDNLFKK
Ga0335082_116502492	3300032782	Soil	RTTVEKDTAPTSYMQPTQVPAEAPAPARPLDARQAFENLFKK
Ga0335069_113484132	3300032893	Soil	TAPTSYMQPAQVPAEVPSPRRPMDARQAFENLFKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084780

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences