Metagenome / Metatranscriptome Family F084775

Basic Information
Family ID	F084775
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	42 residues
Representative Sequence	PAAHKLLPPTLDWDVAPHVTANVRDKTVDVDLIYSVKAPK
Number of Associated Samples	105
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	89.29 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (60.714 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (8.036 % of family members)
Environment Ontology (ENVO)	Unclassified (25.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.893 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1N55_01478610 2JGI12694J13545_10163351 3JGI12712J15308_101259081 4JGIcombinedJ26739_1011929461 5Ga0062388_1003837443 6Ga0073909_101114093 7Ga0070731_101883153 8Ga0070733_109909083 9Ga0070732_109391301 10Ga0066692_106475282 11Ga0066903_1055393451 12Ga0070717_105058281 13Ga0075029_1008407581 14Ga0070715_105163231 15Ga0075018_102742412 16Ga0070712_1012379862 17Ga0070765_1001970174 18Ga0116222_12971791 19Ga0105237_119179971 20Ga0099796_102876351 21Ga0126376_107662692 22Ga0126378_101637031 23Ga0126379_106184681 24Ga0126381_1006094551 25Ga0136449_1004888621 26Ga0137389_106097941 27Ga0137388_115926762 28Ga0137398_109979422 29Ga0137397_109066551 30Ga0137404_113187911 31Ga0137410_111530711 32Ga0126375_112284381 33Ga0164309_108014631 34Ga0164304_116386471 35Ga0157373_110929901 36Ga0181523_105811682 37Ga0182018_100827233 38Ga0182024_125924751 39Ga0181525_100139361 40Ga0181516_106154051 41Ga0181522_101032244 42Ga0182007_101794271 43Ga0182005_12861551 44Ga0134072_104733352 45Ga0132257_1027618912 46Ga0187802_100730493 47Ga0187825_102254942 48Ga0187801_104166151 49Ga0187803_103580891 50Ga0187821_100793051 51Ga0187879_103281092 52Ga0187817_102171831 53Ga0187783_105094021 54Ga0187782_115957001 55Ga0181520_105335432 56Ga0187874_102319432 57Ga0187871_103163081 58Ga0187784_106994421 59Ga0187784_110421812 60Ga0187772_107930801 61Ga0187769_102389761 62Ga0187769_104364192 63Ga0187771_105668611 64Ga0193751_10405391 65Ga0210407_100329811 66Ga0210407_112667702 67Ga0210403_103994233 68Ga0210393_109260191 69Ga0210393_112178981 70Ga0210387_117700572 71Ga0210383_101399404 72Ga0210398_116021641 73Ga0126371_112773952 74Ga0242657_10642361 75Ga0224572_10435401 76Ga0208936_10002728 77Ga0207692_108077941 78Ga0207693_109604192 79Ga0207663_112161142 80Ga0207649_105262752 81Ga0207665_111068982 82Ga0209839_100109591 83Ga0209215_10202721 84Ga0209580_102805142 85Ga0209465_100031151 86Ga0209380_104980842 87Ga0209624_106978491 88Ga0209698_102181703 89Ga0209168_101172763 90Ga0265356_10424782 91Ga0302189_103319091 92Ga0302221_101431371 93Ga0308309_101329625 94Ga0311368_102113741 95Ga0311371_102739631 96Ga0302276_103078031 97Ga0265750_10134221 98Ga0170824_1167434971 99Ga0170824_1171577432 100Ga0170820_170772752 101Ga0310686_1067450006 102Ga0307474_105624052 103Ga0307474_111895952 104Ga0307477_102150033 105Ga0307478_117531541 106Ga0307479_119389371 107Ga0306924_112709701 108Ga0335079_102123994 109Ga0335079_107114481 110Ga0335081_106377623 111Ga0335074_106520811 112Ga0334847_020118_568_723
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1N55_01478610 2JGI12694J13545_10163351 3JGI12712J15308_101259081 4Ga0062388_1003837443 5Ga0070731_101883153 6Ga0066903_1055393451 7Ga0116222_12971791 8Ga0105237_119179971 9Ga0126376_107662692 10Ga0126381_1006094551 11Ga0136449_1004888621 12Ga0137389_106097941 13Ga0137388_115926762 14Ga0137398_109979422 15Ga0137397_109066551 16Ga0164304_116386471 17Ga0181523_105811682 18Ga0181522_101032244 19Ga0187879_103281092 20Ga0187772_107930801 21Ga0187769_104364192 22Ga0210403_103994233 23Ga0210387_117700572 24Ga0207665_111068982 25Ga0209580_102805142 26Ga0302221_101431371 27Ga0311368_102113741 28Ga0310686_1067450006 29Ga0307479_119389371 30Ga0335079_102123994 31Ga0335079_107114481 32Ga0335081_106377623 33Ga0335074_106520811
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40 1Ga0242657_10642361 2N55_01478610 3JGI12712J15308_101259081 4Ga0062388_1003837443 5Ga0070733_109909083 6Ga0070732_109391301 7Ga0066692_106475282 8Ga0066903_1055393451 9Ga0070715_105163231 10Ga0075018_102742412 11Ga0070712_1012379862 12Ga0116222_12971791 13Ga0126378_101637031 14Ga0126379_106184681 15Ga0136449_1004888621 16Ga0137389_106097941 17Ga0137388_115926762 18Ga0137397_109066551 19Ga0137404_113187911 20Ga0137410_111530711 21Ga0164304_116386471 22Ga0181523_105811682 23Ga0182018_100827233 24Ga0181525_100139361 25Ga0181522_101032244 26Ga0182007_101794271 27Ga0134072_104733352 28Ga0132257_1027618912 29Ga0187803_103580891 30Ga0187879_103281092 31Ga0187817_102171831 32Ga0187783_105094021 33Ga0187784_106994421 34Ga0187784_110421812 35Ga0187772_107930801 36Ga0187769_102389761 37Ga0187771_105668611 38Ga0193751_10405391 39Ga0210403_103994233 40Ga0210393_109260191 41Ga0210393_112178981 42Ga0210387_117700572 43Ga0210398_116021641 44Ga0126371_112773952 45Ga0208936_10002728 46Ga0209580_102805142 47Ga0209465_100031151 48Ga0209380_104980842 49Ga0209624_106978491 50Ga0209168_101172763 51Ga0265356_10424782 52Ga0302189_103319091 53Ga0302221_101431371 54Ga0311368_102113741 55Ga0311371_102739631 56Ga0302276_103078031 57Ga0170824_1167434971 58Ga0170824_1171577432 59Ga0310686_1067450006 60Ga0307474_105624052 61Ga0307478_117531541 62Ga0307479_119389371 63Ga0335079_102123994 64Ga0335079_107114481 65Ga0335081_106377623 66Ga0335074_106520811 67Ga0334847_020118_568_723
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.88% β-sheet: 29.41% Coil/Unstructured: 64.71%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01862	PvlArgDC	23.21
PF00106	adh_short	1.79
PF01916	DS	1.79
PF04365	BrnT_toxin	0.89
PF04371	PAD_porph	0.89
PF10282	Lactonase	0.89
PF07519	Tannase	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1945	Pyruvoyl-dependent arginine decarboxylase	Amino acid transport and metabolism [E]	23.21
COG1899	Deoxyhypusine synthase	Translation, ribosomal structure and biogenesis [J]	1.79
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.89
COG2957	Agmatine/peptidylarginine deiminase	Amino acid transport and metabolism [E]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	39.29 %
Unclassified	root	N/A	60.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	39.29 %
Unclassified	root	N/A	60.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.29 %
Unclassified	root	N/A	60.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	60.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	60.71 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.96 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	60.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.96 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	60.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.96 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	60.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.96 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
Unclassified	root	N/A	60.71 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02JKYD7	Not Available	502	Open in IMG/M
3300001166\|JGI12694J13545_1016335	Not Available	726	Open in IMG/M
3300001471\|JGI12712J15308_10125908	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300002245\|JGIcombinedJ26739_101192946	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300004635\|Ga0062388_100383744	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1213	Open in IMG/M
3300005526\|Ga0073909_10111409	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300005538\|Ga0070731_10188315	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1370	Open in IMG/M
3300005541\|Ga0070733_10990908	Not Available	564	Open in IMG/M
3300005542\|Ga0070732_10939130	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005555\|Ga0066692_10647528	Not Available	659	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.86%
Host-Associated	Host-Associated	7.14%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	16.96%
Plants	Host-Associated → Plants	7.14%
Terrestrial	Environmental → Terrestrial	75.89%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	14.29%
Peat	Environmental → Terrestrial → Peat	5.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.25%
Sediment	Environmental → Aquatic → Sediment	2.68%
Soil	Environmental → Terrestrial → Soil	70.54%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	15.18%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.39%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.11%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.36%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.46%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.68%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.25%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.68%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_01478610	2189573000	Grass Soil	YDSTYLSEYLPAAQKLLPPALDWEVVPHVTANVRDKSVDVDLIYSVKAPK
JGI12694J13545_10163351	3300001166	Forest Soil	AALKLLPPTLDWDVASHVTANGRDKTVDIDLIYTVKAPK*
JGI12712J15308_101259081	3300001471	Forest Soil	NRLLPASLDWEVVPHVTPNIRDKTVDVDLQYSVKAPKQ*
JGIcombinedJ26739_1011929461	3300002245	Forest Soil	RLLPASLDWEVVPHVTPNIRDKTVDVDLQYSVKAPKQ*
Ga0062388_1003837443	3300004635	Bog Forest Soil	LPEAHKLLAANLDWEVTPHVTANIREKSVDVDLIYSVKAPK*
Ga0073909_101114093	3300005526	Surface Soil	EAQKLLPPSLDWEVASHVTANVRDKSVDVDLIYSVKAPK*
Ga0070731_101883153	3300005538	Surface Soil	KLLPANLDWDVASHVTANVKDKSVDVDLIYSAKAPK*
Ga0070733_109909083	3300005541	Surface Soil	AQKLLPPSLDWEVASHVTANIRDKSVDVDIIYTAKAPK*
Ga0070732_109391301	3300005542	Surface Soil	AAQKLLPPAFDWEVSSHVTANERDKTVDVDLIYSVKAAK*
Ga0066692_106475282	3300005555	Soil	YLTAAQKLLPPSLDWEVASHVTANVRDKTVDVDLIYSVKAPK*
Ga0066903_1055393451	3300005764	Tropical Forest Soil	LSDYLPQAQKLLPSSLDWDVASHVTANVREKTVDVDIIYTVKAPK*
Ga0070717_105058281	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KLLPSGLDWDVSPHVTANARDRTVDVDLIYSVKAPK*
Ga0075029_1008407581	3300006052	Watersheds	YLPAAHKLLPSGLDWDVSSHVTANVRDKTVDVDLIYSVKAPK*
Ga0070715_105163231	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LPAAHKLLPSGLDWDVSPHVTANTRDKTVDVDLIYSVKAPK*
Ga0075018_102742412	3300006172	Watersheds	TYIDEYLPAAHKLLPANLDWDVTPHVTANVRDKTVDVDIIYSVKAPK*
Ga0070712_1012379862	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	NSTYLSEYLPAAERLLPPTLDWEVSPHVTPNVRDKTVDVDLIYTAKAPK*
Ga0070765_1001970174	3300006176	Soil	SEYLPAAHKLLPPTLDWDVAPHVTANVRDKTVDVDLIYSVKAPK*
Ga0116222_12971791	3300009521	Peatlands Soil	PAALDWEVSSHMTANIHDKTVDVDLIYTVKAPTEAR*
Ga0105237_119179971	3300009545	Corn Rhizosphere	LPPTLDWEVSPHVTPNVRDKTVDVDLIYTAKAPK*
Ga0099796_102876351	3300010159	Vadose Zone Soil	EYLPAAHKLLPANLDWDVAPHVTANVRDKTVDVDIIYSVKAPK*
Ga0126376_107662692	3300010359	Tropical Forest Soil	EFLPDARKLLPASLDWEVASHVTANVREKTVDVDLIYSAKAPR*
Ga0126378_101637031	3300010361	Tropical Forest Soil	SEYLPQARKLLPPTLDWDVSSHVTANVREKTVDIDLIYSVKAPK*
Ga0126379_106184681	3300010366	Tropical Forest Soil	LLPAALDWDVTPHVTANVRDKTVDVDLTYSAKAPR*
Ga0126381_1006094551	3300010376	Tropical Forest Soil	PTARKLLPPSLDWEVDPHVTANVGEKTVDVDLVYTVKAPK*
Ga0136449_1004888621	3300010379	Peatlands Soil	YLPEAQKLLPTRLDWEVSPHVTANVRDKTVDVDLIYSVRAPN*
Ga0137389_106097941	3300012096	Vadose Zone Soil	LKEYLPEANRLLPVNLDWGVTPHVTANVRDKTVDVDLQYTAKAPK*
Ga0137388_115926762	3300012189	Vadose Zone Soil	PQARKLLPANLDWEVSPHVTALSRDKTVDVDLQYTAKAPR*
Ga0137398_109979422	3300012683	Vadose Zone Soil	LPANLDWEVEPHVTAITRDKTVDVDLQYTAKATQ*
Ga0137397_109066551	3300012685	Vadose Zone Soil	LPAGFDWEVSTHATANVRDKTVDVDLIYSVKVPK*
Ga0137404_113187911	3300012929	Vadose Zone Soil	YIDEYLPAAQKLLPANLDWDVVSHVTANVHDKTVDVDIIYSVKAPK*
Ga0137410_111530711	3300012944	Vadose Zone Soil	STYLREYLAHANKLLPAALDWEVTPHVTANVRDKTVDVDLQYTARAPK*
Ga0126375_112284381	3300012948	Tropical Forest Soil	SEYLPAAHKLLPSGLDWDVTPHVTANVRDKTVDVDLIYAVKAPK*
Ga0164309_108014631	3300012984	Soil	QRLLPPTLDWEVSPHVTPNVRDKTVDVDLIYTAKAPK*
Ga0164304_116386471	3300012986	Soil	NSTYLSEYLPAARKALPANLDWDVASHVTANVKDKTVDIDLIYSAKAPK*
Ga0157373_110929901	3300013100	Corn Rhizosphere	TYLSEYLPAAQRLLPATLDWEVSPHVTPNVRDKTVDVDLIYTAKAPK*
Ga0181523_105811682	3300014165	Bog	FLPAARKLLPPTLDWDVSPHVTGNQRDKSVDVDLIYSVKAPK*
Ga0182018_100827233	3300014489	Palsa	PLARKLLPASLDWEVSTHVTALPSSKTVDVDLQYMAKAPQ*
Ga0182024_125924751	3300014501	Permafrost	ALKLLPPTLDWDVASHVTANGRDKTVDIDLIYTVKAPK*
Ga0181525_100139361	3300014654	Bog	EFLPQARKLLPPSLDWEVTPHVTALSRDKTVDVDLHYSAKAPQ*
Ga0181516_106154051	3300014655	Bog	SEYLPAAHKLLPPTLDWEVQPHVTANVRDKTVDVDLIYSVKAPK*
Ga0181522_101032244	3300014657	Bog	LPTTVDWDVTPHVTPMTADKTVDVDLQYTAKATR*
Ga0182007_101794271	3300015262	Rhizosphere	LPSAQKLLPPTLDWEVSPHVTANVGDKTVDVDLMYSAKAPK*
Ga0182005_12861551	3300015265	Rhizosphere	LLPPTLDWEVSPHVTANVKDKTVDVDLIYSAKAPK*
Ga0134072_104733352	3300015357	Grasslands Soil	YLPQAQKLLPPSLDWEVTPHVTANVKDKTVDVDLIYSAKAPK*
Ga0132257_1027618912	3300015373	Arabidopsis Rhizosphere	LSDYLPEARKLLPASLDWDVASHVTANVREKTVDVDLIYSAKAPR*
Ga0187802_100730493	3300017822	Freshwater Sediment	AQKLLPASLDWEVASHVTPNVRDKTVDVDLVYSVKAPK
Ga0187825_102254942	3300017930	Freshwater Sediment	YLPAAHKLLPSTLDWDVTPHVTANQRDKTVDVDLIYSVKAPK
Ga0187801_104166151	3300017933	Freshwater Sediment	LLPPSLDWEVASHVTPNVRDKTVDVDLVYSVKAPK
Ga0187803_103580891	3300017934	Freshwater Sediment	YLDAYLPEAHKLLPSRLDWEVEPHVTANVRDKTVDVDIVYSVRAPN
Ga0187821_100793051	3300017936	Freshwater Sediment	NTTYLDEYLPAAHKLLPAALDWDVDPHVTANQRDKTVDVDLIYSVKAPK
Ga0187879_103281092	3300017946	Peatland	QFLPLARKLLPPNLDWEVDPHVTAITRDKAVDVDLQYTAKATQ
Ga0187817_102171831	3300017955	Freshwater Sediment	SEYLPAAHKLLPPNLDWEVASHVTANVRDKSVDVDLIYSVKAPK
Ga0187783_105094021	3300017970	Tropical Peatland	VYDANYLAEYLPAAHKLLPASLDWEVDPHVTANIRDKTVDVDLIYSVKAPK
Ga0187782_115957001	3300017975	Tropical Peatland	AAHKLLPASLDWEVEPHVTANIRDKTVDVDLIYSVKAPK
Ga0181520_105335432	3300017988	Bog	LLPPTLDWEVASHVTANVRDKSVDVDLVYSVKAPK
Ga0187874_102319432	3300018019	Peatland	AAQKLLPPTLDWEVASHVTANVRDKSVDVDLVYSVKAPK
Ga0187871_103163081	3300018042	Peatland	RKLLPANMDWEVAPHVTAMARDKTVDVDLQYTAKAPQ
Ga0187784_106994421	3300018062	Tropical Peatland	YLPQAQKLLPANLDWEVADHVTANSHDKTVDVDLNYTAKAPR
Ga0187784_110421812	3300018062	Tropical Peatland	KLLPTTVDWDVSSHVTPIAVDKTVDVDLQYTAKALR
Ga0187772_107930801	3300018085	Tropical Peatland	LPAARKLLPANMDWDVASHVTAMAKDRTVDVDLQYTAKAPQ
Ga0187769_102389761	3300018086	Tropical Peatland	SYLSEARKLLPSRLDWEISPHATANVRDKTVDVDMIFSVKAPS
Ga0187769_104364192	3300018086	Tropical Peatland	ARKLLPSRLDWEISPHATANIRDKTVDVDMIFSVKAPS
Ga0187771_105668611	3300018088	Tropical Peatland	LTEAHKLLPSRLDWQVDPHVTANLRDKTVDVDIIYSVKAPN
Ga0193751_10405391	3300019888	Soil	PAANHLLPPALDWDVAPHVTANIRDKTVDVDLIYSVRAPK
Ga0210407_100329811	3300020579	Soil	FDSTYLSEYLPTAHKLLPSGLDWDVSPHVTANARDRTVDVDLIYSVKAPK
Ga0210407_112667702	3300020579	Soil	VFDSTYLSEYLPAAHKLLPSGLDWDVSPHVTANARDKTVDVDLIYSVKAPK
Ga0210403_103994233	3300020580	Soil	SEYLPAAQKLLPANFDWDVTHHETANFRDKSVDVDLIYSVKAPK
Ga0210393_109260191	3300021401	Soil	PKARKLLPANLDWEVAPHVTAMARDKTVDVDLQYTAKAPQ
Ga0210393_112178981	3300021401	Soil	LPAAQKLLPVNFDWDVASHVTSNLRDKSVDVDLIYTVKAPK
Ga0210387_117700572	3300021405	Soil	ARKLLPPAFDWDVDPHVTPIVRDKTVDVDLQYTVKATQ
Ga0210383_101399404	3300021407	Soil	KARQLLPANRDWEVAPHVTAMARDKTVDVDLQYTAKAPQ
Ga0210398_116021641	3300021477	Soil	LPAAQKLLPANFDWDVASHVTANIRDKSVDVDLIYSVKVPK
Ga0126371_112773952	3300021560	Tropical Forest Soil	LPTARKLLPPSLDWEVDPHVTANVGEKTVDVDLVYTVKAPK
Ga0242657_10642361	3300022722	Soil	PAAHKLLPPTLDWDVAPHVTANVRDKTVDVDLIYSVKAPK
Ga0224572_10435401	3300024225	Rhizosphere	ALKLLPPTLDWEVAPHVTANVRDKSVDVDLIYSVKAPK
Ga0208936_10002728	3300025404	Peatland	RKLLPASVDWEVSSHVTAISRDKTIDVDLQYMAKAPR
Ga0207692_108077941	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	EAHKLLPASLDWDVASHVTANVREKTVDVDLIYSAKAPR
Ga0207693_109604192	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	NSTYLSEYLPAAERLLPPTLDWEVSPHVTPNVRDKTVDVDLIYTAKAPK
Ga0207663_112161142	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AQRLLPPTLDWEVSPHVTPNVRDKTVDVDLIYTAKAPK
Ga0207649_105262752	3300025920	Corn Rhizosphere	QRLLPPTLDWEVSPHVTANVKDKTVDVDLIYSAKAPK
Ga0207665_111068982	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSWSRPGTIDEYLPAAQKLLPANLDWDVTPHVTANVRDKTVDVDIIYSV
Ga0209839_100109591	3300026294	Soil	YLPAAHKLLPPTLDWDVAPHVTANGRDKTVDVDLIYSVKAPK
Ga0209215_10202721	3300027266	Forest Soil	EYLPAAHKLLPSGLDWDVSPHVTANARDKTVDVDLIYSVKAPK
Ga0209580_102805142	3300027842	Surface Soil	FDATYLKQYLPEAQKLLPTRLDWDIAPHVTDNLRDKTVDVDFQLTVKAPK
Ga0209465_100031151	3300027874	Tropical Forest Soil	ARKILPANLDWDVASHVTANVKDKSVDVDLIYTAKAPK
Ga0209380_104980842	3300027889	Soil	PAALKLLPASLDWDVASHVTANVRDKSVDVDLIYSVKAPK
Ga0209624_106978491	3300027895	Forest Soil	QEYLPQARKLLTATVDWEVSSHTTANARDKTVDVDLQYSAKAPR
Ga0209698_102181703	3300027911	Watersheds	DQYLPAAQKLLPASLDWEVASHVTANVRDKTVDVDLVYSVKAPK
Ga0209168_101172763	3300027986	Surface Soil	LGEYLPDARKLLPSNFDWDVSSHVTANVREKTVDVDLIYAVKAAPK
Ga0265356_10424782	3300028017	Rhizosphere	TYLDEYLPAALKLLPPTLDWDVASHATANDRDKTVDIDLIYTVKAPK
Ga0302189_103319091	3300028788	Bog	QKLLPPTMDWEVTPHVTALSRDKTVDVDLQYTAKAPQ
Ga0302221_101431371	3300028806	Palsa	LLPPTLDWDVATHVTALTGNKTVDVDLQYTAKAPQ
Ga0308309_101329625	3300028906	Soil	PEARKLLPPSLDWEVDPHVTAITRDKTVDVDLQYTAKATQ
Ga0311368_102113741	3300029882	Palsa	KLLPASVDWEVSTHVTALVRDKTIDVDLQYMAKAPH
Ga0311371_102739631	3300029951	Palsa	PAAHKLLPGRFDWEVSSHVTANAKDKTVDVDLIYTVKAPK
Ga0302276_103078031	3300029992	Bog	PQARKLLPPSLDWEVSSHVTAIAREKTVDVDLQYTAKAPK
Ga0265750_10134221	3300030813	Soil	PAALKLLPPTLDWEVAPHVTANVRDKSVDVDLIYSVKAPK
Ga0170824_1167434971	3300031231	Forest Soil	QEYLPEALKLLPTALDWDVAPHVTANVRDKSVDVDLIYSVKAPK
Ga0170824_1171577432	3300031231	Forest Soil	ATYLGEYLPTAQKLLPAALDWEVASHVTANVRDKTVDVDLIYSVKAPK
Ga0170820_170772752	3300031446	Forest Soil	TYLGEYLPTAQKLLPAALDWEVASHVTANVRDKTVDVDLIYSVKAPK
Ga0310686_1067450006	3300031708	Soil	LPQARKLLPVTVDWDVSSHVTAIAREKTVDVDLQYTAKATH
Ga0307474_105624052	3300031718	Hardwood Forest Soil	QARRLLPASLDWEVEPHVTAMIRDKTVDVDLQYTAKAPR
Ga0307474_111895952	3300031718	Hardwood Forest Soil	DSTYLSEYLPAAHKLLPATLDWDVAPHVTANGRDKTVDVDLIYSVKAPK
Ga0307477_102150033	3300031753	Hardwood Forest Soil	LLPATLDWDVAPHVTANAHDKTVDVDLIYSVKAPK
Ga0307478_117531541	3300031823	Hardwood Forest Soil	TYLEQYLPEARKLLTANLDWLVSAHVTANVKDKTVDVDLIYSVKAPK
Ga0307479_119389371	3300031962	Hardwood Forest Soil	YVPQARKLLPASLDWDITPHVTANLRDKTVDVDFQLTPNAPK
Ga0306924_112709701	3300032076	Soil	ARKLLPSGLDWDVSSHVTANVRDKTVDVDLIYSVKAPK
Ga0335079_102123994	3300032783	Soil	ATYLSDYLAEAHELLPANLDWEVSSHVTANIREKTVDVDLIYSAKAPK
Ga0335079_107114481	3300032783	Soil	DSTYLSEYLPQARKLLPSSALDWEVQSHVTANVRDKTVDVDLIYTAKAVPL
Ga0335081_106377623	3300032892	Soil	NASYLDEYLPIAHKLLPSNFDWDVASHVTPNLRDKTVDVDLIYTVKALQSQ
Ga0335074_106520811	3300032895	Soil	LLPTTLDWDVASHVTPNIGDKTVDVDLIYTAKAPLSR
Ga0334847_020118_568_723	3300033826	Soil	VYDATYLSEYLPAAQKLLPPSLDWDVASHVTANIKDKTVDVDLIYSVKAPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084775

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences