Metagenome Family F084697

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084697
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	74 residues
Representative Sequence	REPNLTRLNGGFSSLIEHLQSADMAPTVPMVTAATELQKVLTKLMADWNQFKTKDVAAINEQLRAANKPVLNP
Number of Associated Samples	79
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.11 %
% of genes from short scaffolds (< 2000 bps)	97.32 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.714 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (15.179 % of family members)
Environment Ontology (ENVO)	Unclassified (64.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.750 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.43% β-sheet: 0.00% Coil/Unstructured: 42.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04134	DCC1-like	90.18
PF13594	Obsolete Pfam Family	4.46
PF00449	Urease_alpha	1.79
PF07969	Amidohydro_3	1.79

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	90.18
COG0804	Urease alpha subunit	Amino acid transport and metabolism [E]	1.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	17.86 %
Unclassified	root	N/A	14.29 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	14.29 %
Unclassified	root	N/A	14.29 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.79 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	14.29 %
Unclassified	root	N/A	14.29 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.68 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	14.29 %
Unclassified	root	N/A	14.29 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.68 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000532\|CNAas_1002125	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300000891\|JGI10214J12806_10414892	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300000953\|JGI11615J12901_10025751	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300000953\|JGI11615J12901_10347694	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300002896\|JGI24802J43972_1021494	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300004114\|Ga0062593_101477255	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300004114\|Ga0062593_103310706	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	517	Open in IMG/M
3300004156\|Ga0062589_100553518	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	985	Open in IMG/M
3300004156\|Ga0062589_101876490	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300004643\|Ga0062591_100660565	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300005293\|Ga0065715_10033443	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300005293\|Ga0065715_10452771	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300005293\|Ga0065715_10843057	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005294\|Ga0065705_10035606	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300005294\|Ga0065705_10149722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1969	Open in IMG/M
3300005294\|Ga0065705_10583893	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005294\|Ga0065705_10913633	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005295\|Ga0065707_11128985	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005330\|Ga0070690_100811995	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300005334\|Ga0068869_101173808	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300005338\|Ga0068868_102388558	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005341\|Ga0070691_10450972	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300005345\|Ga0070692_10309542	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300005345\|Ga0070692_10669041	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300005354\|Ga0070675_102139059	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300005364\|Ga0070673_101220171	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005543\|Ga0070672_101233062	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300005564\|Ga0070664_102203249	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005564\|Ga0070664_102220163	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	521	Open in IMG/M
3300005577\|Ga0068857_102481863	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005617\|Ga0068859_101651923	Not Available	708	Open in IMG/M
3300005618\|Ga0068864_101351593	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300005841\|Ga0068863_101948202	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300005842\|Ga0068858_100765645	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300005844\|Ga0068862_100285561	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300005844\|Ga0068862_102674850	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300006058\|Ga0075432_10086058	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300006169\|Ga0082029_1254071	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300006169\|Ga0082029_1295958	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300006169\|Ga0082029_1408839	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300006804\|Ga0079221_10567356	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300006914\|Ga0075436_101138788	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300006954\|Ga0079219_11814623	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300009098\|Ga0105245_13093802	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300009148\|Ga0105243_10569734	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300009162\|Ga0075423_10783424	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300009162\|Ga0075423_12602132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300009174\|Ga0105241_10988621	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300009174\|Ga0105241_12544858	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300009177\|Ga0105248_11051944	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300009177\|Ga0105248_11896572	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300009553\|Ga0105249_10819220	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300009789\|Ga0126307_11547579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300009840\|Ga0126313_11330831	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300010036\|Ga0126305_10113419	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300010042\|Ga0126314_10382672	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300010047\|Ga0126382_12080505	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	543	Open in IMG/M
3300010166\|Ga0126306_10588833	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300010373\|Ga0134128_11545765	Not Available	730	Open in IMG/M
3300010375\|Ga0105239_11264437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	851	Open in IMG/M
3300010399\|Ga0134127_10890683	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300010399\|Ga0134127_11374659	Not Available	776	Open in IMG/M
3300010399\|Ga0134127_11990150	Not Available	659	Open in IMG/M
3300010399\|Ga0134127_13547254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	511	Open in IMG/M
3300010400\|Ga0134122_11318311	Not Available	731	Open in IMG/M
3300012899\|Ga0157299_10095533	Not Available	760	Open in IMG/M
3300013297\|Ga0157378_12661057	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	553	Open in IMG/M
3300013307\|Ga0157372_11767298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	711	Open in IMG/M
3300014325\|Ga0163163_10673182	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300014325\|Ga0163163_11573698	Not Available	718	Open in IMG/M
3300014326\|Ga0157380_12088786	Not Available	629	Open in IMG/M
3300014326\|Ga0157380_12912386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	545	Open in IMG/M
3300014745\|Ga0157377_10617518	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	776	Open in IMG/M
3300014745\|Ga0157377_10666110	Not Available	751	Open in IMG/M
3300014968\|Ga0157379_10570940	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300015262\|Ga0182007_10092682	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300018476\|Ga0190274_11360474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	798	Open in IMG/M
3300025900\|Ga0207710_10579691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	585	Open in IMG/M
3300025904\|Ga0207647_10808616	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	504	Open in IMG/M
3300025908\|Ga0207643_11117150	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	508	Open in IMG/M
3300025911\|Ga0207654_11232255	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	545	Open in IMG/M
3300025912\|Ga0207707_10144937	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300025913\|Ga0207695_11709194	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	510	Open in IMG/M
3300025920\|Ga0207649_10732312	Not Available	768	Open in IMG/M
3300025931\|Ga0207644_11068995	Not Available	678	Open in IMG/M
3300025940\|Ga0207691_10412994	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300025945\|Ga0207679_10121340	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M
3300025945\|Ga0207679_10772717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	875	Open in IMG/M
3300025960\|Ga0207651_10783026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	845	Open in IMG/M
3300025960\|Ga0207651_11839718	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300026035\|Ga0207703_10271988	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300026035\|Ga0207703_10463984	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300026035\|Ga0207703_10578681	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300026035\|Ga0207703_10638699	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300026088\|Ga0207641_10550183	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300026088\|Ga0207641_11794404	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300026089\|Ga0207648_10294358	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300026095\|Ga0207676_11386780	Not Available	699	Open in IMG/M
3300026142\|Ga0207698_11446611	Not Available	702	Open in IMG/M
3300028380\|Ga0268265_10876437	Not Available	880	Open in IMG/M
3300028380\|Ga0268265_12053612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	579	Open in IMG/M
3300028381\|Ga0268264_10508361	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300028381\|Ga0268264_11932496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	599	Open in IMG/M
3300031548\|Ga0307408_100671294	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300031548\|Ga0307408_101198424	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300031716\|Ga0310813_10869133	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300031716\|Ga0310813_12296642	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	511	Open in IMG/M
3300031720\|Ga0307469_10875627	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300031852\|Ga0307410_10992324	Not Available	724	Open in IMG/M
3300032421\|Ga0310812_10201441	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300033412\|Ga0310810_10404681	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.61%
Environmental	Environmental	38.39%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.61%
Terrestrial	Environmental → Terrestrial	38.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.00%
Roots	Host-Associated → Plants → Roots	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.11%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	21.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.71%
Loam	Environmental → Terrestrial → Soil → Loam	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.57%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	21.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.68%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	15.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.36%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.46%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.57%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000532	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled	Host-Associated	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002896	Soil microbial communities from Manhattan, Kansas, USA - Sample 300um Nextera	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
CNAas_10021251	3300000532	Quercus Rhizosphere	GLPSGTIDMRDPNLTRLNGGFSSLIEHLQSADLPPTVPMVTAATELQKILTKLLANWEQFQTKDVAAINEQLRAANQPALVP*
JGI10214J12806_104148921	3300000891	Soil	LNNGFSAMLDHLQDADLAPTEPMVTAATELQKVLTKLMADWDQFKTKDVATINEQLRAANQPVLNP*
JGI11615J12901_100257512	3300000953	Soil	EPNLTRLNGGFSSLLEHLQSADLAPTEPTVTAATELQKVLKMLLADWETFKKTDVTAINQQLRAANQALLNP*
JGI11615J12901_103476941	3300000953	Soil	ALAGEGRGDGPGGGTIDVREPNLTKLNNGFSSLLEHLQSADLAPTQPMVNASFELQKVLTKLLADWEQLKRDVVPINEQLIRANQAPLIVK*
JGI24802J43972_10214941	3300002896	Soil	SSPGLPGGTIDMREPNLTRLNNGFSSLIEHLQTADLAPTVPMVTAATELQKVLTKLMGDWDQLKTKDVTAINVQLRAANQPPLNP*
Ga0062593_1014772551	3300004114	Soil	TRLNNGFSAMLDHLQDADLAPTEPMVTAATELQKVLTKLMADWDQFKTKDVATINEQLRAANQPVLNP*
Ga0062593_1033107061	3300004114	Soil	AIGGEGRGDASSPGLPGGTIDMREPNLTRLNNGYSSLIEHLQTADLAPTVPMVTAATELQKTLTKLMSDWDQLKTKDVATINEQLRAANQPVLNP*
Ga0062589_1005535183	3300004156	Soil	DKKAATIGGEGRGEGSSPGLPGGTIDVRDPNLTRLNGGFSSLLEHLQSADMAPTEPMVTAASELQKVLKKLLADWETFKTMDVAAINQQLRAANQPLLKP*
Ga0062589_1018764902	3300004156	Soil	NNGFSAMLDHLQDADLAPTEPMVTAATELQKVLTKLMADWDQFKTKDVAAINEQLRAANQPVLNP*
Ga0062591_1006605651	3300004643	Soil	KAATIGGEGRGEGTSPGLPGGTIDVRDPNLTRLNGGFSSLLEHLQSADMAPTEPMVTAASELQKVLKKLLADWETFKTMDVAAINQQLRAANQPLLKP*
Ga0065715_100334433	3300005293	Miscanthus Rhizosphere	LLDHLQSADLAPTVPTVTAATELQKVLTKLMADWSQFKTKDVAAINEQLRAANQPVLNP*
Ga0065715_104527711	3300005293	Miscanthus Rhizosphere	FSSLLEDLQNADLAPTQPMVSAATEMQKTLTKLLADWDTFKTKDVSAINEQLRAANQPVLNP*
Ga0065715_108430572	3300005293	Miscanthus Rhizosphere	TSPGLPGGTIDVRDPNLTRLNGGISSLLEHLQSADMAPTEPMITAATELQKALKKLLADWQTFKTTDVAAINQRLRAANQPLLNP*
Ga0065705_100356061	3300005294	Switchgrass Rhizosphere	GRGDGGSPGLPGGTIDMREPNLTRLNGGFSSLIEHLQSADVAPTVPMVTAATEXQKVLTKLMADWNQLKTKDVAAINXXLRAANKPSLNP*
Ga0065705_101497221	3300005294	Switchgrass Rhizosphere	GLPGGTIDVREPNLTRLNGGFSSLLEHLQSADLAPTVPTVTAATELQKVLKKLLSDWETFKKTDVAAINQQLRAANQRLLNP*
Ga0065705_105838932	3300005294	Switchgrass Rhizosphere	RLNGGYSSLLEHLQSADIAPTQPMLTASSELQKVLKKLLSDWEALKTTEVAAMNQQLRAANQPLLNP*
Ga0065705_109136332	3300005294	Switchgrass Rhizosphere	PGGTIDMREPNLTRLNNGFSSLLEHLQNADLAPTQPTVTAATELQKILAKLMADWNEFKTKDVAAMNEQLRAANQPVLNP*
Ga0065707_111289852	3300005295	Switchgrass Rhizosphere	SLLEHLQSADLAPTVPTVTAATELQKVLKKLLSDWETFKKTDVAAINQQLRAANQRLLNP
Ga0070690_1008119951	3300005330	Switchgrass Rhizosphere	IEHLQTADLAPTQPMVTAAAELQKVLTKLMADWDQLKTKDIAAINEQLRVANQPPVNP*
Ga0068869_1011738081	3300005334	Miscanthus Rhizosphere	IAGEGRGDGPGGGTIDVREPNLTRLNNGFSSLLEDLQSADLAPTQPMVNASSELQKVLTKLLADWEQLKRDMVPINEQLQRANQSPLVVK*
Ga0068868_1023885581	3300005338	Miscanthus Rhizosphere	FSALLDHLQDPDLAPTEPMVVAATELQKTLTKLMADWNQLKTKDVAAMNEQLRAANQPLLNP*
Ga0070691_104509723	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	ADMAPTQPMLTAASELQKTLTKLLADWEALKTTDVQAMNAQLRAANQPVLNP*
Ga0070692_103095423	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	REPNLTRLNGGFSSLIEHLQSADMAPTVPMVTAATELQKVLTKLMADWNQFKTKDVAAINEQLRAANKPVLNP*
Ga0070692_106690412	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	GEGRGDGPGGGTIDVREPNLTKLNNGFSSLLEHLQSADLAPTQPMVNASFELQKVLTKLLADWEQLKRDVVPINEQLQRSNQAPLIVK*
Ga0070675_1021390592	3300005354	Miscanthus Rhizosphere	EHLQTADLAPTQPMVTAAAELQKTLAKLTADWNELKTKDVAAINQQLRAANQPVLNP*
Ga0070673_1012201712	3300005364	Switchgrass Rhizosphere	KKAAAIGGEGRGEGTSPGLPGGTIDVRDPNLTRLNGGISSLLEHLQSADMAPTDPMVTAATELQKALKKLLADWQTFKTTDVAAINQRLRAANQPLLNP*
Ga0070672_1012330621	3300005543	Miscanthus Rhizosphere	SPGLPGGTIDMREPNLTRLNNGFSSLIEHLQTADLAPTQPMVTAATELQKTLTKLMSDWDQLKTKDIAAINEQLRAANKPVLNP*
Ga0070664_1022032491	3300005564	Corn Rhizosphere	SLIEHLQTADLAPTQPMVIAATELQKTLAKLMADWDQLKTKDVAAINQQLRAANQPPLNP
Ga0070664_1022201632	3300005564	Corn Rhizosphere	PNLTRLNGGFSSLIEHLQSADMAPTMPMVNAATELQKVLTKLMMDWNQFKTKDVAAINEQLRAANKPVLNP*
Ga0068857_1024818631	3300005577	Corn Rhizosphere	GLPGGTIDMREPNLTRLNNGFSAMLDHLQDADLAPTEPMVTAATELQKVLTKLMADWDQFKTKDVAAINEQLRAANQPVLNP*
Ga0068859_1016519231	3300005617	Switchgrass Rhizosphere	KAAAIAGEGRGDGPGGGTIDVREPNLTRLNGGFSSLLEQLQSADLAPTQPMVSASFELQKVLLKLLVDWENLKSNEITAINGQLRAANQPPLTF*
Ga0068864_1013515932	3300005618	Switchgrass Rhizosphere	KKAAAIGGEGRSDASSPGLPGGTIDMREPNLTRLNNGFSAMLDHLQDADLAPTEPMVTAATELQKVLTKLMADWDQFKTKDVATINEQLRAANQPVLNP*
Ga0068863_1019482022	3300005841	Switchgrass Rhizosphere	LLEHLQSADMAPTEPMITAATELQKALKKLLADWQTFKTTDVAAINQRLRAANQPLLNP*
Ga0068858_1007656453	3300005842	Switchgrass Rhizosphere	EGRGDGPGGGTIDVREPNLTKLNNGFSSLLEHLQSADLAPTQPMVNASSELQKVLTKLLADWEQLKRDMVPINEQLQRANQSPLVVNE*
Ga0068862_1002855611	3300005844	Switchgrass Rhizosphere	RDPNLTRLNGGFSSLLEHLQSADMAPTEPMVTAASELQKVLKKLLPDWETFKTMDVAAINQQLRAANQPLLKP*
Ga0068862_1026748502	3300005844	Switchgrass Rhizosphere	RDPNLTRLNGGFSSLLEHLQSADIAPTEPMVTAATELQKVLKKLLADWQTFKTTDVAAINQRLRAANQPLLNP*
Ga0075432_100860581	3300006058	Populus Rhizosphere	QSADMAPTQPTLTAASELQKTLQKLLADWEALKTTDVATINQQLRAANQPVLNP*
Ga0082029_12540713	3300006169	Termite Nest	GFSSLIEHLQSADVAPTVPMVTAAPELQKVLTKLLADWNQFETKDVAAINEQLRAANKPVLKP*
Ga0082029_12959582	3300006169	Termite Nest	GGTIDVRDPNLRRLNNGFSSLLEHLQNADLAPTVPMVTAASELQKVLAKLLADWDQFKTKDVAAINERLRAANQPLLTP*
Ga0082029_14088392	3300006169	Termite Nest	LDKKLAALAGEGRGDGPGGGTIDVREPNLTRLNGGFSSLLEHLQSADLAPTQPMVQASFELQKVLAKLLADWENLKHTDIKAINAQLPKPNQPQLIFR*
Ga0079221_105673563	3300006804	Agricultural Soil	GGVDVRDPNFTRLNGGFSSLLGDLDSADLAPTQPMITAATEMQQALTKLLADWETFKTTNVAAVNAQLRVANQPVLNP*
Ga0075436_1011387882	3300006914	Populus Rhizosphere	LMEHLQNADLAPTIPMTTAARELQQTLTKLMTAWTDLRTRDIAAINEQLRAANQPALNP*
Ga0079219_118146231	3300006954	Agricultural Soil	AVAIGGEGRSDASSPGLPGGTIDVREPNLTRLNNGFSALLDTLQDADLAPTQPMVAAASELQKTLAKLMADWDQLKAKDVAAMNEQLRAANQPVLNP*
Ga0105245_130938022	3300009098	Miscanthus Rhizosphere	EGTSPGLPGGTIDVRDPNLTRLNGGFSSLLEHLQSADMAPTDPMVTAATELQKALKKLLADWQTFKTTDVAAINQRLRAANQPLLNP*
Ga0105243_105697343	3300009148	Miscanthus Rhizosphere	EGRSDASSPGLPGGTIDMREPNLTRLNNGFSAMLDHLQDADLAPTEPMVTAATELQKVLTKLMADWDQFKTKDVAAINEQLRAANQPVLNP*
Ga0075423_107834243	3300009162	Populus Rhizosphere	AGEGRGEGPGGGTIDVREPNLTKLNNGFSSLLEHLQSADLAPTQPMVSASFELQKVLTKLLADWEQLKRDVVPINEQLQRSNKAPLIVK*
Ga0075423_126021322	3300009162	Populus Rhizosphere	ETNLTRLNGGFSSLIEQLQNADLAPTMPMITAATESQKTLTRLLASWNELKTKDVAAINEQLRAANQPPLNP*
Ga0105241_109886211	3300009174	Corn Rhizosphere	HLQSADMAPTQPMLTAASELQKNLQKLLMDWETFKTTDVAAINQQLRAANQPILNP*
Ga0105241_122232371	3300009174	Corn Rhizosphere	PNLTRLNGGFSSLLEQLQSADLAPTQPMVSASFELQKVLLKLLVDWENLKSNEITAINGQLRAANQPPLTF*
Ga0105241_125448582	3300009174	Corn Rhizosphere	LLDDLQSADVAPTQAMLTASSELQKTLKKLLADWENLKTTEVAAINERLRAANKPVLNP*
Ga0105248_110519443	3300009177	Switchgrass Rhizosphere	QSADMAPTQPMLTAASELQKNLQKLLMDWETFKTTDVAAINQQLRAANQPVLKP*
Ga0105248_118965722	3300009177	Switchgrass Rhizosphere	LTRLNNGFSSLIEHIQTADLAPTVPMVTAATELQKVLTKLMEDWDQLKTKDVAAINEQLRAANQPPLNP*
Ga0105249_108192203	3300009553	Switchgrass Rhizosphere	GEGRGDASSPGLPGGTIDMREPNLTRLNNGFSSLIEHLQTADLAPTVPMVTAATELQKVLTKLMADWDQLKTKDVAAINVQLRAANQPPLNP*
Ga0126307_115475791	3300009789	Serpentine Soil	RLNDGFSSLIEHLQNADLAPTAPMVSAGSELQKVLARLLEDWNTLKAKDVTAINEQLRAANQPVLKL*
Ga0126313_113308312	3300009840	Serpentine Soil	ADVAPTVPMVTAATELQRILSKLLGDWDQFKTKDVVAINEQLRAANQPALNP*
Ga0126305_101134193	3300010036	Serpentine Soil	GFTSLIDHLQNADDAPTLPMVTAATELQKVLTKLLGDWEQLKAKDVAAINVELRAANQPPLTP*
Ga0126314_103826723	3300010042	Serpentine Soil	DVREPNLTRLNNGFSSLLEHLQSADLAPTQQMVSASFELQGVLMKLLADWENLKSTEIAAINRQLRAANQPALTF*
Ga0126382_120805051	3300010047	Tropical Forest Soil	NNGFSSLLEHLQTADLAPTVPMTTAASELQKVQTRLLADWSQLKTKDVAAINEQLRAANQPPLNP*
Ga0126306_105888333	3300010166	Serpentine Soil	SSLIEHLQSADVAPALPIVTAATELQKTLATLMGEWNQLKTKDVAAINEQLRAANQPVLNP*
Ga0134128_115457651	3300010373	Terrestrial Soil	TRLNGGFSSLLEHLQSADMAPTQPMLTAASELQKNLQKLLMDWETFKTTDVAAINQQLRAANQPVLNP*
Ga0105239_112644371	3300010375	Corn Rhizosphere	EGRGDGPGGGTIDVREPNLTRLNGGFSSLLEDLQSADLAPTQPMVNASFELQKVLLKLMADWENLKANEIAAINGQLRAANQPPLTF*
Ga0134127_108906833	3300010399	Terrestrial Soil	GEGRGDASSPGLPGGAIDMREPNLTRLNNGYSSLIEHLQTADLAPTQPMVTAATELQKTLAKLMADWDQLKTKDVAAINQQLRAANQPLLNP*
Ga0134127_113746591	3300010399	Terrestrial Soil	SADMAPTEPMVTAATELQKALKKLLADWQTFKTTDVAAINRQLRAANQPLLNP*
Ga0134127_119901501	3300010399	Terrestrial Soil	IDTRDPNLTRLNGGFSSLLEHLQSADMAPTQPMLTASSELQRTLKKLLSDWETFKTTDVAAMNQQLRAANQPVLNP*
Ga0134127_135472542	3300010399	Terrestrial Soil	IEHLQSADRAPTQPMLTAASELQKTLKKLLSDWETFKTTDVAAINEQLRAANKPVLNP*
Ga0134122_113183111	3300010400	Terrestrial Soil	GGGGRSDASSPGLPGGTIDMREPNLTRLNNGFSAMLDHLQDADLAPTEPMVVAATELQKTLVKLMEDWNQFKSKDVAAINEQLRAANQPVLNP*
Ga0157299_100955332	3300012899	Soil	EGRGEGTSPGLPGGTIDVRDPNLTRLNGGFSSLLEHLQSADMAPTEPMVTAATELQKVLKKLLADWQTFKTTDVVAINQQLRAANQPLLNP*
Ga0157378_126610572	3300013297	Miscanthus Rhizosphere	DGPGGGTIDVREPNLTKLNNGFSSLLEHLQSADLAPTQPMVNASFELQKVLTKLLADWEQLKREVVPINEQLLRSNQAPLIVK*
Ga0157372_117672981	3300013307	Corn Rhizosphere	IHGPGPLPDALAALDKKLTALGGKGRCDGPGGSTIDVREPNLTKLNNGFSSLLEHLQSADLAPTQPMVNASFELQNVLTKLLADWEQLKRDVVPINEQLQRSNQAPLIVK*
Ga0163163_106731821	3300014325	Switchgrass Rhizosphere	AAAIGGEGRGDASSPGLPGGTIDMREPNLTRLNNGYSSLIEHLQTADLAPTVPMVTAATELQKVLTKLMSDWDQLKTKDVAAINQQLRAANQPVLKP*
Ga0163163_115736981	3300014325	Switchgrass Rhizosphere	NLTRLNGGFASLLENLQSADLAPTQPTVVAATELQKALTKLLADWETFKTKDLTAINQQLRAANQPVLNP*
Ga0157380_120887861	3300014326	Switchgrass Rhizosphere	DLSPTVPMVTAATELQKVLTKLMSDWDQLKTKDIATINEQLRAANQPVLNP*
Ga0157380_129123861	3300014326	Switchgrass Rhizosphere	IDTRDPNLTRLNGGFSSLLEHLKSADMAPTQPILTAASELQKTMQKLLADWETLKTTDVAAINVQMRAANQPVLNP*
Ga0157377_106175181	3300014745	Miscanthus Rhizosphere	SSLLDNLQDADLAPTVPMVTASAELRKVLTQLLSDWNQLKSKDVAAINEQLRAANQPVLNP*
Ga0157377_106661101	3300014745	Miscanthus Rhizosphere	LQSADAAPTQPMLTAGGELQRTLKRLLSDWEALKKTDVAAINEQLRAANQPVVNP*
Ga0157379_105709401	3300014968	Switchgrass Rhizosphere	GFSSLLEHLQSADMAPTEPMVTAASELQKVLKKLLADWETFKTMDVAAINQQLRAANQPLLKP*
Ga0182007_100926823	3300015262	Rhizosphere	GDGGGPGGPIDVRDPNLTRLNGGFSSLLEDLQSADLAPTQPTITGATELQKALTKLLADWETLKTTDVTAINQQLRAANQPVLNP*
Ga0190274_113604743	3300018476	Soil	LNALDKKAAAIAGEGRGEGGPGGAIDVRDPNLTRLNGGFSSLLDHLQNADLAPTQPMVTAATELQKTLTTLLDAWRAFHTVDVTTINLQLKAANKPLLTP
Ga0207710_105796911	3300025900	Switchgrass Rhizosphere	DTRDSNLTRLNGGFSSLLEHLQSADMAPTQPMLTAASELQKNLQKLLMDWETFKTTDVAAINQQLRAANQPVLKP
Ga0207647_108086162	3300025904	Corn Rhizosphere	EPRKRLPAHARVDQAPTEPMVTAATELQKILTKLLADWNQLKTKDLAAINEQLRAANQPVLNP
Ga0207643_111171502	3300025908	Miscanthus Rhizosphere	NNGFSAMLDHLQDADLAPTEPMVTAATELQKVLTKLMADWDQFKTKDVATINEQLRAANQPVLNP
Ga0207654_112322551	3300025911	Corn Rhizosphere	LLDDLQSADVAPTQAMLTASSELQKTLKKLLADWENLKTTEVAAINERLRAANKPVLNP
Ga0207707_101449371	3300025912	Corn Rhizosphere	QSADLAPTQPTITAATELQKALTKLLADWETLKTTDVTAINQQLRAANQPVLNP
Ga0207695_117091941	3300025913	Corn Rhizosphere	PAFDKRALALAGEGRGDGPGGGIIDVREPNLTKLNNGFSSLLEHLQSADLAPTQPMVNASFELQKVLTKLLADWEQLKRDVVPINEQLLRSNQAPLIVK
Ga0207649_107323123	3300025920	Corn Rhizosphere	SSLLEHLQTADLAPTEPMVTAAAELQKIRQKLMTDWNQLKSKDVATINEQLRTANQPVLN
Ga0207644_110689952	3300025931	Switchgrass Rhizosphere	RGDGGAPGGSIDTRDPNLTRMNGGFSSLLEHLQSADMAPTQPMLTAASELQKTVQKLLADWETFKTTDVAAINQQLRAANQPILNP
Ga0207691_104129943	3300025940	Miscanthus Rhizosphere	LNNGFSSLLEHLQTADLPPTVPMTTAAAELQKTLTKLLADWNQFKTKDVVAINEQLRAANQPPLNP
Ga0207679_101213403	3300025945	Corn Rhizosphere	EHLQSADMAPTQPMLTAASELQKNLQKLLMDWETFKTTDVAAINQQLRAANQPVLKP
Ga0207679_107727173	3300025945	Corn Rhizosphere	DKKAAAIAGEGRGDGPGGGTIDVREPNLTRLNGGLSSLLDDLQSADLAPTQPMVNASFELQKVLLKLLADWENLKSNEITAINGQLRASNQPPLTF
Ga0207651_107830261	3300025960	Switchgrass Rhizosphere	NLTRLNNGFSALLDHLQEPDLAPTEPMVVAATELQKTLTKLMADWNQLKTKDVAAINEQLRAANQTVLNP
Ga0207651_118397182	3300025960	Switchgrass Rhizosphere	ADLAPTVPMVTAATELQKVLTKLMADWDQLKTKDVAAINVQLRAANQPPLNP
Ga0207703_102719881	3300026035	Switchgrass Rhizosphere	GRGEGTSPGLPGGTIDVRDPNLTRLNGGFSSLLEHLQSADMAPTDPMVTAATELQKALKKLLADWQTFKTTDVGAINRQLRAANQPLLNP
Ga0207703_104639843	3300026035	Switchgrass Rhizosphere	GFSSLIEHLQTADLAPTQPMVTAAAELQKVLTKLMADWDQLKTKDVAAINVQLRAANQPPLNP
Ga0207703_105786811	3300026035	Switchgrass Rhizosphere	RAAAIGGEGRGDASSPGLPGGTIDMREPNLTRLNNGFSSLIEHLQTADLAPTVPMTTAAAELQKVLTKLMADWSQFKTKDVAAINEQLRAANQPVLNP
Ga0207703_106386993	3300026035	Switchgrass Rhizosphere	GTIDMREPNLTRLNNGFSALLDHLQDPDLAPTEPMVVAATELEKTLTKLMADWNQLKTKDVAAINEQLRAANQTVLNP
Ga0207641_105501831	3300026088	Switchgrass Rhizosphere	PNLTRLNGSFSSLLEHLQSADMAPTRSMQEASIELQKALKKLLADWEQLQTIDVTAINQQLRAANKPVLKL
Ga0207641_117944042	3300026088	Switchgrass Rhizosphere	SSLIEHLQTADLAPTVPMVTAATELQKVLTKLMSDWDQLKTKDVAAINEQLRAANKPVLN
Ga0207648_102943581	3300026089	Miscanthus Rhizosphere	SPGLPGGTIDMREPNLTRLNNGFSAMLDHLQDADLAPTEPMITAASELQKTLEKLMADWNQLKAKDVAAMNEQLRAANQPVLNP
Ga0207676_113867801	3300026095	Switchgrass Rhizosphere	RMNNGFSAMLDHLQDADLAPTEPMVAAATELQKTLAKLLADWDQFKTKDVAAINEQLRAANQPVLNP
Ga0207698_114466111	3300026142	Corn Rhizosphere	TIDMREPNLTRLNNGYSSLIEHLQTADMAPTEPMVTAATELQKILTKLLADWNQLKTKDLAAINEQLRAANQPVLNP
Ga0268265_108764371	3300028380	Switchgrass Rhizosphere	GTIDMREPNLTRLNNGFSSLIEHLQTADLAPTQPMVIAATELQKTLAKLMSDWDQLKTKDIAAINQQLRAANQPPLNP
Ga0268265_120536121	3300028380	Switchgrass Rhizosphere	PGGTIDLRDPNFTRLNGSFSSQLEHLQSADLPPTVPMVTASTELNKALTKLLADWETFKKKDVAAMNEQLRAANQPALNP
Ga0268264_105083613	3300028381	Switchgrass Rhizosphere	GLPGGTIDVRDPNLTRLNGGFSSLLEHLQSADMAPTDPMVTAATELQKALKKLLADWQTFKTTDVAAINQRLRAANQPLLNP
Ga0268264_119324961	3300028381	Switchgrass Rhizosphere	RLNNGYSSLIEHLQTADLAPTQPMVTAATELQKTLAKLMADWDQLKTKDVAAINQQLRAANQPLLNP
Ga0307408_1006712943	3300031548	Rhizosphere	SLMEHLQNADLAPTVPMTTAAAELQKVQARLLADWNQLKTRDVAAINEQLRAANQPPLNP
Ga0307408_1011984242	3300031548	Rhizosphere	PNLTRLNGGFSSLIEHLQSADLPPTLPMVTAATELQKTLAKLMGDWNELKTKDVTAINEQLRTANQPVLNP
Ga0310813_108691331	3300031716	Soil	APTEPMVTAATGLQQALTKLLADWDVLKKTNVTAINEQLKAANKPVLNP
Ga0310813_122966422	3300031716	Soil	PGGTIDMREPNLTRLNNGYSSLIEHLQTADLAPTVPMITAATELQKTLTKLMSDWDQLKTKDVATINEQLRAANQPVLNP
Ga0307469_108756271	3300031720	Hardwood Forest Soil	PNLTRLNGGFSSLLEHLQSADLAPTQPTLTASSELQKTLKKLLADWEALKTTDVAAINEQLRAANQPVLNP
Ga0307410_109923241	3300031852	Rhizosphere	MEHLQNADLAPTVPMTTAAAELQKVQARLFADWNQLKTRDVAAINEQLRAANQPPLNP
Ga0310812_102014413	3300032421	Soil	LQNADLAPTQPMVTASTEMQKALTKLLADWETFKTKDIPAINEQLRAANQPVLNP
Ga0310810_104046811	3300033412	Soil	EGRGDGGGPGGPIDVRDPNLTRLNGGFSSLLEDLQSADLAPTQPTITAATELQKALTKLLADWETLKTTDVTAINQQLRAANQPVLNP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084697

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences