Metagenome / Metatranscriptome Family F084684

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Overview

Basic Information
Family ID	F084684
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	51 residues
Representative Sequence	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDIGHAVVI
Number of Associated Samples	97
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	52.25 %
% of genes near scaffold ends (potentially truncated)	95.54 %
% of genes from short scaffolds (< 2000 bps)	89.29 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.071 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.036 % of family members)
Environment Ontology (ENVO)	Unclassified (38.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (42.857 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.05% β-sheet: 0.00% Coil/Unstructured: 78.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01695	IstB_IS21	6.25
PF04463	2-thiour_desulf	3.57
PF13408	Zn_ribbon_recom	2.68
PF00440	TetR_N	1.79
PF02661	Fic	1.79
PF01348	Intron_maturas2	1.79
PF01610	DDE_Tnp_ISL3	1.79
PF03441	FAD_binding_7	0.89
PF00171	Aldedh	0.89
PF13374	TPR_10	0.89
PF02824	TGS	0.89
PF01272	GreA_GreB	0.89
PF01061	ABC2_membrane	0.89
PF00672	HAMP	0.89
PF00355	Rieske	0.89
PF13518	HTH_28	0.89
PF00665	rve	0.89
PF01636	APH	0.89
PF09661	DUF2398	0.89
PF00903	Glyoxalase	0.89
PF04879	Molybdop_Fe4S4	0.89
PF13359	DDE_Tnp_4	0.89
PF00072	Response_reg	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	6.25
COG1683	Uncharacterized conserved protein YbbK, DUF523 family	Function unknown [S]	3.57
COG3464	Transposase	Mobilome: prophages, transposons [X]	1.79
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.89
COG0415	Deoxyribodipyrimidine photolyase	Replication, recombination and repair [L]	0.89
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.89
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.89
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.89
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.89
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.89
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.89
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
All Organisms	root	All Organisms	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
cellular organisms	root	All Organisms → cellular organisms	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	23.21 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.32 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.68 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.68 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.89 %
Natronospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Natronospirillaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.68 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.68 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Natronospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Natronospirillaceae → Natronospirillum	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.68 %
Phytohabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.89 %
Natronospirillum operosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Natronospirillaceae → Natronospirillum → Natronospirillum operosum	0.89 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Phytohabitans rumicis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Streptomyces bingchenggensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bingchenggensis	0.89 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.89 %
Natronospirillum operosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Natronospirillaceae → Natronospirillum → Natronospirillum operosum	0.89 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Phytohabitans rumicis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.79 %
Streptomyces bingchenggensis BCW-1	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bingchenggensis → Streptomyces bingchenggensis BCW-1	0.89 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.89 %
Natronospirillum operosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Natronospirillaceae → Natronospirillum → Natronospirillum operosum	0.89 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig43017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	901	Open in IMG/M
3300000955\|JGI1027J12803_102721357	Not Available	691	Open in IMG/M
3300004091\|Ga0062387_101745072	Not Available	507	Open in IMG/M
3300005338\|Ga0068868_101995196	Not Available	551	Open in IMG/M
3300005354\|Ga0070675_100748464	Not Available	892	Open in IMG/M
3300005445\|Ga0070708_101418260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	648	Open in IMG/M
3300005468\|Ga0070707_100792799	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300005712\|Ga0070764_10550522	Not Available	699	Open in IMG/M
3300005950\|Ga0066787_10044236	Not Available	841	Open in IMG/M
3300006059\|Ga0075017_101641538	Not Available	508	Open in IMG/M
3300006172\|Ga0075018_10150586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1073	Open in IMG/M
3300006577\|Ga0074050_11983701	Not Available	777	Open in IMG/M
3300006954\|Ga0079219_11553625	Not Available	603	Open in IMG/M
3300009101\|Ga0105247_10997726	All Organisms → cellular organisms → Bacteria → Terrabacteria group	654	Open in IMG/M
3300009524\|Ga0116225_1167017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	1001	Open in IMG/M
3300009698\|Ga0116216_10777814	Not Available	574	Open in IMG/M
3300010321\|Ga0134067_10459590	Not Available	521	Open in IMG/M
3300010366\|Ga0126379_13463141	Not Available	528	Open in IMG/M
3300010876\|Ga0126361_11086286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	2229	Open in IMG/M
3300012205\|Ga0137362_11654701	Not Available	527	Open in IMG/M
3300012210\|Ga0137378_10368599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1334	Open in IMG/M
3300012210\|Ga0137378_10505598	Not Available	1115	Open in IMG/M
3300013100\|Ga0157373_11388849	Not Available	534	Open in IMG/M
3300013297\|Ga0157378_10417774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1325	Open in IMG/M
3300014150\|Ga0134081_10326773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	557	Open in IMG/M
3300016270\|Ga0182036_11446802	Not Available	576	Open in IMG/M
3300016294\|Ga0182041_11974307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bingchenggensis → Streptomyces bingchenggensis BCW-1	543	Open in IMG/M
3300016357\|Ga0182032_11129732	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300016445\|Ga0182038_11797656	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300017821\|Ga0187812_1020785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2265	Open in IMG/M
3300017821\|Ga0187812_1093853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	983	Open in IMG/M
3300017822\|Ga0187802_10295621	Not Available	631	Open in IMG/M
3300017928\|Ga0187806_1148679	Not Available	772	Open in IMG/M
3300017932\|Ga0187814_10280365	Not Available	635	Open in IMG/M
3300017932\|Ga0187814_10437537	Not Available	512	Open in IMG/M
3300017939\|Ga0187775_10444922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	545	Open in IMG/M
3300017940\|Ga0187853_10517192	Not Available	520	Open in IMG/M
3300017955\|Ga0187817_10047180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2648	Open in IMG/M
3300017959\|Ga0187779_11158149	Not Available	542	Open in IMG/M
3300017961\|Ga0187778_11038343	Not Available	569	Open in IMG/M
3300017961\|Ga0187778_11188929	Not Available	534	Open in IMG/M
3300017973\|Ga0187780_10630305	Not Available	771	Open in IMG/M
3300018058\|Ga0187766_11280212	Not Available	534	Open in IMG/M
3300018086\|Ga0187769_10870482	Not Available	681	Open in IMG/M
3300018089\|Ga0187774_10886702	Not Available	611	Open in IMG/M
3300018090\|Ga0187770_11043132	Not Available	658	Open in IMG/M
3300018431\|Ga0066655_10100751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1618	Open in IMG/M
3300019879\|Ga0193723_1157536	Not Available	603	Open in IMG/M
3300025920\|Ga0207649_10919109	Not Available	686	Open in IMG/M
3300025941\|Ga0207711_11235117	Not Available	689	Open in IMG/M
3300025945\|Ga0207679_11348443	Not Available	654	Open in IMG/M
3300026316\|Ga0209155_1213787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300027645\|Ga0209117_1200765	Not Available	503	Open in IMG/M
3300027787\|Ga0209074_10104685	Not Available	962	Open in IMG/M
3300027991\|Ga0247683_1027249	Not Available	525	Open in IMG/M
3300028828\|Ga0307312_10071008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2113	Open in IMG/M
3300028884\|Ga0307308_10284817	Not Available	792	Open in IMG/M
3300028885\|Ga0307304_10264335	Not Available	752	Open in IMG/M
3300030509\|Ga0302183_10415970	Not Available	514	Open in IMG/M
3300030524\|Ga0311357_11033415	Not Available	721	Open in IMG/M
3300030707\|Ga0310038_10499373	Not Available	515	Open in IMG/M
3300031544\|Ga0318534_10269047	Not Available	982	Open in IMG/M
3300031549\|Ga0318571_10034356	Not Available	1431	Open in IMG/M
3300031572\|Ga0318515_10108669	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300031572\|Ga0318515_10234928	Not Available	983	Open in IMG/M
3300031679\|Ga0318561_10274055	Not Available	921	Open in IMG/M
3300031681\|Ga0318572_10716902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Natronospirillaceae → Natronospirillum → Natronospirillum operosum	595	Open in IMG/M
3300031682\|Ga0318560_10730649	Not Available	535	Open in IMG/M
3300031719\|Ga0306917_11395909	Not Available	540	Open in IMG/M
3300031723\|Ga0318493_10418476	Not Available	734	Open in IMG/M
3300031751\|Ga0318494_10018246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3442	Open in IMG/M
3300031751\|Ga0318494_10513841	Not Available	698	Open in IMG/M
3300031771\|Ga0318546_10074338	Not Available	2178	Open in IMG/M
3300031782\|Ga0318552_10007871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	4320	Open in IMG/M
3300031782\|Ga0318552_10666667	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031793\|Ga0318548_10213414	Not Available	948	Open in IMG/M
3300031797\|Ga0318550_10223131	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300031798\|Ga0318523_10188542	Not Available	1029	Open in IMG/M
3300031805\|Ga0318497_10107430	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300031832\|Ga0318499_10125158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1000	Open in IMG/M
3300031859\|Ga0318527_10212616	Not Available	819	Open in IMG/M
3300031859\|Ga0318527_10442893	Not Available	554	Open in IMG/M
3300031890\|Ga0306925_10787141	Not Available	988	Open in IMG/M
3300031896\|Ga0318551_10359061	Not Available	825	Open in IMG/M
3300031897\|Ga0318520_10288791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	986	Open in IMG/M
3300031939\|Ga0308174_11243705	Not Available	636	Open in IMG/M
3300031941\|Ga0310912_10222636	Not Available	1447	Open in IMG/M
3300031942\|Ga0310916_11551286	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031954\|Ga0306926_11783087	Not Available	699	Open in IMG/M
3300032008\|Ga0318562_10340476	Not Available	872	Open in IMG/M
3300032008\|Ga0318562_10745611	Not Available	562	Open in IMG/M
3300032009\|Ga0318563_10078959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1718	Open in IMG/M
3300032041\|Ga0318549_10463509	Not Available	570	Open in IMG/M
3300032043\|Ga0318556_10285551	Not Available	862	Open in IMG/M
3300032043\|Ga0318556_10342838	Not Available	781	Open in IMG/M
3300032043\|Ga0318556_10607531	Not Available	570	Open in IMG/M
3300032059\|Ga0318533_10614362	Not Available	798	Open in IMG/M
3300032059\|Ga0318533_11449560	Not Available	501	Open in IMG/M
3300032065\|Ga0318513_10035336	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300032066\|Ga0318514_10270501	Not Available	896	Open in IMG/M
3300032180\|Ga0307471_102705361	Not Available	629	Open in IMG/M
3300032515\|Ga0348332_13604237	Not Available	532	Open in IMG/M
3300032770\|Ga0335085_12060519	Not Available	577	Open in IMG/M
3300032805\|Ga0335078_10015857	All Organisms → cellular organisms → Bacteria	11184	Open in IMG/M
3300032828\|Ga0335080_10151855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2564	Open in IMG/M
3300032828\|Ga0335080_10433494	Not Available	1405	Open in IMG/M
3300032828\|Ga0335080_11770181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300032892\|Ga0335081_11102577	Not Available	914	Open in IMG/M
3300033134\|Ga0335073_10329485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1818	Open in IMG/M
3300033158\|Ga0335077_10155182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2621	Open in IMG/M
3300033290\|Ga0318519_10312939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	921	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.96%
Host-Associated	Host-Associated	7.14%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.14%
Aquatic	Environmental → Aquatic	9.82%
Plants	Host-Associated → Plants	7.14%
Modeled	Engineered → Modeled	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.46%
Freshwater	Environmental → Aquatic → Freshwater	8.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.25%
Sediment	Environmental → Aquatic → Sediment	1.79%
Peat	Environmental → Terrestrial → Peat	1.79%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.07%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.04%
Loam	Environmental → Terrestrial → Soil → Loam	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.04%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.04%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027991	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK24	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0017.00003320	2166559005	Simulated	MLPAGPASSAARVWDVAEPGQALLAVLFPHLAGLRVHGWKTWETR
JGI1027J12803_1027213571	3300000955	Soil	MLPAGPASSAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDTGDAVMIAAS
Ga0062387_1017450721	3300004091	Bog Forest Soil	LPPQSVMPPAGPASAPRLAWDVSGQGGSLLTALFPHLAGLRVHRVEDIGHAVVIS
Ga0068868_1019951961	3300005338	Miscanthus Rhizosphere	LPDQSVMLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDAGVAVMIAASCR
Ga0070675_1007484641	3300005354	Miscanthus Rhizosphere	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDAGVAVMIAASCRA
Ga0070708_1014182601	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LPPQSVMPPAGAAIAPRLVWDVSEQGESLLTALFPHLAGLRVHRVEDIGHAVVISASCRAGGACCPRCGQESA
Ga0070707_1007927993	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPPAGTAIAPRLAWDVSEQGESLLTALFPHLAGLRVHRVEDIGHAVVISAS
Ga0070764_105505222	3300005712	Soil	MPPAGAASAPRLAWDVCEQGECLLTVLFPHLAGLRVHRVEDIVHAVVISASCRAGGACCP
Ga0066787_100442362	3300005950	Soil	LPPQSATPPAGAASPAARIVWTPSGQGETLLAMLFPHLAGL
Ga0075017_1016415381	3300006059	Watersheds	MLPAGPASCAARVVWDVCEQGQALLAVLFPHLAGLRVHRVED
Ga0075018_101505862	3300006172	Watersheds	LPPQSATPPAGAASPAARIVWTPSGQGETLLAMLFPHLAGLRVHRVEELAGAVVIYATCRA*
Ga0074050_119837012	3300006577	Soil	MLPAGPASSAARVWDVAEPGQALLAVLFPHLAGLRVHRVEDVGDAVMIAASCQADSAC
Ga0079219_115536251	3300006954	Agricultural Soil	MLPAGPASSAARVLWDVSEQGQALLAVLFPHLAGLRVHRVEDTGDAVMIAASCRADAA
Ga0105247_109977262	3300009101	Switchgrass Rhizosphere	MPPAGAASVPRLVWDVSELGESLLTALFPHLAGLRLCRVEDT
Ga0116225_11670171	3300009524	Peatlands Soil	MPPAGAASAPRLVWEVSELGESLLTALFPHLAGLRVHRVEDIGDAVVIS
Ga0116216_107778141	3300009698	Peatlands Soil	MPPAGAASAPRLAWDVSEHGESLLTALFPHLAGLRVHHVEDI
Ga0134067_104595902	3300010321	Grasslands Soil	MLPAGSASSPDQVPAGAGPGGLLAVLFPHLAGLRVDRVEDA
Ga0126379_132521372	3300010366	Tropical Forest Soil	MSLPAAATAAIRVWEPSEQGEALLALLFPHLAGLRVYRVEDTGDAVVIWASS
Ga0126379_134631411	3300010366	Tropical Forest Soil	MLPAGPASPAARVVWDVPEQGQALLAVLFPHLAGLRVHRVEDTGEAVMIAASCQVGSASCPR
Ga0126361_110862863	3300010876	Boreal Forest Soil	MPPAGAASTPRLVWDVSEQSESLLTALFPHLAGLRVHRVEDIVHAVVISASCRAGGASCP
Ga0137362_116547011	3300012205	Vadose Zone Soil	LPPQSATPPAGTASPAARVVWEPSEQGETLLAMLFPHLAGLRVHR
Ga0137378_103685991	3300012210	Vadose Zone Soil	LPPQSVIPPAGAASAPRLAWDVSEQGESLLTALFPHLAGLACTAWKTSGT
Ga0137378_105055981	3300012210	Vadose Zone Soil	LPDQSVKLPAGPASSAARVVWDVSEQGRALLAVLFPHLAGLRVHRV
Ga0157373_113888491	3300013100	Corn Rhizosphere	MLPAGPASSAARVLWDVSEQGQALLAVLFPHLAGLRVHRVEDTGDAVMIA
Ga0157378_104177741	3300013297	Miscanthus Rhizosphere	MLPAGPASPAARVVWDVGEQGQALLAVLFPHLAGLRV
Ga0134081_103267731	3300014150	Grasslands Soil	MPPVGAASVPRLVWDVSELGESLLTVLFPHLAGLRLGRVEDTGDAVVISASSRAG
Ga0182036_114468021	3300016270	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDRGEAVVIWAS
Ga0182041_119743071	3300016294	Soil	MPPAGVRLVWEVSEPGESLLTALFPHLAGLRVHRVEDIGHAVVIWASCRAVQACCPRC
Ga0182032_111297321	3300016357	Soil	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDTGEAVMIAASCQAGSAS
Ga0182038_117976562	3300016445	Soil	MPPAGPAGSPARAIWDISEQGQALLAVLFPHRAGLCVHRVADAGNAVLIVASCQAGA
Ga0187812_10207852	3300017821	Freshwater Sediment	LPDQSVMLPAGPASSARAWEAGEQGEALLAMLFPHLAGLRVHRVEDTGMRW
Ga0187812_10938532	3300017821	Freshwater Sediment	LPPQSATPPAGTASPAARVVWEPSEQGETLLAMLFP
Ga0187802_102956212	3300017822	Freshwater Sediment	MLPAGPGSSAARVVWDVSEQGQALLAVLFPHLAGLRVHRIEDVTDAVIIVASCRAEAACC
Ga0187806_11486791	3300017928	Freshwater Sediment	MLPAGPASSAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDTGDAVMIAA
Ga0187814_102803651	3300017932	Freshwater Sediment	LPPQSVMPPAGPASSPARAIWDVSEQGQALLAVLFPHLAGLRVHRIEDVTDAVIIVASCRAEAACCPRC
Ga0187814_104375371	3300017932	Freshwater Sediment	LPPQSATLPGGTASPAARVVWEPCGQGETLLAMLFPHLAGLRVHRVEDTGEAVVIYATRR
Ga0187775_104449222	3300017939	Tropical Peatland	MPPAGARLVWDVSEPGESLLTALFPHLAGLRVHRVEDIGHAVVIWASCRAVQ
Ga0187853_105171922	3300017940	Peatland	LPVQSAMPPVGAASSSCLVWEVSELGERLLTMLFPHLAGL
Ga0187817_100471803	3300017955	Freshwater Sediment	LPPQSATLPGGTASPAARVVWEPCGQGETLLAMLFPHLA
Ga0187779_111581491	3300017959	Tropical Peatland	MPPAGPASSPARAIWDVSEQGQTLLAVLFPHLAGLRVHRIE
Ga0187778_110383431	3300017961	Tropical Peatland	MPPAGPASSPARAIWDISEQGQALLAVLFPHLAGLRVHRVEDTGDA
Ga0187778_111889291	3300017961	Tropical Peatland	MPPVEAASVPCLVWDVSELGESLLMVLFPHLAGLRLRRVEDTGDAVVISASSRAGQA
Ga0187780_106303052	3300017973	Tropical Peatland	LPPQSATPPAGTASPAARVVWEPCERGEMLLAMLFPHLAGLRVHRVEDTG
Ga0187766_112802121	3300018058	Tropical Peatland	LPPQSAMPPAGAASVPRLVWDVSELGESLLTVLFPHLAGLRLCRVEDPGDAVVISASSRA
Ga0187769_108704821	3300018086	Tropical Peatland	LSPQSDMPAGVPCLVWEASEPGESLLAALFPHLAGLRVHRVEDRGDAVVI
Ga0187774_108867021	3300018089	Tropical Peatland	MPPGGMPSPAARVVWEPSEQGEVLLAMLFPHLAGLRVHRVEDTGGAVVIYATR
Ga0187770_110431321	3300018090	Tropical Peatland	LPDQSVALPAGPVSSAARVVWDVCEQGQALLAVLFPHLAGLRVHRVEDAGDAVVIVA
Ga0066655_101007511	3300018431	Grasslands Soil	MLPAGPASSAARVIWDVSEQGQALLAVLFPHLAGLRVHRVEDAGDAVVIVA
Ga0193723_11575362	3300019879	Soil	LPDQSVMLPAGPASSAVRVWDVAEQGQLLLAVLFPHLAGLRVHRVEDAGDAVMIAASCQAGSACCP
Ga0207649_109191091	3300025920	Corn Rhizosphere	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRV
Ga0207711_112351171	3300025941	Switchgrass Rhizosphere	MLPAGPASSAARVWDVAEPGQALLAMLFPHLAGLRVH
Ga0207679_113484431	3300025945	Corn Rhizosphere	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLR
Ga0209155_12137872	3300026316	Soil	MPPVGAASVPRLVWDVSELGESLLTVLFPHLAGLRLGRVE
Ga0209117_12007651	3300027645	Forest Soil	LPVQSAMPPVGAASSSCLVWEVSELGERLLTMLFPHLAGLRVHRMEDAGDAVVISASCRATSACCPRCGTPS
Ga0209074_101046851	3300027787	Agricultural Soil	LPPQSVMPPAGAASVPRLVWDVCEQCEGLLTALFPHLAGLRVHRVEDIVHAVVISASCRAGGACCPRCGQESARVH
Ga0247683_10272492	3300027991	Soil	MLPAGPASSAARVLWDVSEQGQALLAVLFPHLAGLRVHRVEDT
Ga0307312_100710081	3300028828	Soil	MLPAGPVSSAARVVWDVSEQGQALLAVLFPHLAGLRVHRVE
Ga0307308_102848173	3300028884	Soil	LPDQSVMLPAGPASPAARVVWDVSEQGQALLAVLFP
Ga0307304_102643352	3300028885	Soil	MLPAGPASSAARVWDVAEPGQLLLAVLFPHLAGLRVHRVEDAGD
Ga0302183_104159702	3300030509	Palsa	LPDQSAMLPAGPASSAARVIWNVSEQGQALLAVLFP
Ga0311357_110334151	3300030524	Palsa	MPPAGAASVPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDIVHA
Ga0310038_104993731	3300030707	Peatlands Soil	MPPVGAASVPRLVWDVSELGESLLTVLFPHLAGLRLRRVEDTGDAVVISASSRAGQAC
Ga0318534_102690471	3300031544	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVED
Ga0318571_100343561	3300031549	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVH
Ga0318515_101086693	3300031572	Soil	MPPAGAASVPRLVWDVSELGETLLTVLFPHLAGLRLRRVEDTGDAVVISASSRAG
Ga0318515_102349281	3300031572	Soil	MPPAGAVISPRLAWDVSEQGESLLTALFPHLAGLRVHRVEDIVHAVVISASCRAGGASC
Ga0318561_102740551	3300031679	Soil	MPPAGAASAPRLAWDVSEQGEALLTALFPHLAGLRVHRVEDIGHAVVISASCRPGGACCPRCGQGSAR
Ga0318572_107169021	3300031681	Soil	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDTGEAVMIAASCQAGSAG
Ga0318560_107306491	3300031682	Soil	LPPQSAMPPAGVRLVWEVSEPGESLLTALFPHLAGLRVHRVEDIGHAVVIWASCRAIQACCPR
Ga0306917_113959091	3300031719	Soil	MPPAGPASSPARVVWDVSEQGQALLAVLFPQLAGLRVH
Ga0318493_104184761	3300031723	Soil	MPPPGAASASRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDRGEAVVI
Ga0318494_100182461	3300031751	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDIGHAVVI
Ga0318494_105138411	3300031751	Soil	LPPQSVMPPAGPASSPARVVWDVSEQGQALLAVLFPQLAGLRVHRVED
Ga0318546_100743385	3300031771	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDIGHAVVISASCRAG
Ga0318552_100078711	3300031782	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDIGHAVVISASCRAGGACCPRCGQE
Ga0318552_106666672	3300031782	Soil	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDTGEAVMIAA
Ga0318548_102134141	3300031793	Soil	MPPAGAVISPRLAWDVSEQGESLLTALFPHLAGLRVHRVEDIGHAVVISASCRPGGACC
Ga0318550_102231311	3300031797	Soil	MPPAGAASVPRLVWDVSELGETLLTVLFPHLAGLRLRRVEDTGDAVVISASSRAGEAC
Ga0318523_101885421	3300031798	Soil	MPPAGAASAPRLAWDVSEQGEALLTALFPHLAGLRVHRVEDIGHAVVISASCRAGEA
Ga0318497_101074303	3300031805	Soil	MPPAGAASVPRLVWDVSELGETLLTVLFPHLAGLRLRRVEDTGDAVVI
Ga0318499_101251581	3300031832	Soil	MLPAGPASSAARIVWDVSEQGQALLAGLFPHLAGLRVHRVEDPGEAVMILASCRADA
Ga0318527_102126161	3300031859	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDIGHAVVISA
Ga0318527_104428932	3300031859	Soil	MPPAGAVISPRLAWDVSEQGESLLTALFPHLAGLRVHRVEDIGHAVVISASCRPGGACCPRCGRE
Ga0306925_107871412	3300031890	Soil	MLPAGPASSAARIVWDVSEQGQALLAVLFPHLAGLRVHRVEDPGE
Ga0318551_103590612	3300031896	Soil	MPPPGAASASRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDRGEAVVIWASCRAGTACC
Ga0318520_102887911	3300031897	Soil	MPPAGAVISPRLAWDVSEQGESLLTALFPHLAGLRVH
Ga0308174_112437051	3300031939	Soil	MLPAGPASPATRVVWDVGEQGQALLAVLFPHLAGLRVHRAEDAGDAVVIAASCQA
Ga0310912_102226361	3300031941	Soil	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDTGEAVMILASCRRMRRAARGAVR
Ga0310916_115512862	3300031942	Soil	MLPAGPASPAARVVWDVSEQGQALLAVLFPHLAGLRVHRVEDTGEAVMIA
Ga0306926_117830871	3300031954	Soil	MPPAGAVISPRLAWDVSEQGESLLTALFPHLAGLRVHRVEDIGHAVVISASCRPGGACCP
Ga0318562_103404762	3300032008	Soil	MLPAGPASSAARIVWDVSEQGQALLAGLFPHLAGLRVHR
Ga0318562_107456111	3300032008	Soil	MPPAGAASAPRLVWDVSEQGESLLTALFPHLAGLRVHRVEDIVHAVV
Ga0318563_100789593	3300032009	Soil	MPPAGAASAPRLAWDVSEQGEALLTALFPHLAGLRVHRVEDIG
Ga0318549_104635091	3300032041	Soil	MPPPGAASASRLVWDVSEQGESLLTVLFPHLAGLR
Ga0318556_102855512	3300032043	Soil	MPPAGAASAPRLAWDVSEQGEALLTALFPHLAGLRVHRVEDIGHAVVISASCRAG
Ga0318556_103428381	3300032043	Soil	MPSAGAASAARLVWDVSEQGESLLTVLFPHLAGLRVH
Ga0318556_106075311	3300032043	Soil	MLPAGPASSAARIVWDVSEQGQALLAVLFPHLAGLR
Ga0318533_106143621	3300032059	Soil	MPPAGAATAAVRVCEVSDQGQDLLAMLFPHLAGLRVHRVEDTGYAVVISASCRAQSARCL
Ga0318533_114495601	3300032059	Soil	MPPAGAASAPRLVWDVSEQGESLLTALFPHLAGLRVHRVEDIVHAVVISASCRAGGASC
Ga0318513_100353364	3300032065	Soil	MPPAGAASVPRLVWDVSELGETLLTVLFPHLAGLRLRRVEDTGDAVVISAS
Ga0318514_102705011	3300032066	Soil	MLPAGPASSAARIVWDVSEQGQALLAVLFPHLAGLRVHRVEDPGEAVMILASCRRMRRAARG
Ga0307471_1027053611	3300032180	Hardwood Forest Soil	LPDQSVMLPAGPASPAARVAWDVSEQGQALLAVLFPHLAGLRVHRVEDAGA
Ga0348332_136042371	3300032515	Plant Litter	MPPAGAASAPRLAWDVSEQGESLLTALFPHLAGLRVHRVED
Ga0335085_120605191	3300032770	Soil	MPPVGAASVPRLVWDVSELGESLLTVLFPHLAGLRLRRVEDTGDA
Ga0335078_1001585713	3300032805	Soil	LPDQFVMLPAGPASPAGRVVWDVSEQGQALLAVLFPHLAGLRVHRVED
Ga0335080_101518552	3300032828	Soil	VPPAGAATAPRLVWEVSELGASLLTALFPHLAGLRVHQVEDR
Ga0335080_104334943	3300032828	Soil	LPPQSVMPPAGPASSPARAIWDVSEQGQALLAVLFPHLAGLRVHRIEDVTDAVI
Ga0335080_117701812	3300032828	Soil	LPPQSVILPGEAPTSASRLVWGLSEQGESLLTALFPHLAGLRLHRVSDTVTRW
Ga0335081_111025771	3300032892	Soil	LPDQSVMLPAGPAGSAARVVWDVSGQGQALLAVLFPHLAGLRVHRVEDT
Ga0335073_103294851	3300033134	Soil	MPPAGPAISAARIVWDVGEQGQALLAVLFPHLAGLRVHRVEDGGDAVMIVASCRA
Ga0335077_101551822	3300033158	Soil	VPPPGAASVPRLVWDVSEQGEGLLTALFPHLAGLRVHRVEDR
Ga0318519_103129392	3300033290	Soil	MPPAGAATAPRLVWDVSEQGESLLTVLFPHLAGLRVHRVEDIGHAVVISASCRAGGACCPRCG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084684

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences