Metagenome / Metatranscriptome Family F084642

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084642
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	56 residues
Representative Sequence	SVEELADTDQAIEAAAVEGVEDAAAHPERPVHTHEEYGRPDDVPPRHRDDEAA
Number of Associated Samples	93
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.54 %
% of genes near scaffold ends (potentially truncated)	83.04 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.607 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.179 % of family members)
Environment Ontology (ENVO)	Unclassified (32.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.750 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.51% β-sheet: 0.00% Coil/Unstructured: 60.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00383	dCMP_cyt_deam_1	4.46
PF01642	MM_CoA_mutase	4.46
PF01161	PBP	3.57
PF00154	RecA	3.57
PF02894	GFO_IDH_MocA_C	1.79
PF00248	Aldo_ket_red	1.79
PF13414	TPR_11	1.79
PF04389	Peptidase_M28	1.79
PF12848	ABC_tran_Xtn	1.79
PF13432	TPR_16	1.79
PF01592	NifU_N	0.89
PF04253	TFR_dimer	0.89
PF06386	GvpL_GvpF	0.89
PF02075	RuvC	0.89
PF02518	HATPase_c	0.89
PF01012	ETF	0.89
PF07676	PD40	0.89
PF11345	DUF3147	0.89
PF13181	TPR_8	0.89
PF01261	AP_endonuc_2	0.89
PF01594	AI-2E_transport	0.89
PF06897	DUF1269	0.89
PF13189	Cytidylate_kin2	0.89
PF01842	ACT	0.89
PF09900	DUF2127	0.89
PF12307	DUF3631	0.89
PF00152	tRNA-synt_2	0.89
PF14907	NTP_transf_5	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	4.46
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	3.57
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	3.57
COG0673	Predicted dehydrogenase	General function prediction only [R]	1.79
COG0017	Aspartyl/asparaginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0173	Aspartyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.89
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	0.89
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG1190	Lysyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.89
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.89
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	0.89
COG2269	Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway)	Translation, ribosomal structure and biogenesis [J]	0.89
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.61 %
Unclassified	root	N/A	13.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.61 %
Unclassified	root	N/A	13.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.61 %
Unclassified	root	N/A	13.39 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.29 %
Unclassified	root	N/A	13.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.36 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.32 %
Unclassified	root	N/A	13.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	20.54 %
Unclassified	root	N/A	13.39 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	20.54 %
Unclassified	root	N/A	13.39 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Unclassified	root	N/A	13.39 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	8.93 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Unclassified	root	N/A	13.39 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4.46 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12601196	All Organisms → cellular organisms → Bacteria → Acidobacteria	808	Open in IMG/M
3300003308\|Ga0006777J48905_1002715	All Organisms → cellular organisms → Bacteria → Acidobacteria	900	Open in IMG/M
3300003321\|soilH1_10020033	All Organisms → cellular organisms → Bacteria → Acidobacteria	1949	Open in IMG/M
3300004157\|Ga0062590_100452084	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300005167\|Ga0066672_10348323	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	967	Open in IMG/M
3300005175\|Ga0066673_10415560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	787	Open in IMG/M
3300005180\|Ga0066685_10603912	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	755	Open in IMG/M
3300005181\|Ga0066678_10609483	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	726	Open in IMG/M
3300005184\|Ga0066671_10293740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300005328\|Ga0070676_11191400	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005332\|Ga0066388_100011950	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6901	Open in IMG/M
3300005332\|Ga0066388_100475619	All Organisms → cellular organisms → Bacteria → Acidobacteria	1888	Open in IMG/M
3300005339\|Ga0070660_101044288	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300005434\|Ga0070709_11301488	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	586	Open in IMG/M
3300005435\|Ga0070714_100474601	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300005437\|Ga0070710_10285810	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300005437\|Ga0070710_10712200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	709	Open in IMG/M
3300005439\|Ga0070711_100122415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1926	Open in IMG/M
3300005439\|Ga0070711_100571086	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300005439\|Ga0070711_101948628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300005554\|Ga0066661_10643074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	626	Open in IMG/M
3300005575\|Ga0066702_10107602	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1603	Open in IMG/M
3300005576\|Ga0066708_10964178	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	530	Open in IMG/M
3300005614\|Ga0068856_100297122	All Organisms → cellular organisms → Bacteria	1632	Open in IMG/M
3300006028\|Ga0070717_10149635	All Organisms → cellular organisms → Bacteria → Acidobacteria	2019	Open in IMG/M
3300006028\|Ga0070717_11405696	All Organisms → cellular organisms → Bacteria → Acidobacteria	634	Open in IMG/M
3300006028\|Ga0070717_11476981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300006046\|Ga0066652_101017000	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300006173\|Ga0070716_100279980	Not Available	1150	Open in IMG/M
3300006173\|Ga0070716_101248642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300006175\|Ga0070712_101245201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300006755\|Ga0079222_12365717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300009012\|Ga0066710_103427415	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300009012\|Ga0066710_103938325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300009029\|Ga0066793_10847306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300009089\|Ga0099828_10230983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1655	Open in IMG/M
3300009093\|Ga0105240_12094610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300009137\|Ga0066709_103884431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300009137\|Ga0066709_104479004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300009553\|Ga0105249_13419466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300009628\|Ga0116125_1082089	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300009792\|Ga0126374_10225820	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300010043\|Ga0126380_10596785	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300010046\|Ga0126384_10433308	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1118	Open in IMG/M
3300010333\|Ga0134080_10499317	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	578	Open in IMG/M
3300010366\|Ga0126379_10004374	All Organisms → cellular organisms → Bacteria → Proteobacteria	9308	Open in IMG/M
3300010366\|Ga0126379_13375005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300010396\|Ga0134126_12857451	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300010398\|Ga0126383_12261052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300011269\|Ga0137392_10055251	All Organisms → cellular organisms → Bacteria	3001	Open in IMG/M
3300011270\|Ga0137391_11268787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300011271\|Ga0137393_10088197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2509	Open in IMG/M
3300011271\|Ga0137393_11502372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300012189\|Ga0137388_10182638	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1881	Open in IMG/M
3300012207\|Ga0137381_11424543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300012211\|Ga0137377_10796341	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300012356\|Ga0137371_10284636	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300012356\|Ga0137371_11253055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300012357\|Ga0137384_10951446	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300012469\|Ga0150984_117502875	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300012918\|Ga0137396_10866710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300012924\|Ga0137413_11545721	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300012929\|Ga0137404_10153051	All Organisms → cellular organisms → Bacteria	1920	Open in IMG/M
3300014150\|Ga0134081_10381804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300014166\|Ga0134079_10479246	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	596	Open in IMG/M
3300014497\|Ga0182008_10086375	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300014497\|Ga0182008_10163545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1121	Open in IMG/M
3300014501\|Ga0182024_10113227	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3905	Open in IMG/M
3300014658\|Ga0181519_10325376	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	953	Open in IMG/M
3300014658\|Ga0181519_10417470	Not Available	828	Open in IMG/M
3300014969\|Ga0157376_12777465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300015357\|Ga0134072_10107919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	865	Open in IMG/M
3300015357\|Ga0134072_10445373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300015372\|Ga0132256_100168413	All Organisms → cellular organisms → Bacteria	2215	Open in IMG/M
3300017930\|Ga0187825_10115393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300017946\|Ga0187879_10257949	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300018026\|Ga0187857_10223899	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300018433\|Ga0066667_11869459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300018468\|Ga0066662_10563281	Not Available	1056	Open in IMG/M
3300019887\|Ga0193729_1056177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1587	Open in IMG/M
3300019888\|Ga0193751_1005825	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6877	Open in IMG/M
3300020021\|Ga0193726_1115471	Not Available	1202	Open in IMG/M
3300020069\|Ga0197907_10887886	Not Available	632	Open in IMG/M
3300020075\|Ga0206349_1033621	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300021384\|Ga0213876_10169359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1162	Open in IMG/M
3300022881\|Ga0224545_1000117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	15621	Open in IMG/M
3300023255\|Ga0224547_1043222	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300024049\|Ga0233359_1040362	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300025912\|Ga0207707_10793754	Not Available	789	Open in IMG/M
3300025914\|Ga0207671_11544427	Not Available	512	Open in IMG/M
3300025915\|Ga0207693_11434601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300025924\|Ga0207694_11649229	Not Available	540	Open in IMG/M
3300026221\|Ga0209848_1010153	Not Available	1879	Open in IMG/M
3300026305\|Ga0209688_1038868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300026318\|Ga0209471_1286739	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300026326\|Ga0209801_1241828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300026326\|Ga0209801_1249440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300027545\|Ga0209008_1124029	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300027862\|Ga0209701_10558098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300027867\|Ga0209167_10024901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2858	Open in IMG/M
3300027884\|Ga0209275_10219577	Not Available	1034	Open in IMG/M
3300027908\|Ga0209006_10291782	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300030855\|Ga0075374_11079854	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031122\|Ga0170822_13947598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	637	Open in IMG/M
3300032805\|Ga0335078_10709650	All Organisms → cellular organisms → Bacteria → Acidobacteria	1244	Open in IMG/M
3300032805\|Ga0335078_11407203	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	787	Open in IMG/M
3300034130\|Ga0370494_163992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.71%
Host-Associated	Host-Associated	14.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.36%
Plants	Host-Associated → Plants	14.29%
Aquatic	Environmental → Aquatic	5.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.61%
Freshwater	Environmental → Aquatic → Freshwater	5.36%
Peat	Environmental → Terrestrial → Peat	1.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.46%
Loam	Environmental → Terrestrial → Soil → Loam	18.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.25%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.79%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.79%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003308	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300024049	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-P30	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026221	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062 (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300034130	Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_126011963	3300000789	Soil	VEDSVEDLSDTDQALEAAAAEGIEDAADHPERPTHTHEEYGHPDDVPPRNRDDEAA*
Ga0006777J48905_10027151	3300003308	Avena Fatua Rhizosphere	VEELADTDQAFEAAIIEGAEDAGDHPERPVHTHEEYGRPDDVPPRRRDDEAA*
soilH1_100200331	3300003321	Sugarcane Root And Bulk Soil	AETGQDLEASVIEGVEDAADHPERPVHTHQEYARPDDLPPNRQREDSGEPEDEAA*
Ga0062590_1004520841	3300004157	Soil	SVEELAETDQAWEAAEVEGVEDAADHPERPVHTHLEYGRPDDLPPKRGSR*
Ga0066672_103483234	3300005167	Soil	LSTDEDSGNESVEELSEASQAIEAASVEGSEDAADHPERPVHTHNEYGRPDDLPPARISDRKKAS*
Ga0066673_104155602	3300005175	Soil	STMADASEESVEELADTDQALESAAVEGSEDAADHPERPTHTHTEYGRPDDLPPNKGSE*
Ga0066685_106039121	3300005180	Soil	VEELADTDQAFEAAAVEGSEDAADHPERPAHTHLEYGRPDDLPPERGSE*
Ga0066678_106094831	3300005181	Soil	EESVEELADTDQAFEAAAVEGSEDAADHPERPVHTHLEYGRPDDLPPERGSE*
Ga0066671_102937403	3300005184	Soil	MADASEESVEELADTDQALESAAVEGSEDAADHPERPTHTHTEYGRPDDLPPNKGSE*
Ga0070676_111914002	3300005328	Miscanthus Rhizosphere	LAETDQAWEAAEVEGVEDAADHPERPVHTHLEYGRPDDLPPKRGSR*
Ga0066388_1000119508	3300005332	Tropical Forest Soil	MNEESVEELAGIEQSLESAAVEGVRDASDHPERPVHTHNDDGRPGDVPPIGNRDEAA*
Ga0066388_1004756193	3300005332	Tropical Forest Soil	ESVEELADTDQSLESARVEGVEDANDHPERATHTHNEYGRPDDLPPARESRSS*
Ga0070660_1010442882	3300005339	Corn Rhizosphere	SVEELSDTDQAYEAAVVEGVEDAADHPERSVHTHLEYGRPDDQPPERGDDEEAA*
Ga0070709_113014882	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ADTDQAMEAAAIEGVEDAADHPERPVHTHIEYPNPEDIPPQRREEE*
Ga0070714_1004746011	3300005435	Agricultural Soil	EELSDADQAIEAAAVEGVEDAADHPERPTHTHEEYGNPEDVPPRRRDDAA*
Ga0070710_102858104	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VEELAEDDQAIEAATVEGVEDAADHPERPVHTHNEYGRPDDLPPARSSDRKKAS*
Ga0070710_107122003	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GQSGDPQRLSIVEDADNESVEELADDDQAIEASTVDGVEDAADHPERPTHTHNEYGRPDDLPPARSQDRKKAS*
Ga0070711_1001224155	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VEDADNESVEELADDDQAIEASTVDGVEDAADHPERPTHTHNEYGRPDDLPPARSQDRKKAS*
Ga0070711_1005710861	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VEELADTDQASEAAAVEGLEDAADHPERPTHTHEDYGRPEDVPTRNRNRDAA*
Ga0070711_1019486282	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VEDADSESVEQLAEDDQGIEAAAVEGVEDAADHPERPVHTHEEYGHPDDLPPARSRDRKKAS*
Ga0066661_106430743	3300005554	Soil	QSGDAQRLSTTQDMDNESVEELDNTDQALEAARVEGLEDAADHPERPVHTHIEYGRPDDLPPARSSDRKKAS*
Ga0066702_101076021	3300005575	Soil	LADTDQALESAAVEGSEDAADHPERPTHTHTEYGRPDDLPPNKGSE*
Ga0066708_109641781	3300005576	Soil	ADASEESVEELADTDQALESAAVEGSEDAADHPERPTHTHTEYGRPDDLPPNKGSE*
Ga0068856_1002971223	3300005614	Corn Rhizosphere	VEELADTDQALEAAAVDGSEDAADHPERPVHTHTEYGRLDDVPPQREPGEDAA*
Ga0070717_101496351	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TDQALEAAAVEGLEDAADHPERPAHTHDEYGRPEDVPRGNRNRNAA*
Ga0070717_114056962	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	NESVDELEETDQALEAATVEGIEDAANHPERPTHTHNEYGRPDDLPPARVSDRKKAS*
Ga0070717_114769811	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	NESVEELDNTDQALEAARVEGLEDAADHPERPVHTHVEYGRPDDLPPARFSDRKKAS*
Ga0066652_1010170001	3300006046	Soil	NESVEELSEASQAIEAARVEGSEDAADHPERPVHTHNEYGRPDDLPLARSSDRKKAS*
Ga0070716_1002799801	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	FGISERELADTDQAIEAAAVEGVEDAADHPERPTHTHEEYGRPDDLPPNRKRDDAA*
Ga0070716_1012486422	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GGFGISERELADTDQAIEAAAVEGVEDAADHPERPTHTHEEYGRPDDLPPNRKQEDAA*
Ga0070712_1012452012	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SFAAKGSLTRNTGGFGISERELADTDQAIEAAAVEGVEDAADHPERPTHTHEEYGRPDDLPPNRKRDDAA*
Ga0079222_101431231	3300006755	Agricultural Soil	ELSDADQAIEAAAVEGAEDAADHPERPTHTHEEYGNPEDVPPRRRDDAA*
Ga0079222_123657172	3300006755	Agricultural Soil	LSEIEDANDESVEELADTDQALEAARVEGLEDAADHPERPTHTHLEYGRPDDVPPNRR*
Ga0066710_1034274151	3300009012	Grasslands Soil	ELADADQALEAAAVEGIEDAADHPERSAHTHIEQPRAEDVPPKPGPD
Ga0066710_1039383251	3300009012	Grasslands Soil	DNESVEELEDTDQALEAARVEGAEDAADHPERPVHTHNDYGRPDDLPPARASDRKKAS
Ga0066793_108473061	3300009029	Prmafrost Soil	ALSSEEDANNESVEELADTDQALEAAAVEGVEDAADHPERPVHTHEEYGRPDDVPPKRNRDAA*
Ga0099828_102309833	3300009089	Vadose Zone Soil	EELAATDQAFEAEAVAGVEDAADHPERPAHTHDEYGRPDDIPPKDGLE*
Ga0105240_120946101	3300009093	Corn Rhizosphere	RLSIVEDADNESVEELADEDQAIEASRVDGIEDAADHPERPTHTHNEYGHPDDLPPARSQDRKKAS*
Ga0066709_1038844311	3300009137	Grasslands Soil	RLSTTEDMDNESVEELDNTDQALEAARVEGLEDAADHPERPVHTHIEYGRPDDLPPARSSDRKKAS*
Ga0066709_1044790042	3300009137	Grasslands Soil	QRLSAREDADNESVEELSEASQAIEAARVEGSEDAADHPERPVHTHNEYGRPDDLPPARSSDRKKAS*
Ga0105249_134194661	3300009553	Switchgrass Rhizosphere	QLSPDAEASEESVEELADTDQALEAAAVDGSEDAADHPERPVHTHTEYGRPNDVPPQREPGEDAA*
Ga0116125_10820892	3300009628	Peatland	EEATEESVEELAASGQALEASAVEGLEDAADHPERPVQTHEDYGRPNDALPTNE*
Ga0126374_102258202	3300009792	Tropical Forest Soil	MNEESVEELAGTEQSLESAAVEGVKDASAHPERPVHTHNDDGRPGDVPPIGNRDEAA*
Ga0126380_105967852	3300010043	Tropical Forest Soil	MNEESVEELAGTEQSLESAAVEGVKDASAHPERPVHTHNDDGRPGDVPAIRNRDEAA*
Ga0126384_104333082	3300010046	Tropical Forest Soil	LTETSQAIQAARVEGVEDAADHPERLAHTHNGYGHADDVPPAPEKKKAS*
Ga0134080_104993173	3300010333	Grasslands Soil	LSEAAQDIEAARVEGSEDAADHPERPVYTHNEYGRPDDLPPARISDRKKAS*
Ga0126379_100043749	3300010366	Tropical Forest Soil	EDSAENLSDTDQADEAAAVEGLEDATDHPERPTHTHAEYGRPDDVPSRRRDHETACD*
Ga0126379_133750052	3300010366	Tropical Forest Soil	DNESTDELADTDQALEAGRVEGVEDAAEHPERPVHTHNEYGRPDDLPPESLRS*
Ga0134126_128574512	3300010396	Terrestrial Soil	VEDASNESVEELAEEDQAFEASIVDGVEDAAAHPERPVHTHTEYGRPDDLPPARSEDRKKAS*
Ga0126383_122610522	3300010398	Tropical Forest Soil	MNEESVEELAGTEQSLESAAVEGVKDASAHPERPVHTHNDDGRPGDVPPIRNRDEAA*
Ga0137392_100552511	3300011269	Vadose Zone Soil	NQSWESAAVEGSEDAGDHPARPAHTHEEYGRPDDAPPKAARQS*
Ga0137391_103511801	3300011270	Vadose Zone Soil	TDQATEAAAVEGVEDAANHPERPAHTHLEYPRPDDVLPNRGEG*
Ga0137391_112687871	3300011270	Vadose Zone Soil	TNQSWESAAVEGSKDAADHPERPAHTREEYGRPDDAPPKAARQS*
Ga0137393_100881975	3300011271	Vadose Zone Soil	LAEIEDASEESIEELNDTDQALEAAALDGLEDAASHPERPTHTHLEYGRPDDYPPRRRDDEE*
Ga0137393_115023722	3300011271	Vadose Zone Soil	DTNQSWESAAVEGSEDAADHPERPAHTHEEYGRPDDVPPKTARQS*
Ga0137388_101826381	3300012189	Vadose Zone Soil	GLSPVPEAGTESVEELAATDQAFEAEAVAGVEDAADHPERPAHTHDEYGRPDDIPPKDGLE*
Ga0137399_108550683	3300012203	Vadose Zone Soil	ADTDQALEAASVDGVEDAANHPERPAHTHQEYGRPDDLPPARSADRKKAS*
Ga0137381_114245431	3300012207	Vadose Zone Soil	SDESVEELADSDQALEAASVEGVEDAADHPERPTHTHDEYGHPDDVLPRKGNEAA*
Ga0137377_107963411	3300012211	Vadose Zone Soil	ADGESVEELADTGQPYEAEAVGGVEDAADHPERPVHSHGYQGRQDILPKRRSD*
Ga0137371_102846361	3300012356	Vadose Zone Soil	ELEDTDQALEAARVEGAEDAADHPERPVYTHNDYGRPDDLPPARVSDRKKAS*
Ga0137371_112530551	3300012356	Vadose Zone Soil	GQSGGMQRLSTDEDSGNESVDELSEASQGIEAARVEGSEDAADHPERPVHTHNEYGRPDDLPPARISDRKKAS*
Ga0137384_109514461	3300012357	Vadose Zone Soil	VEELADADQALEAAAVEGIEDAADHPERSVHTHIEHPRPEDVPPKRGPD*
Ga0150984_1175028751	3300012469	Avena Fatua Rhizosphere	ELDNTDQALEAARVEGLEDAADHPERPVHTHVEYGRPDDLPPARSSDRKKAS*
Ga0137396_108667102	3300012918	Vadose Zone Soil	DANEESVEELADTDQPFESAAVEGVEDAADHPERPTHTHEEYGRPEDVPPRRKSA*
Ga0137413_115457212	3300012924	Vadose Zone Soil	GLSHIAEANEESVEELADTDQAFESAAVEGIEDAADHPERPAHTHEEYGRPDDVPPKAA*
Ga0137404_101530511	3300012929	Vadose Zone Soil	VQRLSASEDADNESVEELSEASQAIEAARVEGSEDAADHPERPVHTHNEYGRPDDLPPARSSDRKKAS*
Ga0134081_103818042	3300014150	Grasslands Soil	VEELADTDQALESAAVEGSEDAADHPERPTHTHTEYGRADDLPPNKGSE*
Ga0134079_104792461	3300014166	Grasslands Soil	DANEESVAELADTDQAFEAAAVEGVEDAADHPERPVHTHQEYGRPDDLPPARSHDRKKAS
Ga0182008_100863751	3300014497	Rhizosphere	ADTDQALEAAAVDGSEDAADHPERPVHTHTEYGRPDDVPPQREPGEDAA*
Ga0182008_101635453	3300014497	Rhizosphere	DSNEESVEELSDADQALEAASVEGVEDAADHPERPTHTHQEYGNPEDVPPRKHDDAA*
Ga0182024_101132273	3300014501	Permafrost	VEDASDESVEELAGSEQALEAAAVDGVEDAADHPERPVPTHEEYGRPDDVPPRRRKRDAA
Ga0181519_103253761	3300014658	Bog	ADTDQAFESAAVEGVEDAADHPERPTHTHEEYGRPEDLPPKRRTA*
Ga0181519_104174702	3300014658	Bog	LANEDQAVEAAAIEGVEDAADHPERPVHTHVEYGVLEDAPPAKNDDEEAA*
Ga0157376_127774651	3300014969	Miscanthus Rhizosphere	SIEDASVESVEELANTAQALEAASVEGLEDAADHPERPAHTHDEYGRPEDVPPRTRNRNAA*
Ga0134072_101079191	3300015357	Grasslands Soil	EELVETDQALEAARVEGLEDAADHPERPAHTHEEYGRPDDLPPARFSDRKKAS*
Ga0134072_104453733	3300015357	Grasslands Soil	VEELSEASQAIEAATVEGSEDAADHPERPVHTHNEYGRPDDLPPARSSDRKKAS*
Ga0132256_1001684131	3300015372	Arabidopsis Rhizosphere	ADATEDSVENLADTDQAVEAAAVEGVEDAADHPERPTHTHEEYGRPDDAPPRKREDEAA*
Ga0187825_101153931	3300017930	Freshwater Sediment	SVEELADADQAIEAAAVEGVEDAADHPERPTHTHEEYGNPEDVPPRKRDDAA
Ga0187879_102579491	3300017946	Peatland	QVSDVEEATDQSVEELAETDQALEAAAVDGVEDAADHSERPVHTHDRYGRPDDLPPTTRDEAA
Ga0187857_102238991	3300018026	Peatland	SVEELADTDQAFESAAVEGIGDTADHPERPTHIHEQSWRPDDVPPRKTA
Ga0066667_118694591	3300018433	Grasslands Soil	EESVEELSDADQAIEAATVEGVEDAADHPERPTHTHEEYGNPEDLPPRRRDDAA
Ga0066662_105632811	3300018468	Grasslands Soil	EELADTDQAFEAAAVLGAEEAADHPERPVHTQQEYPSRADDIPPQRGPEDVDDAA
Ga0193729_10561772	3300019887	Soil	ANDESVEELADTDQAFEAAAVEGVEDAADHPERPVHTHLEYGRPDDLPPETGSE
Ga0193751_10058255	3300019888	Soil	VADQALEAGIVDGVEDSADHPERPVHTHLEYGRPDDLPPIDGSDELEGRVSFP
Ga0193726_11154711	3300020021	Soil	QQLSRFEDAASESVEELAENDQSLEAMAVEGVEDAADHPERPVHAHTDYGRPDDLDTDRS
Ga0197907_108878861	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	IAEANEESVEELADTDQAIEAASVEGVEDAAAHPERPVHTHEEYGRPDDVPPRRRDDEAA
Ga0206349_10336213	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	EELSDTDQAYEAAVVEGVEDAADHPERSVHTHLEYGRPDDQPPERGDDEEAA
Ga0213876_101693591	3300021384	Plant Roots	ALAEDNQDYEAAVVEGVEDAADHPERPVHTHLEYGRPDDVPPQRREDDEAA
Ga0224545_100011714	3300022881	Soil	MRASEELADTDQAFESAAVEGIEDTADHPERPAHMHEEYWRPHDVPPRKTAERTAHGR
Ga0224547_10432222	3300023255	Soil	AEAQDESVEELSDTDQAYESAVAEGVEDAANHPERPVHTHEKYGRPEDVPPMKRSA
Ga0233359_10403622	3300024049	Soil	ANEESVEELADTDQAFESAAVEGVEDAADHPERPTHTHEEYGRPDDVPATRKIA
Ga0207680_106385582	3300025903	Switchgrass Rhizosphere	DQALEAAAVDGSEDAADHPERPVHTHTEYGRPDDVPPQREPGEDAA
Ga0207707_107937541	3300025912	Corn Rhizosphere	EANEESVEELADTDQAIEAASVEGVEDAAAHPERPVHTHEEYGRPDDVPPRRRDDEAA
Ga0207671_115444272	3300025914	Corn Rhizosphere	SVEELADTDQAIEAAAVEGVEDAAAHPERPVHTHEEYGRPDDVPPRHRDDEAA
Ga0207693_114346011	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SNIPDATEDSVEDLADTNQALEAASVEGAEDAADHPERPTHTHEEYGRPDDVPPRKRGSDAA
Ga0207694_116492291	3300025924	Corn Rhizosphere	EESVEELADTDQAIEAASVEGVEDAAAHPERPVHTHEEYGRPDDVPPRRRDDEAA
Ga0207674_112664402	3300026116	Corn Rhizosphere	LSDADQAIEAAAVEGVEDAADHPERPTHTHEEYGNPEDVPPRKRENAA
Ga0209848_10101534	3300026221	Permafrost Soil	LADTDQAYEAAVVEGVEDAADHPERPVHTHLEYGRPDDLPPAPETDDEEAA
Ga0209688_10388682	3300026305	Soil	LTETDQALEAARVEGLEDAADHPERPVHTHEEYGRPDDLPPARFSDRKKAS
Ga0209471_12867393	3300026318	Soil	EELADTDQAFESAALEGIEDATDHPERPAHTHEEYGRPDDVPPKAA
Ga0209801_12418281	3300026326	Soil	SEESVEELADADQALEAAAVEGIEDAADHPERSVHTHIEHPRPEDVPPKRGPD
Ga0209801_12494401	3300026326	Soil	LADTDQAFEAAAVEGSEDAADHPERPVHTHLEYGRPDDLPPERGSE
Ga0209008_11240292	3300027545	Forest Soil	ESVAELAESEQALEAAAVDGVEHAADSPERPVPTHEEYGRPDEVLPPRRRKRDAA
Ga0209701_105580981	3300027862	Vadose Zone Soil	ELSDTDQAFEAAAVEGVEDAADHPERPVHTHLDYGRPDDLPPEREAGDEDEEAA
Ga0209167_100249014	3300027867	Surface Soil	GLSDVAEAGDESVEELAESEQALEAAAIDGVEDAGDHPERPSHTHEEYGHPEDLPSRTKRNDAA
Ga0209275_102195772	3300027884	Soil	VEELADTDQAFESAAVEGVEDAADHPERPTHTHNEYGHPDNMPPQKRIA
Ga0209006_102917822	3300027908	Forest Soil	LSEVADANDESVEELADTDQAFESAAVEGIEDAADHPERPTHTHEEYGRPDDVPPGRKIA
Ga0075374_110798542	3300030855	Soil	AEDSVEDLSDTDQAVEAAAVEGVEHAADHPERPTHTHEEYGHPDDVPPRNRDDEAA
Ga0170822_139475982	3300031122	Forest Soil	SGDAQRLSITADANEESVEELAETDQAFEAAAVEGIEDAADHPERPVHTHQEYGRPDDLPPARISDRKKAS
Ga0335078_107096501	3300032805	Soil	SGGLQRLSSIEDAADESVEELADEAQALEAAAVEGSEDAADHPERPTHTHVEYRRPDDLPPERGSE
Ga0335078_114072031	3300032805	Soil	EDIDNESVEELADSDQALEAARVDGLEDAADHPERPVHTHNEYGRPDDLPPARSSDRRKA
Ga0370494_163992_408_572	3300034130	Untreated Peat Soil	DESVEELAAEEQSLEAARLEGIDDAADHPERPVHTHDEYGRSDDLPSTTRDDAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084642

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences