Metagenome / Metatranscriptome Family F084631

Basic Information
Family ID	F084631
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	86 residues
Representative Sequence	PPQIAPQLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Number of Associated Samples	99
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.17 %
% of genes near scaffold ends (potentially truncated)	59.82 %
% of genes from short scaffolds (< 2000 bps)	58.04 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Most Common Taxonomy
Group	Bacteria (55.357 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.429 % of family members)
Environment Ontology (ENVO)	Unclassified (30.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.821 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.13% β-sheet: 0.00% Coil/Unstructured: 40.87%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
a.138.1.3: Di-heme elbow motif	d3bnja_	3bnj	0.78398
a.8.11.1: AF1782-like	d2pmra1	2pmr	0.7742
a.29.3.0: automated matches	d5af7a2	5af7	0.75729
a.29.3.1: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain	d1r2ja1	1r2j	0.74281
a.8.11.1: AF1782-like	d2oo2a1	2oo2	0.74264

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01266	DAO	73.21
PF09587	PGA_cap	3.57
PF00254	FKBP_C	2.68
PF01346	FKBP_N	1.79
PF02687	FtsX	0.89
PF00873	ACR_tran	0.89
PF02954	HTH_8	0.89
PF02321	OEP	0.89
PF02867	Ribonuc_red_lgC	0.89
PF00005	ABC_tran	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0545	FKBP-type peptidyl-prolyl cis-trans isomerase	Posttranslational modification, protein turnover, chaperones [O]	1.79
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.79
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.68 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.79 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.68 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.79 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.68 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.89 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.68 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.89 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.68 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.89 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004091\|Ga0062387_100972500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	648	Open in IMG/M
3300004092\|Ga0062389_100078314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2812	Open in IMG/M
3300004092\|Ga0062389_101007390	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005293\|Ga0065715_10845173	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005332\|Ga0066388_102468518	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300005343\|Ga0070687_100614620	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300005434\|Ga0070709_11535374	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005563\|Ga0068855_100531604	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300005610\|Ga0070763_10962347	Not Available	510	Open in IMG/M
3300005764\|Ga0066903_104923228	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005921\|Ga0070766_10052230	All Organisms → cellular organisms → Bacteria	2301	Open in IMG/M
3300005944\|Ga0066788_10202538	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300006028\|Ga0070717_11475514	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006050\|Ga0075028_100056595	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300006174\|Ga0075014_100910489	Not Available	527	Open in IMG/M
3300006176\|Ga0070765_100192572	All Organisms → cellular organisms → Bacteria	1847	Open in IMG/M
3300006797\|Ga0066659_11479991	Not Available	568	Open in IMG/M
3300006854\|Ga0075425_102299160	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300006871\|Ga0075434_100919759	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300009098\|Ga0105245_11481834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300010046\|Ga0126384_11755194	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300010343\|Ga0074044_11074148	Not Available	527	Open in IMG/M
3300012189\|Ga0137388_10233294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1670	Open in IMG/M
3300012202\|Ga0137363_10682706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	869	Open in IMG/M
3300012925\|Ga0137419_10186170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1527	Open in IMG/M
3300012930\|Ga0137407_10080161	All Organisms → cellular organisms → Bacteria	2748	Open in IMG/M
3300013296\|Ga0157374_10977284	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	865	Open in IMG/M
3300013307\|Ga0157372_10658874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1219	Open in IMG/M
3300018060\|Ga0187765_10868933	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300018431\|Ga0066655_11204223	Not Available	537	Open in IMG/M
3300020579\|Ga0210407_10134054	All Organisms → cellular organisms → Bacteria → Acidobacteria	1901	Open in IMG/M
3300020579\|Ga0210407_10182622	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300020580\|Ga0210403_10000199	All Organisms → cellular organisms → Bacteria	67183	Open in IMG/M
3300020581\|Ga0210399_10659334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300020583\|Ga0210401_11531428	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300021170\|Ga0210400_10021873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4989	Open in IMG/M
3300021171\|Ga0210405_10123608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2043	Open in IMG/M
3300021178\|Ga0210408_11478668	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300021403\|Ga0210397_10521862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300021404\|Ga0210389_10337810	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300021406\|Ga0210386_11068324	Not Available	686	Open in IMG/M
3300021433\|Ga0210391_10214684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1512	Open in IMG/M
3300021474\|Ga0210390_11350554	Not Available	569	Open in IMG/M
3300021477\|Ga0210398_10915315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300021478\|Ga0210402_11014021	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300021478\|Ga0210402_11539654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300021559\|Ga0210409_11327049	Not Available	595	Open in IMG/M
3300025927\|Ga0207687_10415937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1108	Open in IMG/M
3300025939\|Ga0207665_10877537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300026215\|Ga0209849_1096819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300027070\|Ga0208365_1030828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300027297\|Ga0208241_1068000	Not Available	570	Open in IMG/M
3300027652\|Ga0209007_1151417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300027678\|Ga0209011_1219775	Not Available	511	Open in IMG/M
3300027745\|Ga0209908_10198836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300027846\|Ga0209180_10069059	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300027884\|Ga0209275_10380145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300027889\|Ga0209380_10042043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2590	Open in IMG/M
3300027908\|Ga0209006_10279162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1431	Open in IMG/M
3300028789\|Ga0302232_10539592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300028808\|Ga0302228_10085051	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300028906\|Ga0308309_10251350	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300031708\|Ga0310686_100606963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300031708\|Ga0310686_112710806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300031716\|Ga0310813_11318210	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031720\|Ga0307469_10735283	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300031754\|Ga0307475_10732998	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	787	Open in IMG/M
3300031754\|Ga0307475_11161503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300031879\|Ga0306919_11535779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300032180\|Ga0307471_103681198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300032205\|Ga0307472_100701001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	910	Open in IMG/M
3300032828\|Ga0335080_11146684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.86%
Host-Associated	Host-Associated	7.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.50%
Plants	Host-Associated → Plants	7.14%
Aquatic	Environmental → Aquatic	5.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.36%
Freshwater	Environmental → Aquatic → Freshwater	3.57%
Peat	Environmental → Terrestrial → Peat	2.68%
Sediment	Environmental → Aquatic → Sediment	1.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.93%
Loam	Environmental → Terrestrial → Soil → Loam	20.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.25%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.68%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.68%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1016441582	3300002245	Forest Soil	PAGNSSQTDTPNKPXVPQIAPQLTPXETSAAQQQTSQSLSVAERNIGSAGGKTLNATQQDLASKVRSFMVEAREAANSGDWTRARNAAKKAEVLSQELASSL*
JGI25617J43924_100694872	3300002914	Grasslands Soil	QQQTGQSLSIAERNIASADGKSLNATQQDLASKVRSFMAEARDAAHNGDWTRARNAAKKAEVLSQELASSL*
JGI25617J43924_101300082	3300002914	Grasslands Soil	QRQTSQSLSVAERNIGAADGKALNAMQQDLASKVRSFMAEAREAANNGDWTRAKNAAKKAEVLSQELASSL*
JGI25617J43924_101728821	3300002914	Grasslands Soil	QQQTGQSLSIAERNIASADGKSLNATQQDLASKVRSFMAEARDAAHNGDWTRARNAAKKAEVLSQELAGSL*
Ga0062387_1009725001	3300004091	Bog Forest Soil	SGPNNAVKFEPPQLVPQLTPQETEAAQQQTNLSLSIAERNLGATRGKALNAMQLDLASKVRSFVTEAREAAHVGDWTRASNAAKKAQVLSEELARSL*
Ga0062389_1000783143	3300004092	Bog Forest Soil	PQRPRVPAAPSGPNNAVKFEPPQLVPQLTPQETEAAQQQTNLSLSIAERNLGATRGKALNAMQLDLASKVRSFVTEAREAAHVGDWTRASNAAKKAQVLSEELARSL*
Ga0062389_1010073902	3300004092	Bog Forest Soil	QSMPQRPRVAAAPPGPSNPARPEAPQITPQLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL*
Ga0065715_108451731	3300005293	Miscanthus Rhizosphere	AEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0066388_1024685181	3300005332	Tropical Forest Soil	PRVPVIPAGGSSGTKFEPPTIVPQLTAQEAEAAQQQTNVSLSIAERNVGAAQGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSM*
Ga0070687_1006146201	3300005343	Switchgrass Rhizosphere	QEAEAAEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0070709_115353741	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	PARPRVPVSSSAVGSSVKFEPPTIVPQLTAQETEAAQQQTNLSLSIAERNVGFTRGRTLNAAQSDLVSKVRSFVTEAREAAHNGDWTRASNAAKKAQVLSEELARSL*
Ga0070708_1004242901	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	PLLTAGEASAAQQQTSQSLSVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKIGDWTRARAAAKKAEVLSQELASSL*
Ga0070730_100241068	3300005537	Surface Soil	DVPQLAPQLGAAETTAAQQQTSQSLDIAQRNIGASEGKTLNAAQQDLASKVRSFIAEAREAVRTGDWIRARNAAKKAEVLSQELASSL*
Ga0068855_1005316042	3300005563	Corn Rhizosphere	LSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0070763_109623471	3300005610	Soil	QQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL*
Ga0066903_1049232281	3300005764	Tropical Forest Soil	PQLTPQESEAAQQQTNLSLSIAERNVSYTRGRTLNAVQSDLVSKVRSFVSEAREAAHSGDWTRASNAAKKAQVLSEELARSL*
Ga0070766_100522304	3300005921	Soil	PPQIAPQLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL*
Ga0066788_102025381	3300005944	Soil	TAAAQQQTNLSLSIAERNIAASRGRTLNATQSDLASKVRSFVAEARDAAHVGDWTRASNAAKKAQVLSEELARSL*
Ga0070717_114755141	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TAEETAAAQQRTTESVNVAERNIAASQGRSLNATQSDLASKVRSFLTEAREAAHVGDWTRASNAAKKAQVLSEELAGSL*
Ga0075028_1000565951	3300006050	Watersheds	NNNTAKFEPPSIVPQLTPEESQAAQQQTNSSLSIAERNVTAARGRSLNAAQSDLVSKVRSFVSEAREAAHNGDWTRASTAAKKAQVLSEELARSL*
Ga0070716_1005474701	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SQSLGVAERNIGSAEGKPLNATQQDLASKVRSFMAEARDAANNGDWTRARAAAKKAEVLSQELASSL*
Ga0070716_1008013972	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	TAGEASAAQQQTSQSLSVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKLGDWTRARAAAKKAEVLSQELASSL*
Ga0075014_1009104891	3300006174	Watersheds	IQSVPQRPRVAVVAPGPSNPSRPEAPQIAPQLTAQEAAAAEQQTNLSLSIAERNIAASRGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL*
Ga0070765_1001925721	3300006176	Soil	EETAAAQQQTNLSLSIAERNLAAARGRMLNAAQSDLASKVRNFVNEARDAAHVGDWTRASSAAKKAQVLSEELAASL*
Ga0066659_114799911	3300006797	Soil	PLVAGNAAPARPRVPVVPAGGSSAAKFEPPTIVPQLTAQEAEAAQQQTNTSLSIAERNVGATRGRALNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0075425_1022991601	3300006854	Populus Rhizosphere	RLPVVPAGGSAAAKFEPPTIVPQLTAQEAEAAEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0075434_1009197592	3300006871	Populus Rhizosphere	TNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0099829_111566341	3300009038	Vadose Zone Soil	AAQQQTSQSLSVAERNIGAAGGKTLNAMQQDLASKVRSFMAEAREAANSGDWTRAKNAAKKAEVLSQELASSL*
Ga0105245_114818341	3300009098	Miscanthus Rhizosphere	PTIVPQLTTQEAEAAEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0126384_117551942	3300010046	Tropical Forest Soil	GNNAAKFEPPTIVPQLTPQETEAAQQQTSASLSIADRNVALTRGRTLNAQQSDLVSKIRSFVSESREAAHNGDWTRASNAAKKAQVLSEELARSL*
Ga0074044_110741481	3300010343	Bog Forest Soil	AQQQTNLSLSIAERNIVAAQGKKLNAMQLDLASKVRSFVTEAREAAHVGDWTRASNAAKKAQVLSEELARSL*
Ga0126370_118928161	3300010358	Tropical Forest Soil	VSNPAASSEGSNRPEVPQIAQQLTPAEANAAQQQTNQSVSAAKRNLGSTEGKTLNATQQDLASKVRSFLAEARDAAQTGDWTRARNAAKKAEVLSQELARSL*
Ga0126377_132908881	3300010362	Tropical Forest Soil	VGATRGRTLSPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0137391_102432241	3300011270	Vadose Zone Soil	KPDVPQIAPLLSAGEATAAQQQTSQSLGVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKLGDWTRARAAAKKAEVLSQELASSL*
Ga0137388_102332942	3300012189	Vadose Zone Soil	MPQLTAEETTAAQQQTNVSLSIAERNIAVTQGKTLNPTQLDLASKVRSFVMEARESAHVGDWNRARSAAKKAQVLSEELVSSL*
Ga0137363_106827061	3300012202	Vadose Zone Soil	MPLRPRVPSVASGPSAASRPEPPQIAPQLTAQETAAAQQQTNLSLSIAERNIAASQGRTLNPTQSDLASKVRSFVTEARDAAHVGDWTRASSAAKKAQVLSEELAASL*
Ga0137362_105069831	3300012205	Vadose Zone Soil	SDAANKPDVPQIAPQLTAAETSAAQRQTRQSLSVAQRNIGVAEGKTLNATQQDLASKVRSFMAEAREAANSGDWTRARNAAKKAEVLSQELASSL*
Ga0137360_113037191	3300012361	Vadose Zone Soil	APQLTAAEANAAQQQTSQSLSVAERNIGAAGGKTLNAMQQDLASKVRSFMAEAREAANSGDWTRAKNAAKKAEVLSQELASSL*
Ga0137397_110265121	3300012685	Vadose Zone Soil	SAGEAVAAQQQTSQSLSVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKIGDWTRARAAAKKAEVLSQELVSSP*
Ga0137419_101861701	3300012925	Vadose Zone Soil	QIAPQLTAQETAAAQQQTNLSLSIAERNIAASQGRTLNPTQSDLASKVRSFVTEARDAAHVGDWTRASSAAKKAQVLSEELAASL*
Ga0137407_100801612	3300012930	Vadose Zone Soil	LTAQETAAAQQQTNLSLSIAERNIAASQGRTLNPTQSDLASKVRSFVTEARDAAHVGDWTRASSAAKKAQVLSEELAASL*
Ga0157374_109772841	3300013296	Miscanthus Rhizosphere	AEAAEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0157372_106588742	3300013307	Corn Rhizosphere	AANAAPARPRVPVVPAGGSAAAKFEPPTIVPQLTTQEAEAAEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL*
Ga0137412_101925061	3300015242	Vadose Zone Soil	VPQIAPLLSAGEATAAQQQTSQSLGVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKTGDWTRARAAAKKAEVLSQELASSL*
Ga0137403_106886561	3300015264	Vadose Zone Soil	QSLSVAERNVGSAGEKTLSPTQQDLAWKGRRFMAEAREAANSGDWTRARNAAKKAEVLSQELASSL*
Ga0187804_101579961	3300018006	Freshwater Sediment	SLSIAERNIGATRGKTLNAMQLDLASKVRSFVTEAREAAHIGDWTRASNAAKKAEVLSEELARSL
Ga0187765_108689331	3300018060	Tropical Peatland	PRVIAPPSVGGPPAKFEPPTVAPQLTAQEAEAAQQQTNLSLSIAERNVGYTRGRTLNATQSDLVSKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0066655_112042232	3300018431	Grasslands Soil	PRVPVAPSGGNSTAKFEPPTIVPQLTAEEAAAAQQQTNSSLSVAERNVGAARGRTLNPQQSDLVSKVRSFVSEAREAARNGDWMRASNAAKKAQVLSEELARSM
Ga0210407_101340543	3300020579	Soil	PPQIMPQLTAEETTEAQQQTNVSLSIAERNIAVTQGKSLNPAQLDLASKVRSFVTEARESAHVGDWTRARSAAKKAQVLSEELVSSL
Ga0210407_101826221	3300020579	Soil	PQIAPQLTAAETRTAQQQISQSLSVAERNIGAADGKALNAMQQDLASKVRSFMAEAHEAASSGDWTRAKNAAKKAEVLSQELASSL
Ga0210407_101948102	3300020579	Soil	NRPGVPQIAPQLTPAETSTAQQQISQSLSVAERNIGAAGGKTLNAMQQDLASKVRSFMAEAREAASSGDWTRAKNAAKKAEVLSQELASSL
Ga0210403_1000019942	3300020580	Soil	MLTAASEQTDEAPELQLDIPSSPSPLAIVQSAPQRPRVPAAPAQNAAARPEPPQIMPQLTAEETTEAQQQTNVSLSIAERNIAVTQGKSLNPAQLDLASKVRSFVTEARESAHVGDWTRARSAAKKAQVLSEELVSSL
Ga0210399_106593341	3300020581	Soil	LQLDIPSSPSPLAIVQSAPQRPRVPAAPAQNAAARPEPPQIMPQLTAEETTEAQQQTNVSLSIAERNIAVTQGKSLNPAQLDLASKVRSFVTEARESAHVGDWTRARSAAKKAQVLSEELVSSL
Ga0210401_115314281	3300020583	Soil	SVPPRPRVQAAPSQNVAARPEPPQIMPQLTAEETTEAQQQTNVSLSIAERNIAVTQGKTLNPAQLDLASKVRSFVTEARESAHVGDWTRARSAAKKAQVLSEELVSSL
Ga0179596_107224451	3300021086	Vadose Zone Soil	PQIAPQLTPAEATAAQQQTSQSLSIAERNIGSAEGKSLNAKQQDLASKVRSFMAEAHDAANTGDWTRARAASKKAEVLSQELASSL
Ga0210404_101084621	3300021088	Soil	TASETSAAQQQTSQSLSVAERNINSAGGRTLNATQQDLASKVRSFMAEARDAANIGDWTRARNAAKKAEVLSQELASSL
Ga0210406_1000077030	3300021168	Soil	VPQIAPQLTAAETRTAQQQISQSLSVAERNIGAADGKALNAMQQDLASKVRSFMAEAHEAASSGDWTRAKNAAKKAEVLSQELASSL
Ga0210400_100218739	3300021170	Soil	PDVPQIAPQLTAAETSAAQQQTSQSLSVAERNINSAGGRTLNATQQDLASKVRSFMAEARDAANIGDWTRARNAAKKAEVLSQELASSL
Ga0210400_104787162	3300021170	Soil	QNDAASKPEVPQIAPQLTAAETSAAQQQTGQSLSVAERNIASADGKTLNAMQQDLASKVRSFMLEARDAAKIGDWTRARNAAKKAEVLSQELASSL
Ga0210400_116775751	3300021170	Soil	APLLTAGEASAAQQQTSQSLSVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKLGDWTRARAAAKKAEVLSQELASSL
Ga0210405_101236082	3300021171	Soil	RVAAAPPGPSNTARPEPPQIAPQLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0210408_111520742	3300021178	Soil	AEASAAQQQTSQSLGVAERNIGSAEGKSLNATQQDLKSKVRSFMAEARDAANSGDWTRARAAAKKAEVLSQELASSL
Ga0210408_114786682	3300021178	Soil	PRPRVQAAPAQNAAARPEPPQIMPQLTAEETTEAQQQTNVSLSIAERNIAVTSGKTLNPTQLDLASKVRSFVTEARESAHVGDWNRARSAAKKAQVLSEELVSSL
Ga0210397_105218621	3300021403	Soil	AQNAAARPEPPQIMPQLTAEETTEAQQQTNVSLSIAERNIAVTQGKSLNPAQLDLASKVRSFVTEARESAHVGDWTRARSAAKKAQVLSEELVSSL
Ga0210389_103378102	3300021404	Soil	ISVAEKNIAASKGRSLNAMQSDLASKVRSFLAEAHEAAHVGDWTRASNAAKKAEVLSGELASSL
Ga0210386_110683242	3300021406	Soil	NNARPEAPQIAPQLTAQEAAAAQQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0210391_102146842	3300021433	Soil	NVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0210390_113505541	3300021474	Soil	PSNTARPEPPQIAPQLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0210398_109153152	3300021477	Soil	NPARPEAPQIAPPLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0210402_110140211	3300021478	Soil	PPQIMPQLTAEETPEAQQQTNVSLSIAERNIAVTQGKTLNPAQLDLASKVRSFVTEARESAHVGDWTRARSAAKKAQVLSEELVSSL
Ga0210402_115396542	3300021478	Soil	QLTAQEAEAAQQQTNVSLSIAERNVGAAQGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSM
Ga0210409_113270492	3300021559	Soil	AEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0242660_12493621	3300022531	Soil	SAAQRQTSQSLNVAERNIGAADGKTLNAMHQDLASKVRSFMAEAREAANSGDWTRAKNAAKKAEVLSHELASSL
Ga0137417_14583751	3300024330	Vadose Zone Soil	KQTSQSLGVAERNIALRRKGAERTQQDLASKVRSSWLKHGDAANSGDWTRARAAAKKAEVLSQELASSL
Ga0207687_104159371	3300025927	Miscanthus Rhizosphere	IVPQLTTQEAEAAEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL
Ga0207665_108775371	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VPVIPSGGGSGTKFEPPTIVPQLTAQEAEAAQQQTNVSLSIAERNVGAAQGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSM
Ga0209849_10968191	3300026215	Soil	EETAAAQQQTNLSLSIAERNIAASRGRTLNATQSDLASKVRSFVAEARDAAHVGDWTRASNAAKKAQVLSEELARSL
Ga0209647_12118862	3300026319	Grasslands Soil	PQIAPQLTAAETSAAQRQTRQSLSVAQRNIGAAEGKTLNATQQDLASKVRSFMAEAREAANSGDWTRARNAAKKAEVLSQELASSL
Ga0209648_104075591	3300026551	Grasslands Soil	TAAETSAAQQQTGQSLSIAERNIASADGKSLNATQQDLASKVRSFMAEARDAAHNGDWTRARNAAKKAEVLSQELASSL
Ga0209648_104079841	3300026551	Grasslands Soil	TAAETSAAQQQTGQSLSIAERNIASADGKSLNATQQDLASKVRSFMAEARDAAHNGDWTRARNAAKKAEVLSQELAGSL
Ga0208365_10308282	3300027070	Forest Soil	QSMPQRPRVAAAPPGPSNTARPEPPQIAPQLTAQEAAAAEQQTNVSLNIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0208241_10680001	3300027297	Forest Soil	PEPPQIAPQLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0209733_11653632	3300027591	Forest Soil	RVPVSAPPQTEAPVKADVPQLAPQLSAAETSAAQQQTNQSLGIAEKNMGATEGKTLNAAQQDLASKVRSFMAEAQEAVRTADWIRARNAAKKAEVLSQELAGSFQ
Ga0209217_10057763	3300027651	Forest Soil	VPQIAPQLTPAETGAAQQQTSNSLSVAERNIGSAAGKALNATQQDLASKVRSFMVEAREAANSGDWTRARNAAKKAEVLSQELASSL
Ga0209007_11514171	3300027652	Forest Soil	EEAAAAQQQTNLSLSIAERNIAASQGRMLNAAQSDLASKVRSFVTEARDAAHVGDWTRASSAAKKAQVLSEELARSL
Ga0209011_12197751	3300027678	Forest Soil	PSPLAIVQSAPQRPRVPAAPSQNAAARPEPPQIMPQLTAEETTAAQQQTNVSLSIAERNIAVTQGKSLNPAQVDLASKVRSFVTEARESAHVGDWTRARSAAKKAQVLSEELVNSL
Ga0209908_101988362	3300027745	Thawing Permafrost	LSLSIAERNIAASQGRMLNAAQSDLASKVRSFVTEARDAAHVGDWTRASSAAKKAQVLSEELARSL
Ga0209580_103311331	3300027842	Surface Soil	QNEAPAKTDVPQLAPQLGAAETSAAQQQTSQSLEIAQRNIGASEGKTLNAAQQDLASKVRIFISEAQDAARTGDWIRARNAAKKAEVLSQELAGSL
Ga0209180_100690593	3300027846	Vadose Zone Soil	VQIAPQLSAEETSAAQQQTNQSLGIAEKNIDASKGKKLNAAQQDLASKVRSFVAEAREAARTGDWLRARNAAKKAEVLSQELAGSL
Ga0209166_100297091	3300027857	Surface Soil	DVPQLAPQLGAAETSAAQQQTNQSLDIAQRNIGASEGKTLNAAQQDLASKVRSFIAEAREAVRTGDWIRARNAAKKAEVLSQELASSL
Ga0209701_104568021	3300027862	Vadose Zone Soil	QQQTSQSLSVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKLGDWTRARAAAKKAEVLSQELASSL
Ga0209275_103801452	3300027884	Soil	QTSTSVNIAEKNIAAAQGRSLNAMQSDLASKVRSFLAEAREAANVGDWTRASNAAKKAEVLSQELASSL
Ga0209380_100420431	3300027889	Soil	PPQIAPQLTAQEAAAAEQQTNVSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0209006_102791622	3300027908	Forest Soil	TNMSLSIAERNIAASQGKSLNPTQSDLASKVRSFVTEAREAAHSGDWTRASNAAKKAQVLSEELARSL
Ga0137415_102775811	3300028536	Vadose Zone Soil	QIAPQLTAAETSAAQQQTSQSLSVAERNISSAGGRTLNATQQDLASKIRSFMAEARDAANIGDWTRARNAAKKAEVLSQELASSL
Ga0302232_105395922	3300028789	Palsa	PEETAAAQQQTGNSLGIAEKNIGSARGKALNRTQLDLASKVRSFVAEAREASQAGDWTRARNAAKKAEVLSEELVGSL
Ga0302228_100850512	3300028808	Palsa	VPELTPEETAAAQQQTGNSLGIAEKNIGSARGKALNRTQLDLASKVRSFVAEAREASQAGDWTRARNAAKKAEVLSEELVGSL
Ga0308309_102513502	3300028906	Soil	QLTAEETAAAQQQTNLSLSIAERNLAAARGRMLNAAQSDLASKVRNFVNEARDAAHVGDWTRASSAAKKAQVLSEELAASL
Ga0302310_100668941	3300030737	Palsa	GNSLGIAEKNIGSARGKALNRTQLDLASKVRSFVAEAREASQAGDWTRARNAAKKAEVLSEELVGSL
Ga0170824_1270225751	3300031231	Forest Soil	PSVSVAEKNIAASQGRSLNPMQSDLASKVRSFLAEAREAAHVGDWTRAGNAAKKAEVLSQELAGSF
Ga0310686_1006069632	3300031708	Soil	LTAEETLAAQQQTNVSLSIAERNIGTAHGRNLNSTQLDLASKVRSFITEAREAAHIGDWTRARNAAKKAQVLSEELASSL
Ga0310686_1127108061	3300031708	Soil	PEPPQIAPQLTAEETAAAQQQTNLSLSIAERNITASQGRALNAAQSDLASKVRSFVTEARDAAHVGDWTRASNAAKKAQVLSEELARTL
Ga0310813_113182102	3300031716	Soil	IVPQLTAQETEAAQQQTNLSLSIAERNVGFTRGRTLNAAQSDLVSKVRSYVTEAREAAHNGDWTRASNAAKKAQVLSEELARSL
Ga0307474_102999311	3300031718	Hardwood Forest Soil	SQSLSVAEHNIGSADGKSLNATQQDLASKVRSFMAEARDAAKIGDWTRARAAAKKAEVLSQELASSL
Ga0307469_107352831	3300031720	Hardwood Forest Soil	AEQQTNASLSIAERNVGATRGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSL
Ga0307468_1011046111	3300031740	Hardwood Forest Soil	VPQLAPQLSAAETNAAQQQTSQSLGIAEKNMGASEGKTLNAAQQDLASKVRSFMAEAQEAVRTADWIRARNAAKKAEVLSQELASSFQ
Ga0307475_107329981	3300031754	Hardwood Forest Soil	VAPAPSGQNAAARPEPPQIMPQLTAEETTAAQQQTNVSLSIAERNISVTQGKTLNPTQLDLASKVRSFVTEARESAHTGDWQRARNAAKKAQVLSEELVSSL
Ga0307475_111615031	3300031754	Hardwood Forest Soil	SSPSRPEAPQIAPQLTAEERAAAEQQTNLSLSIAERNISASQGRTLNPTQSDLASKVRSFVTEAREAAHLGDWTRATNAAKKAQVLSEELARSL
Ga0306919_115357791	3300031879	Soil	AAQQQTNLSLSNAERNMVTAQGRSLNAGQLDLASKIRSFIAEAHDAAHNNDWTRARDAAKKAEVLSQQLADSIR
Ga0307471_1036811981	3300032180	Hardwood Forest Soil	SGGSSGTKFEPPTIVPQLPAQEAEAAQQQTNVSLSIAERNVGAAQGRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSM
Ga0307472_1007010012	3300032205	Hardwood Forest Soil	PRVPVIPSGGGSGTKFEPPTIVPQLTAQEAEAAQQQTNVSLSIAERNVGAAQRRTLNPQQSDLVSKVRSFVSEAREAAHNGDWMRASNAAKKAQVLSEELARSM
Ga0335080_111466841	3300032828	Soil	NAEKFVPPQIVPELTPQETAAAQQQTNVSLSIAEQNISAAQGKKLNAMQLDLASKVRSFVTEAREAAHIGDWTRASSAAKKAQVLSEELARSLSPS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084631

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign