Metagenome Family F084629

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084629
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	60 residues
Representative Sequence	MEMQRGVCVIDLFGVSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL
Number of Associated Samples	87
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.00 %
% of genes near scaffold ends (potentially truncated)	29.46 %
% of genes from short scaffolds (< 2000 bps)	82.14 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (23.214 % of family members)
Environment Ontology (ENVO)	Unclassified (23.214 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.107 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 20.45% Coil/Unstructured: 79.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00226	DnaJ	51.79
PF00582	Usp	4.46
PF02922	CBM_48	3.57
PF01053	Cys_Met_Meta_PP	2.68
PF07681	DoxX	1.79
PF01336	tRNA_anti-codon	0.89
PF03795	YCII	0.89
PF00884	Sulfatase	0.89
PF01797	Y1_Tnp	0.89
PF00211	Guanylate_cyc	0.89
PF14417	MEDS	0.89
PF01243	Putative_PNPOx	0.89
PF02322	Cyt_bd_oxida_II	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	2.68
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	2.68
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	2.68
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	2.68
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	2.68
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	2.68
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	2.68
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	2.68
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	2.68
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	2.68
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	2.68
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.79
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.79
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.89
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.89
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.89
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.18 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	38.39 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	38.39 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	35.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	38.39 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	35.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.39 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	30.36 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.79 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.39 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	30.36 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1.79 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig506594	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	898	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101778636	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	779	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101779052	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	931	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101781464	All Organisms → cellular organisms → Bacteria	2177	Open in IMG/M
3300002899\|JGIcombinedJ43975_10022360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1017	Open in IMG/M
3300002899\|JGIcombinedJ43975_10075938	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M
3300003319\|soilL2_10078869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1214	Open in IMG/M
3300003324\|soilH2_10379998	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1788	Open in IMG/M
3300003993\|Ga0055468_10015356	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
3300003993\|Ga0055468_10124818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	747	Open in IMG/M
3300003996\|Ga0055467_10153689	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	690	Open in IMG/M
3300005158\|Ga0066816_1028302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300005164\|Ga0066815_10006487	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1320	Open in IMG/M
3300005187\|Ga0066675_10760304	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	730	Open in IMG/M
3300005289\|Ga0065704_10217829	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1085	Open in IMG/M
3300005294\|Ga0065705_10016303	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1838	Open in IMG/M
3300005294\|Ga0065705_10153494	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1903	Open in IMG/M
3300005445\|Ga0070708_101760174	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300005536\|Ga0070697_100011028	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7059	Open in IMG/M
3300005553\|Ga0066695_10211866	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300005554\|Ga0066661_10460302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	775	Open in IMG/M
3300005556\|Ga0066707_10642242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300006049\|Ga0075417_10281227	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300006049\|Ga0075417_10351247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	722	Open in IMG/M
3300006173\|Ga0070716_100613919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	820	Open in IMG/M
3300006844\|Ga0075428_101169113	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	811	Open in IMG/M
3300006845\|Ga0075421_101354154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	785	Open in IMG/M
3300006847\|Ga0075431_100629697	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1054	Open in IMG/M
3300006852\|Ga0075433_10269931	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1508	Open in IMG/M
3300006852\|Ga0075433_10968276	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	741	Open in IMG/M
3300006852\|Ga0075433_11875515	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300006880\|Ga0075429_101427896	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300006903\|Ga0075426_10192856	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300006904\|Ga0075424_100571293	All Organisms → cellular organisms → Bacteria → Proteobacteria	1208	Open in IMG/M
3300007076\|Ga0075435_101360674	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300009081\|Ga0105098_10033010	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300009081\|Ga0105098_10062135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1545	Open in IMG/M
3300009100\|Ga0075418_10114713	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2861	Open in IMG/M
3300009100\|Ga0075418_10376154	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300009100\|Ga0075418_10627691	All Organisms → cellular organisms → Bacteria → Proteobacteria	1157	Open in IMG/M
3300009131\|Ga0115027_10065439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1947	Open in IMG/M
3300009137\|Ga0066709_100004227	All Organisms → cellular organisms → Bacteria	11362	Open in IMG/M
3300009147\|Ga0114129_10302550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2131	Open in IMG/M
3300009147\|Ga0114129_11713141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	767	Open in IMG/M
3300009147\|Ga0114129_13272340	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300009168\|Ga0105104_10142879	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1293	Open in IMG/M
3300009798\|Ga0105060_125772	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300009809\|Ga0105089_1005669	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300009811\|Ga0105084_1002308	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300009821\|Ga0105064_1004781	All Organisms → cellular organisms → Bacteria	2250	Open in IMG/M
3300009823\|Ga0105078_1015725	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	844	Open in IMG/M
3300009837\|Ga0105058_1085339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	731	Open in IMG/M
3300012021\|Ga0120192_10041928	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	793	Open in IMG/M
3300012022\|Ga0120191_10006027	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1341	Open in IMG/M
3300012096\|Ga0137389_11294231	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300012201\|Ga0137365_10331194	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1126	Open in IMG/M
3300012204\|Ga0137374_10072774	All Organisms → cellular organisms → Bacteria	3375	Open in IMG/M
3300012204\|Ga0137374_11182236	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	537	Open in IMG/M
3300012205\|Ga0137362_11564084	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300012208\|Ga0137376_10107522	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300012209\|Ga0137379_10490092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1137	Open in IMG/M
3300012349\|Ga0137387_10017354	All Organisms → cellular organisms → Bacteria	4401	Open in IMG/M
3300012353\|Ga0137367_10125697	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1880	Open in IMG/M
3300012353\|Ga0137367_10691208	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	711	Open in IMG/M
3300012354\|Ga0137366_11008556	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	579	Open in IMG/M
3300012355\|Ga0137369_10721327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684	Open in IMG/M
3300012361\|Ga0137360_10398414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1160	Open in IMG/M
3300012361\|Ga0137360_10849687	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	786	Open in IMG/M
3300012362\|Ga0137361_10365067	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1325	Open in IMG/M
3300012582\|Ga0137358_10202453	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1355	Open in IMG/M
3300012929\|Ga0137404_10508905	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300012930\|Ga0137407_10163528	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300012957\|Ga0164303_10065369	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1675	Open in IMG/M
3300012989\|Ga0164305_10191009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1431	Open in IMG/M
3300018053\|Ga0184626_10021319	All Organisms → cellular organisms → Bacteria	2632	Open in IMG/M
3300018053\|Ga0184626_10021826	All Organisms → cellular organisms → Bacteria → Proteobacteria	2603	Open in IMG/M
3300018075\|Ga0184632_10020092	All Organisms → cellular organisms → Bacteria	2827	Open in IMG/M
3300018078\|Ga0184612_10632407	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300018081\|Ga0184625_10036194	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300018081\|Ga0184625_10490257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300018422\|Ga0190265_12049225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	677	Open in IMG/M
3300018433\|Ga0066667_12065335	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300019789\|Ga0137408_1195637	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300021178\|Ga0210408_10117163	All Organisms → cellular organisms → Bacteria	2099	Open in IMG/M
3300022534\|Ga0224452_1203012	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300025910\|Ga0207684_11392142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300025922\|Ga0207646_10407872	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1227	Open in IMG/M
3300026298\|Ga0209236_1294164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300026331\|Ga0209267_1129490	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1057	Open in IMG/M
3300026529\|Ga0209806_1050315	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1961	Open in IMG/M
3300027277\|Ga0209846_1000657	All Organisms → cellular organisms → Bacteria	5819	Open in IMG/M
3300027862\|Ga0209701_10384733	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	786	Open in IMG/M
3300027873\|Ga0209814_10009100	All Organisms → cellular organisms → Bacteria	3891	Open in IMG/M
3300027873\|Ga0209814_10369006	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	629	Open in IMG/M
3300027873\|Ga0209814_10417145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	591	Open in IMG/M
3300027880\|Ga0209481_10241250	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	909	Open in IMG/M
3300027880\|Ga0209481_10275222	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	851	Open in IMG/M
3300027909\|Ga0209382_10164172	All Organisms → cellular organisms → Bacteria → Proteobacteria	2565	Open in IMG/M
3300027909\|Ga0209382_10537309	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1282	Open in IMG/M
3300027909\|Ga0209382_11756011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300030006\|Ga0299907_10195787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1669	Open in IMG/M
3300031446\|Ga0170820_11550731	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1182	Open in IMG/M
3300031720\|Ga0307469_10184281	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300031720\|Ga0307469_10355412	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1232	Open in IMG/M
3300031720\|Ga0307469_10670799	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	936	Open in IMG/M
3300031820\|Ga0307473_10837473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300031962\|Ga0307479_11769591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300032180\|Ga0307471_101918719	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	741	Open in IMG/M
3300032205\|Ga0307472_101615819	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	637	Open in IMG/M
3300034115\|Ga0364945_0247120	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300034150\|Ga0364933_217612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300034176\|Ga0364931_0128009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	813	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.89%
Host-Associated	Host-Associated	24.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.39%
Plants	Host-Associated → Plants	24.11%
Aquatic	Environmental → Aquatic	12.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.21%
Sediment	Environmental → Aquatic → Sediment	6.25%
Freshwater	Environmental → Aquatic → Freshwater	3.57%
Marine	Environmental → Aquatic → Marine	2.68%
Floodplain	Environmental → Terrestrial → Floodplain	2.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.25%
Sand	Environmental → Terrestrial → Soil → Sand	6.25%
Loam	Environmental → Terrestrial → Soil → Loam	4.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.57%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.25%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.68%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	23.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.25%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.25%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.68%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.68%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	1.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.79%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300005158	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009798	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_40_50	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_09104730	2124908045	Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGGHCLSL
INPhiseqgaiiFebDRAFT_1017786362	3300000364	Soil	MELERWICVIDLFGVSYDGTMPSIVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
INPhiseqgaiiFebDRAFT_1017790522	3300000364	Soil	MDMQPGVCVIDLFGMSXDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
INPhiseqgaiiFebDRAFT_1017814642	3300000364	Soil	MEKQPGICVIDLFGVSYDGILPSIVFACDEVWFGLFAVAPPNPPDLESAARPDGRHCLSL
JGIcombinedJ43975_100223601	3300002899	Soil	MDMQPGVCVIDLFGVSYDGTLPSIVFVSDEVWFGIFAVAPPNPPNLESAGRPEGRHCLSL
JGIcombinedJ43975_100759381	3300002899	Soil	RQETLRSLSRSEKMELERWICVIDLFGVSYDGTMPSIVLACDETWLGLFPVAPPNPPXVESHPDGRLCLTL*
soilL2_100788692	3300003319	Sugarcane Root And Bulk Soil	QRWTCVIDWFGRTYDGTIPDIVFACDETWLGLFPVAPPNPSAIESGDGPDGRFFPIR*
soilH2_103799983	3300003324	Sugarcane Root And Bulk Soil	MDPQRWTCVIDWFGRSYDGTMPDIVFACDETWLGLFPVAPPNPPAIESGDGPDGRFFPIR
Ga0055468_100153563	3300003993	Natural And Restored Wetlands	MGGKMEMQRWTLVIDLFGKSYDGMMPSIVFTCDELWLGIFAVAPPNPPAVESHPEGRSYLVP*
Ga0055468_101248182	3300003993	Natural And Restored Wetlands	METQRWACVIDLFGVSYDGTLPFIMLVCDESWLGLFAVAPPNPPALEAGDRPD
Ga0055467_101536891	3300003996	Natural And Restored Wetlands	LIDSTGVSMETQRWACVIDLFGVSYDGTLPFIMLVCDESWLGLFAVAPPNPPALEAGDRPDGRVSYSR*
Ga0066816_10283021	3300005158	Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLPSAGRPKGRHCLSL
Ga0066815_100064872	3300005164	Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGGIVSLFEGRERVLRCFG*
Ga0066675_107603041	3300005187	Soil	MEMQSHQICVIDLFGVSYDGTMPSIVFACDETWLGLFAVGPPNPPAVEAADRPDGRLCLFL*
Ga0065704_102178292	3300005289	Switchgrass Rhizosphere	MELERWICVIDLFGVSYDGTIPSIVLACDETWLGLFPVAPPNPPAVESRPDGRLCLTL*
Ga0065705_100163034	3300005294	Switchgrass Rhizosphere	MDMQPGVCVIDLFGVSYDGTLPSIVFVSDEVWFGIFAVAPPNPPNLESAGRPEGQHCLSL
Ga0065705_101534941	3300005294	Switchgrass Rhizosphere	MERQPGVCVIDLFGVSYDGTLPSIVFACDEVWFGLFAVAPPNPPDLESAARPDGRHCLSL
Ga0070708_1017601741	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MEMQPGVCLIDLFGVSYDGILPSVVFACDEIWFGLFAVAPPNPPDLESAARPEGRHCLSL
Ga0070697_1000110281	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MEFDHWICVIDLFGVSYDGTLPSIALACDENWLGLFAVAPPNPPAVESRPDGRLYLVI*
Ga0066695_102118661	3300005553	Soil	MDSQRWTCVIDLFGKNYDGTMPSIVFTCDETWLGLFPVAPPNPRVIESGERPDGRLFFS*
Ga0066661_104603022	3300005554	Soil	MEFDHWICVIDLFGVSYDGTLPSIALACDENWLGLFAVAPPNPPAVESRPDGRLCLAI*
Ga0066707_106422421	3300005556	Soil	MLEPIEQERKMEMQSHQICVIDLFGVSYDGTMPSIVFACDETWLGLFAVGPPNPPAVEAADRPDGRLCLFL*
Ga0075417_102812271	3300006049	Populus Rhizosphere	MELERWICVIDLFGVSYDGAMPSTVLACDETWLGLFPVAPPNPPAVESHPDGRLCLT
Ga0075417_103512472	3300006049	Populus Rhizosphere	MELERWTCVIDLFGVSYDGTMPSIMLACDETWLGLFPVAPPNPPAVESHPDGRLCLT
Ga0070716_1006139192	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEFDHWICVIDLFGVSYDGTLPSIALACDETWLGLFAVAPPNPPAVESRPDGRLYLVI*
Ga0075428_1011691132	3300006844	Populus Rhizosphere	MELERWTCVIDLFGVSYDGTMPSIMLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0075421_1013541542	3300006845	Populus Rhizosphere	MELERWICVIDLFGVSYDGAMPSIVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0075431_1006296971	3300006847	Populus Rhizosphere	MELERWICVIDLFGVSYDGTMPSIMLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0075433_102699313	3300006852	Populus Rhizosphere	TLPSIVFACDEVWFGLFAVAPPNPPDLESAARPDGRHCLSL*
Ga0075433_109682762	3300006852	Populus Rhizosphere	RRQEILRSLSRSEKMELERWICVIDLFGVSYDGAMPSTVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0075433_118755151	3300006852	Populus Rhizosphere	MDMQPGVCVIDLFGMSYDGTLPSIVFAYDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL
Ga0075429_1014278961	3300006880	Populus Rhizosphere	MELERWICVIDLFGVSYDGAMPSTVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0075426_101928561	3300006903	Populus Rhizosphere	LSRSEKMELERWICVIDLFGVSYDGTMPSIMLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0075424_1005712933	3300006904	Populus Rhizosphere	VIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL*
Ga0075435_1013606741	3300007076	Populus Rhizosphere	MEVRHWDCVIDLFGVSYDGTLPSIALACDESWLGLFAVAPPTPPALESADRPEGRL
Ga0105098_100330102	3300009081	Freshwater Sediment	MDMQPGVCVIGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL*
Ga0105098_100621352	3300009081	Freshwater Sediment	VSYDGTLPSIVFACDEVWFGLFAVAPPNPPDLETAARPDGRQSLGQEDLAV
Ga0075418_101147134	3300009100	Populus Rhizosphere	MDLHKWTCVIDLFGKNYDGTMPSIVFACDETWLGLFPVAPPSPVIESGDRPDGRLFFS*
Ga0075418_103761543	3300009100	Populus Rhizosphere	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLFESRERVLRCFG*
Ga0075418_106276911	3300009100	Populus Rhizosphere	VSYDGTLPSIVFACDEVWFGLFAVAPPNPPDVESAARSDGRHSLSL*
Ga0115027_100654391	3300009131	Wetland	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLFL
Ga0066709_1000042276	3300009137	Grasslands Soil	MDSQRWTCVIDLFGKNYDGTMPSIVFTCDETWLGLFPVAPPNPPVIESGERPDGRLFFS*
Ga0114129_103025501	3300009147	Populus Rhizosphere	MDSQRWTCVIDWFGKNYDGTMPSIVFTCDETWLGQFAVAPPNPPAIESGDRPDGRFFPSP
Ga0114129_117131411	3300009147	Populus Rhizosphere	KMDLQRWTCVIDLFGKNYDGTMPSIVFACDETWLGLFPVAPPSPVIESGDRPDGRLFFS*
Ga0114129_132723401	3300009147	Populus Rhizosphere	MELERWICVIDLYGVSYDGTMPSIVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0105104_101428792	3300009168	Freshwater Sediment	MAMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL
Ga0105060_1257722	3300009798	Groundwater Sand	MDMQPGVCVIDLFGMSYHGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL
Ga0105089_10056691	3300009809	Groundwater Sand	EPKMDMQPGVCVIDLFGVSYDGTLSSIVFVSDEVWFGIFAVAPPNPPDLESAGRPEGRDCLSL*
Ga0105084_10023084	3300009811	Groundwater Sand	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGPEGRHCLSL*
Ga0105064_10047813	3300009821	Groundwater Sand	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPKPPNLESSGRPEGRHCLSL
Ga0105078_10157252	3300009823	Groundwater Sand	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEG
Ga0105058_10853392	3300009837	Groundwater Sand	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPKPPDLESAGRPEGRHCLSL
Ga0120192_100419281	3300012021	Terrestrial	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAVVPRGG
Ga0120191_100060271	3300012022	Terrestrial	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAVVPRGGIVSLFESRERVLRCFG*
Ga0137389_112942311	3300012096	Vadose Zone Soil	MEVRHWDCVIDLFGVSYDGTLPSIALACDESWLGLFAVAPPTPPALESADRPDGQLCLFI
Ga0137365_103311943	3300012201	Vadose Zone Soil	DLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL*
Ga0137374_100727746	3300012204	Vadose Zone Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGQHCLSL
Ga0137374_111822361	3300012204	Vadose Zone Soil	SRSEKMELERWICVIDLFGVSYDGTMPSIVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0137362_115640841	3300012205	Vadose Zone Soil	MDMQPGVCVIDLFGVSYDGILPSVVLACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0137376_101075222	3300012208	Vadose Zone Soil	MELERWICVIDLFGVSYDGTMPSIALACDETWLGLFPVAPPNPPAVESRPDGRLCLTL*
Ga0137379_104900921	3300012209	Vadose Zone Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFTVAPPNPPDLESAGRPEGRHCLSL
Ga0137387_100173543	3300012349	Vadose Zone Soil	MLEPIEQERKMEMQSHQICVIDLFGVSYDRTMPSIVFACDETWLGLFAVGPPNPPAVEAADRPDGRLCLFL*
Ga0137367_101256973	3300012353	Vadose Zone Soil	MELERWICVIDLFGVSYDGTMPSIVLACDEPWLGLFPVAPPNPPAVESHPDGRLCLTL*
Ga0137367_106912082	3300012353	Vadose Zone Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPSNLESAGRPEGRHCLSL
Ga0137366_110085562	3300012354	Vadose Zone Soil	MELERWICVIDLFGVSYDGTMPSIVLACDETWLGLFPVAPPNPPAVESRPDGRLCLTL*
Ga0137369_107213272	3300012355	Vadose Zone Soil	MTLPSVEEKRKMDSQRWACVIDLFGKNYDGTMPSIVFTCDETWLGLFPVAPPNPLAIESGDRPDGRFFPIP*
Ga0137360_103984142	3300012361	Vadose Zone Soil	MEFDHWICVIDLFGASYDGTLPSIALACDETWLGLFAVAPPNPPAVESRPDGRLYLVI*
Ga0137360_108496871	3300012361	Vadose Zone Soil	IDLFGVSYDGTMPSIVFACDETWLGLFAVGPPNPPAVEAADRPDGRLCLFL*
Ga0137361_103650673	3300012362	Vadose Zone Soil	WLAKCGFTPRSEKMEFDHWICVIDLFGVSYDGTLPSIALACDENWLGLFAVAPPNPPAVESRPDGRLCLAI*
Ga0137358_102024532	3300012582	Vadose Zone Soil	MSWSEKMEFDHWICVIDLFGVSYDGTLPSIALACDENWLGLFAVAPPNPPAVESRPDGRLCLAI*
Ga0137404_105089051	3300012929	Vadose Zone Soil	MKRQPGVCVIDLFGVSYDGTLPSIVFACDEIWFGIFAVAPPNPPDLESAARPDGRHS
Ga0137407_101635282	3300012930	Vadose Zone Soil	MERQPGVCVIDLYGVSYDGTLPGIVFACDEIWFGLFAVAPPNPPDLESAARPDGRHSLPL
Ga0164303_100653691	3300012957	Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEERHCLSL
Ga0164305_101910092	3300012989	Soil	MEIQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0184626_100213192	3300018053	Groundwater Sediment	MEMQRGVCVIDLFGVSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLDSAGRPEGRHCLSL
Ga0184626_100218263	3300018053	Groundwater Sediment	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0184632_100200922	3300018075	Groundwater Sediment	MSRAEEFFSGSNRRKKMEMQRGVCVIDLFGVSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL
Ga0184612_106324071	3300018078	Groundwater Sediment	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHC
Ga0184625_100361941	3300018081	Groundwater Sediment	MEMQRGVCVIDLFGVSYDGTLPSIVLACDEIWFGLFAVAPPNPPDLDSAGRPEGRHCLSL
Ga0184625_104902571	3300018081	Groundwater Sediment	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGGIVSLFESRERVLRCFG
Ga0190265_120492251	3300018422	Soil	HGSKKMDMQRGICVIDLFGVCYDGALPYIMLVSDETWLSLFAVAPPNPPALESSGRPDGRLDLYR
Ga0066667_120653351	3300018433	Grasslands Soil	MELERWICVIDLFGVSYDGTMPSIALACDETWLGLFPVAPPNPPAVESRPDGRLCLTL
Ga0137408_11956371	3300019789	Vadose Zone Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL
Ga0210408_101171632	3300021178	Soil	MEMQPGVCVIDLFGVSYDGTLPSVVFACDEIWFGLFAVAPPNPPDLESAARPEGRHCLSL
Ga0224452_12030122	3300022534	Groundwater Sediment	MEMQRGVCVIDLFGVSYDGTLPSIVFACDEIWFGLFAVAPPNPPDLESAGRPEGRHCLSL
Ga0207684_113921422	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MEVRHWDCVIDLFGVSYDGTLPSIALACDESWLGLFAVAPPTPPALESADRPEGRLCLFI
Ga0207646_104078722	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEIQPGVCVIDLFGVSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0209236_12941642	3300026298	Grasslands Soil	ELAMLEPIEQERKMEMQSHQICVIDLFGVSYDGTMPSIVFACDETWLGLFAVGPPNPPAVEAADRPDGRLCLFL
Ga0209267_11294902	3300026331	Soil	MLEPIEQERKMEMQSHQICVIDLFGVSYDGTMPSIVFACDETWLGLFAVGPPNPPAVEAADRPDGRLCLFL
Ga0209806_10503153	3300026529	Soil	MEMQSHQICVIDLFGVSYDGTMPSIVFACDETWLGLFAVGPPNPPAVEAADR
Ga0209846_100065710	3300027277	Groundwater Sand	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPKPPNLESAGRPEGRHCLSL
Ga0209701_103847331	3300027862	Vadose Zone Soil	MEVRHWDCVIDLFGVSYDGTLPSIALACDESWLGLFAVAPPTPPALESADRPDGRLCLFI
Ga0209814_100091005	3300027873	Populus Rhizosphere	MKRQPGVCVIDLFGVSYDGTLPSIVFACDEIWFGIFAVAPPNPPDVESAARSDGRHSLSL
Ga0209814_103690062	3300027873	Populus Rhizosphere	MELERWICVIDLFGVSYDGAMPSTVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL
Ga0209814_104171451	3300027873	Populus Rhizosphere	MELERWICVIDLFGVSYDGTMPSIMLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL
Ga0209481_102412502	3300027880	Populus Rhizosphere	VIDLFGVSYDGAMPSIVLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL
Ga0209481_102752221	3300027880	Populus Rhizosphere	MEKQPGICVIDLFGVSYDGTLPSIVFACDEVWFGLFAVAPPNPPDVESAARSDGRHSLSL
Ga0209382_101641723	3300027909	Populus Rhizosphere	MERQPGVCVIDLFGVSYDGTLPSIVFACDEVWFGLFAVAPPNPPDVESAARSDGRHSLSL
Ga0209382_105373092	3300027909	Populus Rhizosphere	MELERWTCVIDLFGVSYDGTMPSIMLACDETWLGLFPVAPPNPPAVESHPDGRLCLTL
Ga0209382_117560111	3300027909	Populus Rhizosphere	MDMQPGVCVIDLFGMNYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0299907_101957872	3300030006	Soil	MEIQRWACVIDLFGVSYDGTLPYIMLVCDEPWLSLFAVAPPNSPAVEAGDRPDGRVSLFR
Ga0170820_115507312	3300031446	Forest Soil	MDMQPGVCVIDLFGMSYDGTLPSIVFARDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0307469_101842812	3300031720	Hardwood Forest Soil	MDMQPGVCVIDLFGMSYDRTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0307469_103554121	3300031720	Hardwood Forest Soil	MEFDHWICVIDLFGVSYDGTLPSIALACDETWLGLFAVAPPSPPAVESRPDGRLYLVI
Ga0307469_106707992	3300031720	Hardwood Forest Soil	MEMQPGVCVIDLFGASYDGTLPSVVFACDEIWFGLFAVAPPNPPDLESAARPEGRHCLSL
Ga0307473_108374732	3300031820	Hardwood Forest Soil	MEFDHWICVIDLFGVSYDGTLPSIALACDETWLGLFAVAPPSPPAVESCPDGRLYLVI
Ga0307479_117695912	3300031962	Hardwood Forest Soil	MEMQPGVCVIDLFGVSYDGTLQSVVFACDEIWFGLFAVAPPNPPYLESAARPEGRHCLSL
Ga0307471_1019187192	3300032180	Hardwood Forest Soil	ASYDGTLPSVVFACDEIWFGLFAVAPPNPPDLESAARPEGRHCLSF
Ga0307472_1016158192	3300032205	Hardwood Forest Soil	MEMQPGVCVIDLFGVSYDGTLPSVVFACDEIWFGLFAVAPPNPPDLESAARPEGRH
Ga0364945_0247120_3_188	3300034115	Sediment	KMDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLS
Ga0364933_217612_141_323	3300034150	Sediment	MEMQPGVCVIDLFGVSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGRPEGRHCLSL
Ga0364931_0128009_2_172	3300034176	Sediment	MDMQPGVCVIDLFGMSYDGTLPSIVFACDEIWFGLFAVAPPNPPNLESAGCPEGRHC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084629

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences