NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F084627

Metagenome / Metatranscriptome Family F084627

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084627
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 40 residues
Representative Sequence AATIVAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Number of Associated Samples 96
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.41 %
% of genes near scaffold ends (potentially truncated) 91.96 %
% of genes from short scaffolds (< 2000 bps) 86.61 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.179 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(14.286 % of family members)
Environment Ontology (ENVO) Unclassified
(22.321 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.607 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.
1JGI12713J13577_10163941
2JGIcombinedJ26739_1005517532
3JGIcombinedJ26739_1010339402
4Ga0062385_110779421
5Ga0062386_1015181351
6Ga0070708_1002856753
7Ga0070731_106390882
8Ga0068856_1021308051
9Ga0066903_1016764462
10Ga0066903_1030193181
11Ga0070766_100248961
12Ga0070766_110675082
13Ga0075029_1004916211
14Ga0075029_1007168371
15Ga0075019_102998641
16Ga0070716_1006495942
17Ga0073928_105259273
18Ga0099794_105217802
19Ga0116137_10139201
20Ga0126373_120554171
21Ga0074045_100509691
22Ga0126378_106458271
23Ga0126379_103735982
24Ga0126381_1010074752
25Ga0150983_143300941
26Ga0137389_114231121
27Ga0137358_101151281
28Ga0182015_100801923
29Ga0182015_105984792
30Ga0182036_116691642
31Ga0182041_110199042
32Ga0182035_103961543
33Ga0182032_109309981
34Ga0182032_117342291
35Ga0182034_112752142
36Ga0182040_113280642
37Ga0182037_117955312
38Ga0182038_116822672
39Ga0187818_103950251
40Ga0187801_100514271
41Ga0187819_105235821
42Ga0187819_108394761
43Ga0187817_100072027
44Ga0187817_100627164
45Ga0187778_110688882
46Ga0187783_102638542
47Ga0187780_114251621
48Ga0187782_111366432
49Ga0187804_101259441
50Ga0187889_101213541
51Ga0187863_102252441
52Ga0187883_100260315
53Ga0187883_100543523
54Ga0187862_104522062
55Ga0187851_100485591
56Ga0187858_102029011
57Ga0210401_100002731
58Ga0210401_105380532
59Ga0210400_102609483
60Ga0210388_107578622
61Ga0210385_107966811
62Ga0210385_108057041
63Ga0210386_113099762
64Ga0210394_108993511
65Ga0210392_102669483
66Ga0126371_111849272
67Ga0242652_10520712
68Ga0242660_11468431
69Ga0224552_100047010
70Ga0209839_100350161
71Ga0209731_10518742
72Ga0209008_10629931
73Ga0209523_10081574
74Ga0209735_10956711
75Ga0208043_10187611
76Ga0209139_100489283
77Ga0209580_103336252
78Ga0209067_102440742
79Ga0209067_109579382
80Ga0209006_105058652
81Ga0302149_11783181
82Ga0302225_100692321
83Ga0302225_101598171
84Ga0302223_101336502
85Ga0302222_103762361
86Ga0302230_101690522
87Ga0308309_105050521
88Ga0311340_104351973
89Ga0311357_102017313
90Ga0302317_103687571
91Ga0302309_105920042
92Ga0265760_100383322
93Ga0302325_115920872
94Ga0170820_158558382
95Ga0310686_1048677762
96Ga0318501_105390552
97Ga0306918_110399881
98Ga0307475_103329972
99Ga0307478_103927951
100Ga0318517_102131562
101Ga0306923_125138882
102Ga0306921_119686802
103Ga0310912_104521232
104Ga0310912_113517462
105Ga0306926_130247651
106Ga0307479_100285417
107Ga0307479_117638421
108Ga0318540_103982271
109Ga0311301_109857921
110Ga0306920_1011208771
111Ga0306920_1023832381
112Ga0326724_0050188_2919_3044
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
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Variant

510152025303540AATIVAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
65.2%34.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Tropical Peatland
Bog Forest Soil
Soil
Palsa
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Palsa
Bog
Peat Soil
Corn Rhizosphere
6.2%6.2%4.5%4.5%14.3%13.4%3.6%3.6%8.0%8.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12713J13577_101639413300001151Forest SoilAKHYGSRDAMFEAARKRSEIRDVVASHLAREVMPK*
JGIcombinedJ26739_10055175323300002245Forest SoilAPIAVKHYGSRDAMFEAARKRSEIRDVVASHLAREVMPK*
JGIcombinedJ26739_10103394023300002245Forest SoilTTIVVKHYGTREAMVEVGKKRADLREIVASHLAREVTPK*
Ga0062385_1107794213300004080Bog Forest SoilKAATIVVKHYGSREAAFESARKRSDIRDVVASHLAREVMPK*
Ga0062386_10151813513300004152Bog Forest SoilATVVAKHYGSRDAMLEAGKKRQDYREVVMSKLAREVMPK*
Ga0070708_10028567533300005445Corn, Switchgrass And Miscanthus RhizosphereVTPGATIAAKHYGSRDAMIDAGKKRNEIREVVASKLAREVMPK*
Ga0070731_1063908823300005538Surface SoilIAKHYGSRDAMIEAGKKRNDLREVVASKLAREVMPR*
Ga0068856_10213080513300005614Corn RhizosphereDAKAATVVAKHYGSRDAMIEAGKKRNDLRDVVMSKLGREVMPK*
Ga0066903_10167644623300005764Tropical Forest SoilLDAVDAKAATIVAKHYGSRDAMIDAGKKRNELRTVVASKLAREVMPK*
Ga0066903_10301931813300005764Tropical Forest SoilVVTKHYGSREAQMEAAKKRTESREVVASHLAREVIPK*
Ga0070766_1002489613300005921SoilSVAKHYGSRDAMIEAGKKRAELREVVASKLAREVMPK*
Ga0070766_1106750823300005921SoilTSVAKHYGSRDAMIEAGKKRNELREVVASKLAREVMPK*
Ga0075029_10049162113300006052WatershedsATTLVAKHYGSREAMLEAGKKRNELRDVVSNKLAREVMPK*
Ga0075029_10071683713300006052WatershedsAKHYGSREAMLEAGKKRNELREVVASKLAHEVIPK*
Ga0075019_1029986413300006086WatershedsAKHYGSRDAMLEAAKKRNDIRELVASKLAHEVMPK*
Ga0070716_10064959423300006173Corn, Switchgrass And Miscanthus RhizosphereKHYGSRDAMIDAGKKRNDLREVVMSKLAREVMPK*
Ga0073928_1052592733300006893Iron-Sulfur Acid SpringAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK*
Ga0099794_1052178023300007265Vadose Zone SoilDAKAATIVAKHYGSRDAMIDAGKRRNEIREVVASKLAREVMPK*
Ga0116137_101392013300009549PeatlandTKHYGSRDAMLYAAKKRNEIREVVASKLAHEVMPK*
Ga0126373_1205541713300010048Tropical Forest SoilMRKAATISAKHYGSRDAMLEAAKKRNDIRDVMMSKLAHELMPK*
Ga0074045_1005096913300010341Bog Forest SoilGKAVTISTKHYGSRDAMLDAAKKRSEIREVVASKLAREVMPK*
Ga0126378_1064582713300010361Tropical Forest SoilAATIIAKHYGSREAAFEAARKRSDLREVIASHLAREVTPK*
Ga0126379_1037359823300010366Tropical Forest SoilMRKAATISAKHYGSRDAMLEAAKKRNDIRDVVMSKLAHEVMPK*
Ga0126381_10100747523300010376Tropical Forest SoilMRKAATTSAKHYGSRDAMLEAAKKRNDIRDVIMSKLAHEVMPK*
Ga0150983_1433009413300011120Forest SoilAATIVAKHYGSRDAMLEANKKRTDLRELVMSKLAREVMPK*
Ga0137389_1142311213300012096Vadose Zone SoilAEKHYGSREAMNDAARKRDDIREVVASHLAREVMPK*
Ga0137358_1011512813300012582Vadose Zone SoilQLDAKAATSVAKHYGSREAMIEAGKKRNDLREVVASKLAREVMPK*
Ga0182015_1008019233300014495PalsaDAKATPIVVKHYGSRESAFEAARKRSEIRDVVASHLAHEVIPK*
Ga0182015_1059847923300014495PalsaAATIVAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK*
Ga0182036_1166916423300016270SoilAKAATISAKHYGSREAMIEAGKKRSEIREVVMSKLAREVLPK
Ga0182041_1101990423300016294SoilDAKAATIAAKHYGSRDAMIEAGKKRNDLREVVASKVAREVMPK
Ga0182035_1039615433300016341SoilAKHYGSRDAMLDAAKKRNEIREVVMSKLAHEVMPK
Ga0182032_1093099813300016357SoilDTVDAKAATIAAKHYGSRDAMIEAGKKRNDLREVVASKVAREVMPK
Ga0182032_1173422913300016357SoilIAAKHYGSREAMIEAGKKRNDLREVVASKLAREVTPK
Ga0182034_1127521423300016371SoilVVKHYGSREAAFEAAKKRAEIREVVGSHLAREVTPK
Ga0182040_1132806423300016387SoilAKAATISAKHYGSRDAMLDAAKKRNDIRDVVMSKLAHEVMPK
Ga0182037_1179553123300016404SoilQLDAKAGAVVTKHYGSREAQMEAAKKRTESREVVASHLAREVTPK
Ga0182038_1168226723300016445SoilDAKAATISAKHYGSRDAMLDAAKKRNDIRDVVMSKLAHEVMPK
Ga0187818_1039502513300017823Freshwater SedimentATIIAKHYGSREAMIEAGKKRNDIREVVASKLAREVMPK
Ga0187801_1005142713300017933Freshwater SedimentKAATIIAKHYGSREAMIEAGKKRNDLREVVASKLAREVMPK
Ga0187819_1052358213300017943Freshwater SedimentLDQSDAKAATIVVKHYGSREAAFEAARKRSDIREVVASHLAREVMPK
Ga0187819_1083947613300017943Freshwater SedimentQLDSKAATVVTKHYGSRDAMLEAGRKRNELRDVVLSKLAHEVMPK
Ga0187817_1000720273300017955Freshwater SedimentIIAKHYGSREAMIEAGKKRNDIREVVASKLAREVMPK
Ga0187817_1006271643300017955Freshwater SedimentIAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187778_1106888823300017961Tropical PeatlandIDARAATIAAKHYGSREAMIEAGKKRIEIRFLVASKVAREVMPK
Ga0187783_1026385423300017970Tropical PeatlandLDAKAATIAAKHYGSRDAMIEAGKRRSELREVIASHLAREVMLK
Ga0187780_1142516213300017973Tropical PeatlandIDAKAGSLVTKHYGSREALMKAAKERNDIREVVASKVAREVTPK
Ga0187782_1113664323300017975Tropical PeatlandLDAKAATISAKHYGSREAMIEAGKKRAEFRDVIASHLAREVTLK
Ga0187804_1012594413300018006Freshwater SedimentAKAATISTKHYGSRDAMLEAAKKRNDIREVVASKLAREVTPK
Ga0187889_1012135413300018023PeatlandTILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187863_1022524413300018034PeatlandIAKHYGSREAMIEAGKKRNDIREVVASKLAHEVMPK
Ga0187883_1002603153300018037PeatlandQADARAATILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187883_1005435233300018037PeatlandQLDAHAATILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187862_1045220623300018040PeatlandTISTKHYGSRDAMLDAAKKRNEIREVVASKLAHEVMPK
Ga0187851_1004855913300018046PeatlandKAATIIAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187858_1020290113300018057PeatlandKAATSVAKHYGSRDAMIEAGKKRNDLREVVASKLAREVMPK
Ga0210401_1000027313300020583SoilKAATLVAKHYGSRDAMIEAGKKRQDLREVVMSKLAREVMPK
Ga0210401_1053805323300020583SoilGIDAKAATIVAKHYGSRDAMLEAGKKRQDLREVVMSKLAREVMPK
Ga0210400_1026094833300021170SoilATIVAKHYGSREAAFEAARKRSDFRDVVASHLAREVMPK
Ga0210388_1075786223300021181SoilAATLVAKNYGSRDAMIEAGKKRQDLREVVMSKLAREVMPK
Ga0210385_1079668113300021402SoilTSVAKHYGSRDAMIEAGKKRAELREVVASKLAREVMPK
Ga0210385_1080570413300021402SoilAKHYGSRDAAIEAGKMRAGLRDVVASHLAREVMLK
Ga0210386_1130997623300021406SoilAATIVAKHYGSRDAMIEAGKKRQDLREVVMSKLAREVMPK
Ga0210394_1089935113300021420SoilDAKAATIVAKHYGSRDAMIEAGKKRNDLREVVMSKLAREIMPK
Ga0210392_1026694833300021475SoilIDGIDAKAATIVAKHYGSRDAMLEAGKKRQDLREVVMSKLAREVMPK
Ga0126371_1118492723300021560Tropical Forest SoilMRKAATTSAKHYGSRDAMLEAAKKRNDIRDVMMSKLAHELMPK
Ga0242652_105207123300022510SoilLDAKGATISAKHYGSRDAMIEAGKKRNDLREVVASKLAREVTPK
Ga0242660_114684313300022531SoilAATIAAKHYGSRDAMIDAGKRRNEIREVVASKLAREVMPK
Ga0224552_1000470103300022850SoilAHAATILAKHYGSLEAMIEAGKKRNEIREVVASKLAREVMPK
Ga0209839_1003501613300026294SoilQIDAKAATISTKHYGSREAMLEAAKKRSEIREVVASKLAREVMPK
Ga0209731_105187423300027326Forest SoilIAAKHYGSRDAMIDAGKKRNELREVVASKLAREVMPK
Ga0209008_106299313300027545Forest SoilDQLDAKATPIIVKHYGSRDAAFEAVRKRSEIRDVVASHLAHEVMPK
Ga0209523_100815743300027548Forest SoilATIAAKHYGSRDAMIDAGKKRNELREVVASKLAREVVPK
Ga0209735_109567113300027562Forest SoilLDAKATPIVVKHYGSRESAFEAARKRSEIRDVVASHLAHELIPK
Ga0208043_101876113300027570Peatlands SoilIAKHYGSREAMIEAGKKRNEIRTVVASKLAREIMPK
Ga0209139_1004892833300027795Bog Forest SoilDAKATPIVVKHYGSREAAFEAARKRSEIREVVASHLAREVTPK
Ga0209580_1033362523300027842Surface SoilAKAASIAVKHYGSREAALEAARKRSDIRDVVASHLAREVTPK
Ga0209067_1024407423300027898WatershedsDAKAATIGAKHYGSRDAMLEAAKKRNDIRELVASKLAHEVMPK
Ga0209067_1095793823300027898WatershedsLVAKHYGSREAMLEAGRKRNELREVVSSKLAREVMPK
Ga0209006_1050586523300027908Forest SoilTIVAKHYGSRDAMLDAGKKRNDLREVVMSKLAREITPK
Ga0302149_117831813300028552BogHAATILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0302225_1006923213300028780PalsaTIKHFGSREAMLEAAKKRSDIRDVVASKLAREVTPK
Ga0302225_1015981713300028780PalsaIVTKHYGSREAMIEAGKRRTELREVIASHLAREVALK
Ga0302223_1013365023300028781PalsaDQLDAKAATISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0302222_1037623613300028798PalsaIDQADTKAATIIAKHYGSREAMIEAGKKRSEIREVVASKLAREVMPK
Ga0302230_1016905223300028871PalsaATISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0308309_1050505213300028906SoilATSVAKHYGSRDAMIEAGKKRAELREVVASKLAREVMPK
Ga0311340_1043519733300029943PalsaTIIAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0311357_1020173133300030524PalsaISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0302317_1036875713300030677PalsaDAKATPVVVKHYGSREAAFEAARKRSELRDVVASHLAHEVMPK
Ga0302309_1059200423300030687PalsaAATISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0265760_1003833223300031090SoilVTKTKHHGSREAMIEAGKKRSEIREVVASKLAREVTPK
Ga0302325_1159208723300031234PalsaMAKHYGSREAMIEAGKKRLEIRTVVASKLAREVTPK
Ga0170820_1585583823300031446Forest SoilVKHYGSREAGLEAAKKRAEIREVIASHLAREVMVK
Ga0310686_10486777623300031708SoilQIDAKAATIVVKHYGSREAAFEAARKRSDIRDVVASHLAREVMPK
Ga0318501_1053905523300031736SoilDAKAATISAKHYGSREAMLEAGKKRNDIREVVASKLAHEVTPK
Ga0306918_1103998813300031744SoilAKHYGSREAMIEAGKKRNDLREVVASKLAREVIPK
Ga0307475_1033299723300031754Hardwood Forest SoilISAKHYGSREAMIEAGKKRSEIREVVMSKLAREVLPK
Ga0307478_1039279513300031823Hardwood Forest SoilTIATKHYGSREAMIEAGKKRSELRDLVGSHLAREVMLK
Ga0318517_1021315623300031835SoilAVKHYGSREAAFEAQKKRAELRDVVGSHLAREVTPK
Ga0306923_1251388823300031910SoilDQLDAKAASIAVKHYGSREAAFEAQKKRAELRDVVGSHLAREVTPK
Ga0306921_1196868023300031912SoilIDAKAATISAKHYGSRDAMLDAAKKRNDIRDVVMSKLAHEVMPK
Ga0310912_1045212323300031941SoilDQIDAKAGTIAAKHYGSREAMIEAGKKRAETRQPVASKLAREVMPK
Ga0310912_1135174623300031941SoilDQIDAKAATISAKHYGSREAMIEAGKKRSEIREVVMSKLAREVLPK
Ga0306926_1302476513300031954SoilAGIVVKHYGSREAAFEAAKKRAEIREVVGSHLAREVTPK
Ga0307479_1002854173300031962Hardwood Forest SoilDAKAATSVAKHYGSREAMIEAGKKRNDLREVVASKLARQVMPK
Ga0307479_1176384213300031962Hardwood Forest SoilIATKHYGTREAMIEAGKKRADLREVIASHLAREVTPK
Ga0318540_1039822713300032094SoilASIVVKHYGSREAAFEAAKKRAEIREVVGSHLAREVTPK
Ga0311301_1098579213300032160Peatlands SoilAKHYGSREAMIEAGKKRTEIREVVMSKLAHEVLPK
Ga0306920_10112087713300032261SoilDQIDAKAATISAKHYGSRDAMLDAAKKRNEIREVVMSKLAHEVMPK
Ga0306920_10238323813300032261SoilATISAKHYGSREAMIEAGKKRNEIREVVMSKLAHEVMPK
Ga0326724_0050188_2919_30443300034091Peat SoilKAATISTKHYGSRDAMLEAAKKRNEIREVVASKLAHEVMPK


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