Metagenome / Metatranscriptome Family F084621

Basic Information
Family ID	F084621
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	53 residues
Representative Sequence	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEARARAELG
Number of Associated Samples	101
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.179 % of family members)
Environment Ontology (ENVO)	Unclassified (33.929 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.214 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 91.11% β-sheet: 0.00% Coil/Unstructured: 8.89%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00730	HhH-GPD	48.21
PF00633	HHH	15.18
PF10576	EndIII_4Fe-2S	8.93
PF12705	PDDEXK_1	8.04
PF13361	UvrD_C	1.79
PF13551	HTH_29	0.89
PF10604	Polyketide_cyc2	0.89
PF03992	ABM	0.89
PF02219	MTHFR	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	48.21
COG0177	Endonuclease III	Replication, recombination and repair [L]	48.21
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	48.21
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	48.21
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	48.21
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	0.89

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.86%
Host-Associated	Host-Associated	31.25%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.86%
Plants	Host-Associated → Plants	31.25%
Solid Waste	Engineered → Solid Waste	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.71%
Peat	Environmental → Terrestrial → Peat	1.79%
Roots	Host-Associated → Plants → Roots	0.89%
Grass	Engineered → Solid Waste → Grass	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.43%
Loam	Environmental → Terrestrial → Soil → Loam	17.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%
Composting	Engineered → Solid Waste → Grass → Composting	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.25%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.68%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.18%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.79%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005893	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_202	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_01816950	2170459019	Switchgrass, Maize And Mischanthus Litter	LSRDALPLHHRGMTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLTSSGEAAERRLVD
C688J35102_1193543242	3300002568	Soil	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEARVRAELGARDAAVLEALGVLVAVDAAGER
C688J35102_1203361131	3300002568	Soil	MTRIEIELYAERLSRHAERLRDDLDGARMRLAWLDLERSARGELGARDTAVLESLGV
Ga0062590_1017174272	3300004157	Soil	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLT
Ga0062595_1007566052	3300004479	Soil	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAE
Ga0062592_1008175181	3300004480	Soil	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETRAGDQLGPRDCAV
Ga0062594_1003666673	3300005093	Soil	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETRAGDQLGPRDCAVLEALGVLTACDQAAERRLVER
Ga0066810_100465282	3300005169	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWAGIEAVARAEL
Ga0070690_1009682612	3300005330	Switchgrass Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEARARAELGARDAAVLEALGALVAVDAAGERRLLE
Ga0070682_1014579372	3300005337	Corn Rhizosphere	MPRIELELYADRLGRHAERLRDDIEGARMRLSWAELETRARDQLGQRDCAVLEALGVLTACDQ
Ga0070687_1001598191	3300005343	Switchgrass Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWARLERRAREELGQRDSAVLEALGVLG
Ga0070687_1006337451	3300005343	Switchgrass Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLERRAREELGQRDSAVLEALG
Ga0070674_1015013621	3300005356	Miscanthus Rhizosphere	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGARDVAVLEALGALVQPDA
Ga0070667_1006453882	3300005367	Switchgrass Rhizosphere	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGARDVAVLEALGALVQPDAATE
Ga0070713_1001742581	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MARIELELYADRLSRHAERLRDDVDGARMRLVWARFEAGARDRLAARDLQLLEAIGVWA
Ga0070705_1005931811	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LRPGRHAGRMARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELG
Ga0070705_1016265761	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEARVRAELGARDAAVLEALGVLVAVDA
Ga0070694_1005502112	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAELGARDAAVL
Ga0070672_1001458413	3300005543	Miscanthus Rhizosphere	LSRDALPLHHRGMTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESSAREQLGVRDCAVLEALGVL
Ga0070704_1003559323	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLERRAREELGQRDSAVLEALGVLGA
Ga0070704_1021584181	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIELELYADRLGRHAERLRDDIEGARMRLSWAELETRARDQLGQRDCAVLEALGVLTACD
Ga0068852_1006028211	3300005616	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEG
Ga0068863_1016735532	3300005841	Switchgrass Rhizosphere	MTRIEIELYADRLSRHAERLRDDVEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLTS
Ga0075289_10769511	3300005888	Rice Paddy Soil	MARIELELYADRLARHAERLRDDVDGARLRIAWGGIEAVARAELGARDVAVLEA
Ga0075278_10066473	3300005893	Rice Paddy Soil	MARIELELYADRLARHAERLRDDVDGARLRIAWGGIEAVARAELGARDVAVLE
Ga0066651_108166502	3300006031	Soil	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAELGAHDAAVLEALGVLVAVDAAGERRLLERRL
Ga0066696_109063502	3300006032	Soil	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAELGAHDAAVLEALGVLV
Ga0070716_1007402601	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAEL
Ga0070712_1018511191	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MARIELELYADRLSRHAERLRDDVDGARMRLVWARFEAGARDRLAAR
Ga0068871_1006681532	3300006358	Miscanthus Rhizosphere	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLTSSDE
Ga0074056_117970301	3300006574	Soil	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRL
Ga0074062_128546741	3300006606	Soil	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLR
Ga0079222_113404192	3300006755	Agricultural Soil	MPRIELELYADRLARQAERLRDDVDGARLRLVWEE
Ga0075421_1027877251	3300006845	Populus Rhizosphere	MPRLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGARDVAVLEALGALVQPDAPTERRLLERRI
Ga0075434_1016484552	3300006871	Populus Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEE
Ga0075424_1021877882	3300006904	Populus Rhizosphere	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETRARDQLGPRDCAVLEALGVLTACD
Ga0074063_100478583	3300006953	Soil	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQL
Ga0079219_106970971	3300006954	Agricultural Soil	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGARDVAVLEALGALVQPDAATERRL
Ga0066710_1046150622	3300009012	Grasslands Soil	MARLELELYADRLSRRAERLRDDIDGARLRIAWAGTEAVARAELGSRDVAVLEALGALVQADAAAERAVHVNPTGLV
Ga0105245_116736901	3300009098	Miscanthus Rhizosphere	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARA
Ga0105245_119573982	3300009098	Miscanthus Rhizosphere	MPRLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARA
Ga0114129_118103292	3300009147	Populus Rhizosphere	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETRAGDQLGPRDCAVLEALG
Ga0105242_103080191	3300009176	Miscanthus Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLEQRARDELG
Ga0105248_117404121	3300009177	Switchgrass Rhizosphere	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETRAGD
Ga0105248_130022552	3300009177	Switchgrass Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAELGTRDAAVLEAL
Ga0105237_106829253	3300009545	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELESRVRAELGARDAA
Ga0126311_113917012	3300010045	Serpentine Soil	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETRARDQLGP
Ga0134065_102580061	3300010326	Grasslands Soil	MTRIEIELYAERLSRHAERLRDDLDGARMRLAWLDLERSARDELGAR
Ga0134125_105916771	3300010371	Terrestrial Soil	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRSEL
Ga0134126_122668442	3300010396	Terrestrial Soil	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGARDVAVLEALGALVQPD
Ga0134127_118969011	3300010399	Terrestrial Soil	LSRDALPLHHRGMTRIEIELYADRLSRHAERLRNDLEGARMRLGWLRLESRAREQLGVRDCAVLE
Ga0126348_10180371	3300010862	Boreal Forest Soil	MGRIELELYADRLSRSAERLRDDLDGARTRIAWARFERDARGRLGARDAAVLD
Ga0151490_16021581	3300011107	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWAGIEAVARAELGTRDVAVLEALGALVQADAAAER
Ga0120139_10468893	3300012019	Permafrost	MSRIELELYADRLARHAERLRDDVDGARLRLAWAGLEQRVRYR
Ga0157286_101909122	3300012908	Soil	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETR
Ga0164303_106821752	3300012957	Soil	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRS
Ga0164299_116642842	3300012958	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWAG
Ga0164309_109464711	3300012984	Soil	MGRIELELYADRLARHAERLRDDVEGGRMRIEWASL
Ga0164308_102261673	3300012985	Soil	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLEARA
Ga0164304_109957752	3300012986	Soil	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLEQRARDELGQRDSAVLEALGVLGADDEQAERRLIDR
Ga0164304_113593942	3300012986	Soil	MARIELELYADRLSRHAERLRDDVDGARMRLVWARFEAGARDRLAARDLQLLEAIGVWAG
Ga0164304_118404222	3300012986	Soil	MTRIGIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQ
Ga0164307_106985572	3300012987	Soil	MARIELELYADRLSRHAERLRDDVDGARMSLVWAR
Ga0164306_116210192	3300012988	Soil	MGRIELELYADRLARHAERLRDDVEGSRMRIEWCGLEERARRE
Ga0120158_105038972	3300013772	Permafrost	MSRIELELYADRLARHAERLRDDVDGARLRLAWAGLEQRVRPDL
Ga0157380_103953271	3300014326	Switchgrass Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLEQRARDELGQRDSAVLEALGVLGADDEQAERR
Ga0157377_104678371	3300014745	Miscanthus Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAELGTRDAAVLEALGVLVAVDAAGER
Ga0182005_10989762	3300015265	Rhizosphere	MSRIELELYADRLARHAERLRDDIDGARLRIAWGGIEAVARAELGARDVAVL
Ga0193728_10432151	3300019890	Soil	MSRIELELYADRLARHAERLRDDVDGARLRLAWAGLEQRVRTDLGAHDAAVLEALGVLVAVDDAGERRLL
Ga0206354_111257432	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLTSSDEAAERRLVDRRLR
Ga0247790_101571102	3300022915	Soil	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAELETRAGDQLGPRDCAVLE
Ga0207642_101588623	3300025899	Miscanthus Rhizosphere	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGSRDVAVLEALGALVQPDAATERRLLERRIRQL
Ga0207645_101059161	3300025907	Miscanthus Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLEQRA
Ga0207654_103981072	3300025911	Corn Rhizosphere	LSRDALPVHHRGMTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLTSSDE
Ga0207660_103867003	3300025917	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAELGARDGAVLEALGV
Ga0207662_101665133	3300025918	Switchgrass Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLERRARE
Ga0207649_110429621	3300025920	Corn Rhizosphere	MTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAR
Ga0207652_104114071	3300025921	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVR
Ga0207687_103334511	3300025927	Miscanthus Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAEL
Ga0207700_100763273	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MARIELELYADRLSRHAERLRDDVDGARMRLVWARFEAGARDRLAARDLQL
Ga0207700_108982472	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VSRIELELYADRVARHAERLRDDVDGARLRLAWAGIEGRVRTELGA
Ga0207686_117170842	3300025934	Miscanthus Rhizosphere	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAE
Ga0207709_109068811	3300025935	Miscanthus Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLEQRARDELGQRDSAVLEALGVLGADDEQ
Ga0207704_106531032	3300025938	Miscanthus Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWSRLERRAREELGQRDSAVLEALGVLGADDEQ
Ga0207661_116856042	3300025944	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRV
Ga0207667_112957261	3300025949	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELESRVRAELGARDAAVLEALGVLVAVDAAGERRL
Ga0207703_104355303	3300026035	Switchgrass Rhizosphere	LSRDALPVHHRGMTRIEIELYADRLSRHAERLRDDLEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLTSSDEAAER
Ga0207639_120431342	3300026041	Corn Rhizosphere	MGRIELELYADRLARHAERLRDDVEGGRMRIEWAQLERRAR
Ga0207702_111611361	3300026078	Corn Rhizosphere	MSRIELELYADRLARHAERLRDDIDGARLRIAWGGIEAVARAELGARDV
Ga0207676_118872321	3300026095	Switchgrass Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEGRVRAELGARDAAVLEALG
Ga0207683_116606431	3300026121	Miscanthus Rhizosphere	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGARDVA
Ga0207698_106723451	3300026142	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELEARARAELG
Ga0207698_120137202	3300026142	Corn Rhizosphere	MPRIELELYADRLARHAERLRDDVDGARLRLVWEELESRVRAELGARDAAVLEALGVLVAVDAA
Ga0247828_100096963	3300028587	Soil	MGRIELELYADRLARHAERLRDDVEGGRMRIEWARTAFK
Ga0247818_113846691	3300028589	Soil	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAELGVP
Ga0307320_103514081	3300028771	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWGGIEAVARAELGT
Ga0307288_103488161	3300028778	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWGGIEAVARA
Ga0307282_102676162	3300028784	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWAGIEAVARAELGTRDVAVLEAL
Ga0307503_107132111	3300028802	Soil	MTRIEIELYADRLSRHAERLRDDLDGARMRLAWVQL
Ga0247825_100325741	3300028812	Soil	MGRIELELYADRLARHAERLRDDVEGGRMRIEWARLERRAREELGQRDSAVLEALGVLA
Ga0307286_101946532	3300028876	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWGGIEAVVR
Ga0307300_103523142	3300028880	Soil	MTRIELELYADRLGRHAERLRDDVEGARMRLSWAEL
Ga0247827_103212442	3300028889	Soil	MARLELELYADRLARHAERLRDDIDGARLRIAWSGIEAVARAVLGARDV
Ga0318554_103245261	3300031765	Soil	MTRIEIELYAERLSRHAERLRDDLEGARMRISWLQLEAAA
Ga0318521_106958172	3300031770	Soil	MTRIEIELYAERLSRHAERLCDDLEGARMRISWLQLE
Ga0318548_102702052	3300031793	Soil	MTRIEIELYAERLSRHAERLRDDLEGARMRISWLQLEAAARERLGTRDCAVLEALGVLS
Ga0318564_102671141	3300031831	Soil	MTRIEIELYAERLSRHAERLRDDLEGARMRISWLQLEAAARERLGTRDCAVLEALGVLSGGDESAE
Ga0308175_1028631192	3300031938	Soil	MSRIELELYADRLARHAERLRDDIDGARLRIAWGGIEAVARAELGARDVAVLEALGALVQPDAAA
Ga0310890_116820892	3300032075	Soil	MTRIEIELYADRLSRHAERLRNDLEGARMRLGWLRLESRAREQLGVRDCAVLEALGVLTSSDEAAERRLVDRRL
Ga0326726_102230103	3300033433	Peat Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWAGIEAVARAELGTRDVAVLEAIGALVQADAA
Ga0326726_102811161	3300033433	Peat Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWAGIEAVAR
Ga0247830_109499831	3300033551	Soil	MARLELELYADRLSRHAERLRDDIDGARLRIAWAGFEAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084621

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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