Metagenome / Metatranscriptome Family F084619

Overview

Basic Information

• Family ID: F084619
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 112
• Average Sequence Length: 56 residues
• Representative Sequence: FYADVFNGSSWSGWTAVGGTGVGSPSCAPLGTGKVVCVIMGINNKLTSVVGP
• Number of Associated Samples: 90
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.89 %
• % of genes from short scaffolds (< 2000 bps): 0.89 %
• Associated GOLD sequencing projects: 83
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (99.107 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil (15.179 % of family members)
• Environment Ontology (ENVO): Unclassified (42.857 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (66.071 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 33.75%
  Coil/Unstructured: 66.25%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF14534	DUF4440	7.14
PF00106	adh_short	7.14
PF01904	DUF72	6.25
PF13620	CarboxypepD_reg	3.57
PF00441	Acyl-CoA_dh_1	1.79
PF02687	FtsX	1.79
PF00144	Beta-lactamase	1.79
PF08327	AHSA1	1.79
PF13545	HTH_Crp_2	1.79
PF00561	Abhydrolase_1	0.89
PF00216	Bac_DNA_binding	0.89
PF07244	POTRA	0.89
PF00069	Pkinase	0.89
PF01872	RibD_C	0.89
PF13520	AA_permease_2	0.89
PF08541	ACP_syn_III_C	0.89
PF07676	PD40	0.89
PF16640	Big_3_5	0.89
PF07969	Amidohydro_3	0.89
PF00005	ABC_tran	0.89
PF12706	Lactamase_B_2	0.89
PF04223	CitF	0.89
PF04966	OprB	0.89
PF00963	Cohesin	0.89
PF12680	SnoaL_2	0.89
PF00719	Pyrophosphatase	0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	6.25
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.57
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.79
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.79
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.79
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.79
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.89
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.89
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.89
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.89
COG3051	Citrate lyase, alpha subunit	Energy production and conversion [C]	0.89
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
All Organisms	root	All Organisms	0.89 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
cellular organisms	root	All Organisms → cellular organisms	0.89 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.89 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.89 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.89 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.89 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.89 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.11 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.89 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300010376|Ga0126381_103716386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	597

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.43%
Host-Associated	Host-Associated	3.57%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.46%
Aquatic	Environmental → Aquatic	16.96%
Plants	Host-Associated → Plants	3.57%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.79%
Sediment	Environmental → Aquatic → Sediment	8.04%
Freshwater	Environmental → Aquatic → Freshwater	7.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.57%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.79%
Peat	Environmental → Terrestrial → Peat	1.79%
Cave	Environmental → Terrestrial → Cave	0.89%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.86%
Loam	Environmental → Terrestrial → Soil → Loam	30.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.18%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	15.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.46%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.68%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.79%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.79%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001145	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2	Environmental
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental
3300001648	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010379	Sb_50d combined assembly	Environmental
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental
3300022557	Paint Pots_combined assembly	Environmental
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022734	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3	Host-Associated
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated
3300030838	I_Fen_N1 coassembly	Environmental
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12682J13319_10086002	3300001145	Forest Soil	LVKLEPLGGTVNENAGCTTPSTGELACGAIGVMDSAFYTNVYNGSSWAGWEKVGGAAVGSPSCAPLGAGKVVCLIMGPTNTLTSSVGP*
JGI12635J15846_108134662	3300001593	Forest Soil	RRSGFGTPGCAPLGTGQVVCVVMGINNKLTSVVGS*
JGI20242J16303_1046261	3300001648	Forest Soil	NVYNGSFWTGWEKVGGKGVGSPSCAPLGTGKVVCLIMGPTNTLTSTVGP*
JGIcombinedJ26739_1001688384	3300002245	Forest Soil	AKIGGTGVGSPSCAPLGTGQVVCVVLGIDNKLTSVIGP*
JGIcombinedJ26739_1015573372	3300002245	Forest Soil	SIGGAVNANAGCATQAANELVCGIYGVGADTDAFYADVYNGAAWSGFTSVGGTGMGTPSCAPLGTGQVACVIMGPDNKLTSTVGP*
JGIcombinedJ51221_100082145	3300003505	Forest Soil	GGTVNDNASCTSQSTGELVCGVIAVTDAAFYANVYNGSFWTGWEKVGGKGVGSPSCAPLGTGKVVCLIMGPTNTLTSTVGP*
JGIcombinedJ51221_103163672	3300003505	Forest Soil	VYNGSFWTGWEKVGGKGVGSPSCAPLGTGKVACLIMGPTNTLTSTVGP*
Ga0062386_1007099232	3300004152	Bog Forest Soil	VISPFTNNAFFANVWTPSTYWSGWTEIGGTGVGSPSCAPLGTGQVVCVILGPNNELTSV
Ga0066395_105815841	3300004633	Tropical Forest Soil	TTQSAGLLVCGVLSVTDNAFYTDVWNGVSWSGWAKIGSSGMGSPACAPLGTGQVVCVIVGLKNQVTSAVGP*
Ga0070711_1000031121	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	IAVTDASLYDTVYNGTAWTLWAKIGGTGVGSPSCAPLGTGQVVCVMMGPSNKLTSVVGP*
Ga0070734_104444352	3300005533	Surface Soil	YDGSTWGGWQKIGGTGNGSPACAALTSGKVVCVIMGINNKLTSVVGP*
Ga0070697_1017437092	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	IVIDNAFYADVYNGSAWSGFAKIGGTGVGSPSCAPLGTGQVVCVVLGIDNKLTSVVGP*
Ga0070733_100980921	3300005541	Surface Soil	GWEGWIKIGGTGIDIPACGALGTRKVVCIVMGVNNKLTSVVGP*
Ga0066691_108962652	3300005586	Soil	QAAGQLVCGVTGIDNVFYADVYNGSGWSGYAKIGGTGVGSPSCASLGTGQVVCVVRGINNKLTSVVGP*
Ga0070761_101313261	3300005591	Soil	WSGWTEIGGLGVGTPACTALATGQAVCIVVGVDNKLTSVVGP*
Ga0070762_105088102	3300005602	Soil	GWSKIGGSGTGSPACTPLGTGKVVCVMKALNNLITSVVGP*
Ga0070763_108796271	3300005610	Soil	CGAIGIGTYGNAFYADVYNGSGWSGWTEIGGLGVGTPACTALATGQAVCIVVGVDNKLTSVVGP*
Ga0070764_102536602	3300005712	Soil	VYNGSSWSGWTAVGGTGVGSPSCAPMGTGKAVCVIMGINNKLTSVVGP*
Ga0066903_1070051552	3300005764	Tropical Forest Soil	DNAFYADVWNGLSWSGWVKIGGSGMGSPACAPLGTGQVVCVIVGLKNQLTSAVGP*
Ga0070766_100931034	3300005921	Soil	TGWEKVGGKGVGSPSCAPLGTGKVVCLIMGPTNTLTSTVGP*
Ga0070766_103133633	3300005921	Soil	QSTGELVCGVIAVTDAAFYANVYNGSFWTGWEKVGGKGVGSPSCAPLGTGKVVCLIMGPTNTLTSTVGP*
Ga0070717_112394062	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GAVTENASCTTQSAGLLVCGVLSVTDNAFYTDVWNGVSWSGWVKIGGSGMGSPACAPLGTGQVVCVIVGLKNQVTSAVGP*
Ga0075028_1000043753	3300006050	Watersheds	VIAIDNVFYADVYTGSWTGWTKIGGTGVGTPACAPLGTGKVVCTVVGVNNALTSVVGP*
Ga0075029_1003825092	3300006052	Watersheds	WSGWNPIGGSGVGSPSCAPLGTGQAVCVVMGMDNKLTSVVGP*
Ga0075029_1007845902	3300006052	Watersheds	APGMLVCGVIGETDNAFYADVYNGSGWGVWAKIGGTGIGIPACAPLGTGQVVCVVMGVNNKVTSVVGP*
Ga0075029_1009228092	3300006052	Watersheds	IDNAFYSDVYNGSSWAGWAKVGGSGVNIPACAPLTTGQVVCVVMGPDNKLTSVVGP*
Ga0075019_102265371	3300006086	Watersheds	LVCGVIAIDNAFYADVYNGTSWSTWTKIGGTGVGIPACAPLGTGQAVCVLMGVDNKLTSVVGP*
Ga0075030_1000753304	3300006162	Watersheds	VYNGSNWGVWTKIGGTGIGIPACAPLGTGQVVCVVMGVNNKVTSVVGP*
Ga0070716_1007587201	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VTDAAFYGNVYNGTSWSGWLRVGGAGVGTPSCAPMGTGRVVCLVMSATNKLSSVVGP*
Ga0070765_1000752144	3300006176	Soil	AVNDNASCTSQSTGELVCGVIAVTDAAFYANVYNGSFWTGWEKVGGKGVGSPSCAPLGTGKVACLIMGPTNTLTSTVGP*
Ga0070765_1001159551	3300006176	Soil	GSFWTGWEKVGGKGVGSPSCAPLGTGKVVCLIMGPTNTLTSTVGP*
Ga0070765_1005906361	3300006176	Soil	QAPGELVCGVIAVTDAAFYADVFNGAAWSGYAKIGGAGIGSPSCAPLGTGQVVCVILGPNNKLTSVVGP*
Ga0070765_1017214451	3300006176	Soil	IDNAFYADVYNGTSWSTWTKIGGTGVGIPACSPLGTGQAVCVLMGVDNKLTSVVGP*
Ga0075021_110405711	3300006354	Watersheds	TYNGTSWGGWIKVGGTAVGIPSCARLTTGKAVCVIMQSNNQLTSVVGP*
Ga0075521_101301811	3300006642	Arctic Peat Soil	VYTGSWTGWAKIGGTGVGTPPACAPLGTGQAVCIIVGVDNKLTSIVGP*
Ga0073928_110253172	3300006893	Iron-Sulfur Acid Spring	IWSGWIKIGGTGLGTPSCAPLGTGQVVCVVMGIGNKLTSVVGP*
Ga0099827_106623641	3300009090	Vadose Zone Soil	MGDNAFYANVYNGTSWSGWAKIGGTGLGTPSCAALGAGQIVCTVRGVNNKLISVVGP*
Ga0116217_101476361	3300009700	Peatlands Soil	DGSSWSGWTKVGGARIGTPACSPLGTGTGQVVCVVMGINNKLTSVVGP*
Ga0116101_10231891	3300009759	Peatland	IGGTGVGTPSCSALGTGQVVCVIMGVNNKLTSVVGL*
Ga0126373_101862314	3300010048	Tropical Forest Soil	ELVCRVIGVLDSAFYADVYNGTVWVGWAKVGGTGIGSPSCAPLGTAQVVCVIMGSKNQLTSVVGP*
Ga0126373_104582142	3300010048	Tropical Forest Soil	FYANLYTGTWSNWIRVGGTGFSSPACAPLGTGKVVCVLKGINNRLTSVVGP*
Ga0126373_131443571	3300010048	Tropical Forest Soil	AFDNAFYANVFTGAVWSGWIKIGGTGYGSPACAPLGTGKVVCVVMGINNKLTSVTGP*
Ga0074046_106670452	3300010339	Bog Forest Soil	SAWSGWTSIGSTGVGTPACAPLGTGQVVCVIMGINNKLTSVVGP*
Ga0074044_10000004140	3300010343	Bog Forest Soil	VISPFTNNAFFANVWTPSTYWSGWTEIGGTGVGSPSCAPLGTGQVVCVILGPNNELTSVVGP*
Ga0126381_1000385987	3300010376	Tropical Forest Soil	VIGVLDSAFYADVYNGTVWVGWAKVGGTGIGSPSCAPLGTAQVVCVIMGSKNQLTSVVGP
Ga0126381_1028631001	3300010376	Tropical Forest Soil	AFDNAFYANVFTGAVWSTWIKIGGTGYGSPACAPLGTGKVVCVVMGINNKLTSVTGP*
Ga0126381_1029506301	3300010376	Tropical Forest Soil	NASRTAQSTGLLVCGVLSVNDNAFYADVWSGVSWSGWVKLGSSGMGSPACAPLGTGQVVCLIPGLRNQLTSAVGP*
Ga0126381_1037163861	3300010376	Tropical Forest Soil	QNPGQLVCGATATAFDNAFYANVFTGVGWSGWIKVGGTGYGSPACAPLGTGKVVCVVMGINNKLTSVVGP*
Ga0136449_1039885642	3300010379	Peatlands Soil	VFDGSSWSGWTKVGGAGIGTPACSPLGTGTGQVVCVVMGINNKLTSVVGP*
Ga0137416_105369732	3300012927	Vadose Zone Soil	KIGGTGVGSPSCAPLGTGQVVCVVRGINNKLTSVVGP*
Ga0164309_105858851	3300012984	Soil	DNAGCTTQAPGLLVCGATAVTDNAFYADVWNGLSWSGWSKVGGSGTGSPACAPLGTGQVVCVMMGLNNRLTSVVGP*
Ga0181526_106569841	3300014200	Bog	WLGFTEIGGLGVGSPACTALGTGQVVCTVMGVDNKLTSVVGP*
Ga0182015_105290852	3300014495	Palsa	GSGWSDWTAVGGRGDASPSCAPVGPGRVVCVTMGINNKLTSVVGP*
Ga0182039_108393781	3300016422	Soil	TEVGIGSPSCAPLGTGQVICLVVGANNKLSSTIGL
Ga0187847_104560411	3300017948	Peatland	ADVYNGSSWSNWTLIGGTGIGTPACTALGTGQAVCVIMGINNKLTSIVGP
Ga0187872_102738901	3300018017	Peatland	WLGFTEIGGLGVGSPACTALGTGQVVCTVMGVDNKLTSVVGP
Ga0187874_101469282	3300018019	Peatland	YGVGPDNSEFYANVYSGSGWSGWSQIGGTGIGTPSCAALDTGQVVCVVMGINNKLTSVVG
Ga0187885_104342511	3300018025	Peatland	SSWSGWTKVGGAGIGTPACSPLGTGTGQVVCVVMGVNNKLTSVVGP
Ga0210403_108983561	3300020580	Soil	LLVCGAIGELDGAFYADVYNGSSWAGWVKVGGTGIGIPACGALGTGKVVCIAMGVNNRLTSVVGP
Ga0210404_107947922	3300021088	Soil	AFYADVYNGSSYSAWIKIGGTGVGSPSCAPLGTGQVVCVVMGPNNKLSCVVGP
Ga0210404_108139662	3300021088	Soil	AFYADVFNGSSWSGWTLIGGGGTGLGSPSCAPLGSGKVVCVIMGLNNKLTSVVGP
Ga0210400_114237822	3300021170	Soil	GGTGVGSPSCAPLGTGQVVCVVLGIDNKLTSVVGP
Ga0210388_101436391	3300021181	Soil	YGVGLYNSVFYADVYNGSSWSGWTAVGGTGVGSPSCAPMGTGKAVCVIMGINNKLTSVVG
Ga0210393_105515762	3300021401	Soil	VIGELDNAFYADVYNGSNWGGWVKIGGTGIGIPACGALGTGQVVCVAMGANNKLTSVVGP
Ga0210387_110013121	3300021405	Soil	DNASCTSQVTGEVVCGVIAVTDAAFYGNVYNGISWSGWVKVGGSGVGTPSCAPLGTGRVVCLVISATNKLSSVVGP
Ga0210387_117600021	3300021405	Soil	LAGTVNDNASCTSQAAGELVCGVIAVTDAAFYSNVFSGTSWTGWAKVGGSGVGSPACAPLGSGKVVCLVMGPTNKLTSVVGP
Ga0210394_104498342	3300021420	Soil	NWGGWVKIGGTGIGIPACGALGTGQVVCVAMGANNKLTSVVGP
Ga0210394_115603641	3300021420	Soil	AANELVCGVYGVGADADAFYADVYNGAAWSGFASVGGTGMGTPSCAPLGTGQVACVVMGPDNKLTSTVGP
Ga0210384_104703942	3300021432	Soil	DVVDNAFYADVWTGTSWTGFLKVGGSGTGSPACAPLGTGQVVCLVMGLNNQLSSVVGP
Ga0210392_100539592	3300021475	Soil	TQTAGQLVCGVIAIDNAFYADVYNGTSWSTWTKIGGTGVGIPACAPLGSGQAVCVVMGINNKLTSVVGP
Ga0187846_104880541	3300021476	Biofilm	CTSQAAGLLVCGVISTLDSAFYANVYNGSAWSGWAKIGGTGVGSPSCAALGTGQVVCTVMGVDNKLTSVVGP
Ga0210410_109403272	3300021479	Soil	IDNAFYADVYNGTNWSTWTKIGGTGVGIPACAALGSGQAVCVVMGINNKLISVVGP
Ga0210409_101219071	3300021559	Soil	CGVIGELDNAFYADVYNGSNWGGWVKIGGTGIGIPACGALGTGQVVCVAMGANNKLTSVVGP
Ga0212123_104833472	3300022557	Iron-Sulfur Acid Spring	ESAAVRARWTKIGGTGVGTPSCAPLGTGQAVCVVMGVNNKLTSVVGP
Ga0242666_10525232	3300022721	Soil	YNGSGWSGWTEIGGLGVGTPACTALATGQAVCIVVGVDNKLTSVVGP
Ga0224571_1108732	3300022734	Rhizosphere	FYANVFNGSSWSSWALIGGTGVGTPACAGLGTGQAVCVVMGINNKLTSVVGP
Ga0224564_10447082	3300024271	Soil	DNAFYADVYNGSNWGGWVKIGGTGIGIPACGALGTGQVVCVAMGANNKLTSVVGP
Ga0207665_114908771	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ELVCGVIAVTDAAFYGNVYNGTSWSGWLKVGGSGVGTPSCAPLGTGRVVCLVMSATNKLSSVVGP
Ga0209528_10644702	3300027610	Forest Soil	PGELVCGVIAVTDAAFYADVFNGAAWSGYAKIGGAGIGSPSCAPLGTGQVVCVILGPNNKLTSVVGP
Ga0208990_10741812	3300027663	Forest Soil	NGSGWTGFAKIGGTGVGSPSCAPLGTGQVVCVVLGIDNKLTSVVGP
Ga0208696_10961611	3300027696	Peatlands Soil	LVGGAGIGTPACSPLGTGTGQVVCVVMGINNKLTSVVGP
Ga0209655_100075296	3300027767	Bog Forest Soil	SSWALIGGTGVGTPACAGLGTGQAVCVVMGINNKLTSVVGP
Ga0209693_102702371	3300027855	Soil	LVCGAIGIGTYGNAFYADVYNGSGWSGWTEIGGLGVGTPACTALATGQAVCIVVGVDNKLTSVVGP
Ga0209275_104031051	3300027884	Soil	WSGWSKIGGSGTGSPACTPLGTGKVVCVMKALNNLITSVVGP
Ga0209275_107584852	3300027884	Soil	GAIGAQDNAFYANVDTGIWSGWIKIGGTGLGTPSCAPLGTGQVVCVVMGIGNKLTSVVGP
Ga0209275_108757522	3300027884	Soil	FYADVFNGSSWSGWTAVGGTGVGSPSCAPLGTGKVVCVIMGINNKLTSVVGP
Ga0209380_105764361	3300027889	Soil	GCTSHTAGLLVCGATAVTDNAFYANVWGGSSWSGWSKIGGSGTGSPACTPLGTGKVVCVMKALNNLITSVVGP
Ga0209068_101355952	3300027894	Watersheds	VIAIDNVFYADVYTGSWTGWTKIGGTGVGTPACAPLGTGKVVCTVVGVNNALTSVVGP
Ga0209067_107595531	3300027898	Watersheds	VGDAAFFADVFTGTAWTGWVQIDGTGVGVGTPACSPLGTGQAVCVVMGVNNKLSSVVGP
Ga0209415_102142201	3300027905	Peatlands Soil	PDLLVCGALDPTDNALGSDVYNGSNWSGWSKVGGLGINSPACAPLGTGQVVCVVLGINNKLTSVVGP
Ga0209526_107961862	3300028047	Forest Soil	FAKIGGTGVGSPSCAPLGTGQVVCVVLGINNKLTSVVGP
Ga0308309_100438235	3300028906	Soil	QAPGELVCGVIAVTDAAFYADVFNGAAWSGYAKIGGAGIGSPSCAPLGTGQVVCVILGPNNKLTSVVGP
Ga0308309_118154721	3300028906	Soil	NGSSWVVGDWSGYEGLGGTVNDNASCTSQSTGELVCGVIAVTDAAFYANVYNGSFWTGWEKVGGKGVGSPSCAPLGTGKVVCLIMGPTNTLTSTVGP
Ga0265324_100181361	3300029957	Rhizosphere	NLICGVLSVNDSAFYANIYNGSGWLGWNKIGGSGIGIPSCAALGTGQVVCTVMGANNKLSSVVGP
Ga0311335_110433321	3300030838	Fen	KIGSVRVGSPSCAALGTGQVACLVNGINNTFTSFVGP
Ga0265753_10085902	3300030862	Soil	WSTWALVGGGGTGFGSPSCAPLGSGKVVCVSMGLNNKLTSVVGP
Ga0265339_104637612	3300031249	Rhizosphere	IGGTGVGTPACSPLGTGQAVCVVMGVNNKLSSVVGP
Ga0265316_112678201	3300031344	Rhizosphere	ATDNAFYSNLYNGSSWAGWTKVGGTGVNTPSCALVTAGEVVCVVLGPDNKLTSVVGP
Ga0170818_1062178211	3300031474	Forest Soil	GWSKIGGSATGSPACAPLGTGKVVCVMKTLTNLITSVVGP
Ga0310686_1043212351	3300031708	Soil	GVIGALDSALYANVYNGALWSGWGKVGGTGVGSPACTPLGTGQVVCLVMGPSNKLSSTVG
Ga0307476_102578711	3300031715	Hardwood Forest Soil	IWGGSSWSGWSKIGGSGTGSPACAPLGTGKVVCVMKTLNNLITSVVGP
Ga0307476_102868532	3300031715	Hardwood Forest Soil	AIGAQDNAFYANVDNGIWSGWTKIGGTGLGTPSCAPLGTGQVVCVVMGVNNKLTSVVGP
Ga0307476_103140221	3300031715	Hardwood Forest Soil	WTEVGGAGIGTPACSPLGTGTGQVVCVVMGINNKLTSVVGP
Ga0306919_105161452	3300031879	Soil	YANMFTGMGWSGWVKVGGTGYGSPACAPLGTGKVVCVVMGINNKLTSVVGP
Ga0306921_121260981	3300031912	Soil	IDNIFYANVYSGSWSGWVKVGGTGVGSSACAPLGTGKVVCVVMGINNKLTSVIGP
Ga0310912_103881901	3300031941	Soil	GWSGWVKVGGTGYGSPACAPLGTGKVVCVVMGINNKLTSVVGP
Ga0307479_102538091	3300031962	Hardwood Forest Soil	CGVIAVTDAAFYANVYNGSFWTGWEKVGGKGVGSPSCAPLGTGKVVCLIMGPTNTLTSTVGP
Ga0306920_1001546031	3300032261	Soil	EGGTTEVGIGSPSCAPLGTGQVICLVLGTTNKLSSIIGP
Ga0306920_1014425671	3300032261	Soil	VRDNTFYADVYSGTSWLGWVKIGGSGTGSPACAPLGTGKVVCLIMGLKNQLTSAVGP
Ga0335071_102275621	3300032897	Soil	CGAMSTDSSFYADIYNGASWSGWAKIGGSGYRSPACAPLGGGKVVCVVLGINNKLTSVTG
Ga0310914_100945481	3300033289	Soil	VCGVTAIDNIFYANVYSGSWSGWVKVGGTGVGSSACAPLGTGKVVCVVMGINNKLTSVIG
Ga0334792_020156_2259_2390	3300033888	Soil	VWTGWAQIGGTGVGTPACSPLGTGQAVCLVMGVNNKLSSVVGP