Metagenome / Metatranscriptome Family F084565

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084565
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	45 residues
Representative Sequence	RRMALTGVNKRVLKVFEITKVEQIFLMFPTLSDAIEAFTNAGTA
Number of Associated Samples	102
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.11 %
% of genes from short scaffolds (< 2000 bps)	90.18 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.750 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (23.214 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.893 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF08002	DUF1697	16.07
PF01750	HycI	8.04
PF12900	Pyridox_ox_2	5.36
PF00374	NiFeSe_Hases	2.68
PF05721	PhyH	1.79
PF12704	MacB_PCD	0.89
PF00749	tRNA-synt_1c	0.89
PF11645	PDDEXK_5	0.89
PF08974	DUF1877	0.89
PF00082	Peptidase_S8	0.89
PF00107	ADH_zinc_N	0.89
PF01058	Oxidored_q6	0.89
PF13188	PAS_8	0.89
PF00460	Flg_bb_rod	0.89
PF13561	adh_short_C2	0.89
PF03950	tRNA-synt_1c_C	0.89
PF00202	Aminotran_3	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	16.07
COG0680	Ni,Fe-hydrogenase maturation factor	Energy production and conversion [C]	8.04
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	2.68
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	2.68
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.79
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.79
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	0.89
COG1256	Flagellar hook-associated protein FlgK	Cell motility [N]	0.89
COG1558	Flagellar basal body rod protein FlgC	Cell motility [N]	0.89
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	0.89
COG1749	Flagellar hook protein FlgE	Cell motility [N]	0.89
COG1815	Flagellar basal body rod protein FlgB	Cell motility [N]	0.89
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	0.89
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	0.89
COG4786	Flagellar basal body rod protein FlgG	Cell motility [N]	0.89
COG4787	Flagellar basal body rod protein FlgF	Cell motility [N]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.75 %
Unclassified	root	N/A	6.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.75 %
Unclassified	root	N/A	6.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.75 %
Unclassified	root	N/A	6.25 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	69.64 %
Unclassified	root	N/A	6.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	64.29 %
Unclassified	root	N/A	6.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.29 %
Unclassified	root	N/A	6.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.79 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.29 %
Unclassified	root	N/A	6.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.79 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.29 %
Unclassified	root	N/A	6.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.79 %
Candidatus Brocadiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.29 %
Unclassified	root	N/A	6.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.79 %
Candidatus Brocadia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.29 %
Unclassified	root	N/A	6.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.79 %
Candidatus Brocadia sinica	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → Candidatus Brocadia sinica	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12126137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300001356\|JGI12269J14319_10234050	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300001546\|JGI12659J15293_10003660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4620	Open in IMG/M
3300004091\|Ga0062387_100353199	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300004267\|Ga0066396_10084876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300005175\|Ga0066673_10203602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300005186\|Ga0066676_10259675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1137	Open in IMG/M
3300005437\|Ga0070710_10422598	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300005439\|Ga0070711_101144417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300005445\|Ga0070708_101711223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300005447\|Ga0066689_10634594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300005532\|Ga0070739_10130116	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300005542\|Ga0070732_10547838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300005712\|Ga0070764_10019367	All Organisms → cellular organisms → Bacteria	3388	Open in IMG/M
3300005887\|Ga0075292_1031283	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300006086\|Ga0075019_10860571	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300006102\|Ga0075015_100027118	All Organisms → cellular organisms → Bacteria	2584	Open in IMG/M
3300006174\|Ga0075014_100860768	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300006175\|Ga0070712_100674678	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300006176\|Ga0070765_100345361	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300006176\|Ga0070765_100353037	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300006176\|Ga0070765_100598437	Not Available	1039	Open in IMG/M
3300006358\|Ga0068871_102290955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300006806\|Ga0079220_11393021	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300007788\|Ga0099795_10102771	All Organisms → cellular organisms → Bacteria → Acidobacteria	1123	Open in IMG/M
3300009520\|Ga0116214_1105060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300009638\|Ga0116113_1130426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300009638\|Ga0116113_1147570	Not Available	588	Open in IMG/M
3300009698\|Ga0116216_10698095	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009700\|Ga0116217_10717264	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	618	Open in IMG/M
3300009824\|Ga0116219_10562339	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	628	Open in IMG/M
3300010046\|Ga0126384_12232168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300010048\|Ga0126373_10256997	Not Available	1722	Open in IMG/M
3300010376\|Ga0126381_103431252	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300010379\|Ga0136449_102179658	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300011082\|Ga0138526_1124344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300011120\|Ga0150983_11813215	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300011120\|Ga0150983_12228574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300012207\|Ga0137381_10937434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300012971\|Ga0126369_12847481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300013296\|Ga0157374_12295604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300014166\|Ga0134079_10557477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300014167\|Ga0181528_10880511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300014654\|Ga0181525_10103063	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300017936\|Ga0187821_10116206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	994	Open in IMG/M
3300017943\|Ga0187819_10440250	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300017955\|Ga0187817_10278960	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300017973\|Ga0187780_10034820	All Organisms → cellular organisms → Bacteria	3540	Open in IMG/M
3300018023\|Ga0187889_10267973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300018058\|Ga0187766_10278443	Not Available	1078	Open in IMG/M
3300018064\|Ga0187773_10568878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300018085\|Ga0187772_10018618	All Organisms → cellular organisms → Bacteria → Acidobacteria	3949	Open in IMG/M
3300018085\|Ga0187772_10491613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300018482\|Ga0066669_11047983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300020062\|Ga0193724_1064796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300020580\|Ga0210403_10714380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300021181\|Ga0210388_10291798	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300021420\|Ga0210394_11555452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300021433\|Ga0210391_10292541	Not Available	1278	Open in IMG/M
3300021475\|Ga0210392_10902334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300021477\|Ga0210398_10420606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1089	Open in IMG/M
3300021478\|Ga0210402_10795021	All Organisms → cellular organisms → Bacteria → Acidobacteria	871	Open in IMG/M
3300021560\|Ga0126371_10021983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5895	Open in IMG/M
3300022523\|Ga0242663_1055296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300022716\|Ga0242673_1082836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300025914\|Ga0207671_11504375	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300025916\|Ga0207663_10097837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1963	Open in IMG/M
3300025928\|Ga0207700_10296442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1395	Open in IMG/M
3300025939\|Ga0207665_10798437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300026020\|Ga0208531_1020807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300026332\|Ga0209803_1301447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300027000\|Ga0207803_1044180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300027604\|Ga0208324_1188792	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300027812\|Ga0209656_10147573	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300027842\|Ga0209580_10005136	All Organisms → cellular organisms → Bacteria	5575	Open in IMG/M
3300027842\|Ga0209580_10424973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300027867\|Ga0209167_10534906	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300027879\|Ga0209169_10385679	Not Available	737	Open in IMG/M
3300027884\|Ga0209275_10247290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	977	Open in IMG/M
3300027889\|Ga0209380_10118233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1540	Open in IMG/M
3300027911\|Ga0209698_10305724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1258	Open in IMG/M
3300028023\|Ga0265357_1012709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	869	Open in IMG/M
3300028577\|Ga0265318_10363065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300028800\|Ga0265338_10566070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300028879\|Ga0302229_10328643	Not Available	685	Open in IMG/M
3300030054\|Ga0302182_10161748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	966	Open in IMG/M
3300030503\|Ga0311370_11940090	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300031057\|Ga0170834_112892295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300031249\|Ga0265339_10364320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300031525\|Ga0302326_10215654	All Organisms → cellular organisms → Bacteria	3179	Open in IMG/M
3300031712\|Ga0265342_10258793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300031718\|Ga0307474_11516585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300031719\|Ga0306917_11240475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300031747\|Ga0318502_10976658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300031823\|Ga0307478_10002363	All Organisms → cellular organisms → Bacteria	14922	Open in IMG/M
3300031833\|Ga0310917_10684479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300032770\|Ga0335085_11861441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300032770\|Ga0335085_12539490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300032783\|Ga0335079_11390346	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300032805\|Ga0335078_11862831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300032805\|Ga0335078_12412059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300032892\|Ga0335081_12382841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300032896\|Ga0335075_11255677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300032897\|Ga0335071_10046933	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → Candidatus Brocadia sinica	4266	Open in IMG/M
3300032897\|Ga0335071_10817017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300032897\|Ga0335071_11809758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300032898\|Ga0335072_10864198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300032955\|Ga0335076_10100544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2819	Open in IMG/M
3300033134\|Ga0335073_12070962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300033158\|Ga0335077_11731008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300033433\|Ga0326726_11768209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300033887\|Ga0334790_210143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.86%
Host-Associated	Host-Associated	7.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.36%
Aquatic	Environmental → Aquatic	12.50%
Plants	Host-Associated → Plants	7.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.00%
Freshwater	Environmental → Aquatic → Freshwater	8.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.25%
Peat	Environmental → Terrestrial → Peat	5.36%
Sediment	Environmental → Aquatic → Sediment	3.57%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.75%
Loam	Environmental → Terrestrial → Soil → Loam	17.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	18.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.82%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.46%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.46%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.46%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.57%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.68%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.79%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026020	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_121261371	3300000789	Soil	RIALTGVNKRVLKVFEITKVEQILLMFPTLSDAIEAFTNAGTA*
JGI12269J14319_102340501	3300001356	Peatlands Soil	IAITGLNQRVQKVFEITKVENIFLIFPTLSDALEAFTNSGTA*
JGI12659J15293_100036601	3300001546	Forest Soil	TACTSCAKAGRRMALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGSA*
Ga0062387_1003531993	3300004091	Bog Forest Soil	SCTKAGRRIALTGVNKRVRKVFEITRVEQVFLMFPTLSDALEAFTNAGRA*
Ga0066396_100848762	3300004267	Tropical Forest Soil	TGVNKRVLKVFEITKVEQIFLMFPTLSDAIEAFTNTGSA*
Ga0066673_102036021	3300005175	Soil	SACTSAAKAGRRIALAGVNHRVLKVFEITKVEQIFLMFPTLSDAIEGLTNAGSA*
Ga0066676_102596754	3300005186	Soil	ALAGVNHRVLKVFEITKVEQIFLMFPTLSDAIEGLTNAGSA*
Ga0070710_104225981	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AGRRIAITGVNKRVLKVFEITKVEQILLMFPTLSDAIEAFTNAGTA*
Ga0070711_1011444173	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	TGVNKRVLKVFEITKVEQILLMFPTLSDAIEAFTNAGTA*
Ga0070708_1017112232	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA*
Ga0066689_106345941	3300005447	Soil	GRRVALTGVNQRVMKVFEITKVEEIFLMFPTLSDALEAFTNAGTA*
Ga0070739_101301163	3300005532	Surface Soil	AAYVSCQKAGRKVALTGVNDKVLKLFEITRVDSVFLMFPTLWEAIEALTGAAQA*
Ga0070732_105478381	3300005542	Surface Soil	KRVLKVFEITKVEQIFLMFPTLSDAIEAFTNAGSA*
Ga0070764_100193676	3300005712	Soil	SLVSSCISCQKSGRRMALTGVNQRVMKVFQITKTEPLFLMFPTVSDALEAFTNAGTA*
Ga0075292_10312833	3300005887	Rice Paddy Soil	KRVLKVFEITKVEQVFLMFPTLSDAIEAFTNAGSA*
Ga0075019_108605712	3300006086	Watersheds	AYTSCAKSGRRVALTGVNKRVLKVFEITKVERIFLMFPTLSDALEAFTNAGSA*
Ga0075015_1000271181	3300006102	Watersheds	YTSCAKSGRRVALTGVNKRVLKVFEITKVERIFLMFPTLSDALEAFTNAGTA*
Ga0075014_1008607682	3300006174	Watersheds	CTSCAKAGRRMALTGVNKRVQKVFEITKVEQVFLMFPTLSDALEAFTNAGTA*
Ga0070712_1006746783	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	CTSAAKAGRRIALAGVNHRVLKVFEITKVEQIFLMFPTLSDAIEGLTNAGSA*
Ga0070765_1003453613	3300006176	Soil	LTGVNKRVRKVFEITKVERIFLMFPTLSDALEAFTNAGTA*
Ga0070765_1003530372	3300006176	Soil	YVSCQKSGRRMALSGVNPRVWQLFEITKLEPFFLVFPNLMDAIEALTNAGSA*
Ga0070765_1005984371	3300006176	Soil	NQRVMKVFQITKTEPLFLMFPTVSDALEAFTNAGTA*
Ga0068871_1022909552	3300006358	Miscanthus Rhizosphere	ATKAGRRIALTGVNKRVLKVFEITKVEQVFLMFPTLSDAIEAFTNAGSA*
Ga0079220_113930211	3300006806	Agricultural Soil	VSCQKAGRRVALTGVNDRVLKLFEITRVDSVFLMFPTLWEGIEALTGAAQA*
Ga0099795_101027713	3300007788	Vadose Zone Soil	GINQRVLRVFEITKVEPIFLMFPTVSDALEALTNAGTA*
Ga0116214_11050601	3300009520	Peatlands Soil	ACTSCAKSGRRMALTGVNKRVQRVFEITKVEQIFLMFPTLSDALEAFTNAGTA*
Ga0116113_11304261	3300009638	Peatland	AGRRMALTGVNKRVRKVFEITKVEQIFLMFPTLSDALEAFTNAGTA*
Ga0116113_11475702	3300009638	Peatland	GVNPRVLKVFEITKMEPIFLMFPTISDALEAFTNAGTA*
Ga0116216_106980951	3300009698	Peatlands Soil	TSCAKSGRRMALTGVNKRVLKVFEITKVEQIFLMFPTLSDALEAFTNAGTA*
Ga0116217_107172642	3300009700	Peatlands Soil	YTSCAKAGRRIAITGLNQRVQKVFEITKVENIFLIFPTLSDALEAFTNSGTA*
Ga0116219_105623391	3300009824	Peatlands Soil	GRRIAITGLNQRVQKVFEITKVENIFLIFPTLSDALEAFTNSGTA*
Ga0126384_122321681	3300010046	Tropical Forest Soil	RVLKVFEITKVERILLMFPTLSDAIEAFTNAGTA*
Ga0126373_102569972	3300010048	Tropical Forest Soil	RRMALTGVNRRVMKVFEITKTDNVFLMFPTLGDAIEAFTNAGSA*
Ga0126381_1034312521	3300010376	Tropical Forest Soil	SACTSCTKSGRRMALTGANRRVMKVFEITKTDNVFLMFPTLGDAIEAFTNAGSA*
Ga0136449_1021796581	3300010379	Peatlands Soil	TGLNQRVQKVFEITKVENIFLIFPTLSDALEAFTNSGTA*
Ga0138526_11243443	3300011082	Peatlands Soil	CAKSGRRVALTGVNKRVLKVFEITKVERIFLMFPTLSDALEAFTNAGTA*
Ga0150983_118132151	3300011120	Forest Soil	NKRVRKVFEITKVERIFLMFPTLSDALEAFTNAGTA*
Ga0150983_122285743	3300011120	Forest Soil	RVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA*
Ga0137381_109374341	3300012207	Vadose Zone Soil	MALTGVNKRVRKVFEITKMEQIFLIFPTLSDALEAFTNAGTA*
Ga0126369_128474812	3300012971	Tropical Forest Soil	GRRIALTGVNRRVLKVFEITKVERILLMFPTLSDAIEAFTNAGTA*
Ga0157374_122956042	3300013296	Miscanthus Rhizosphere	LAGVNHRVLKVFEITKVEQIFLMFPTLSDAIEGLTNAGSA*
Ga0134079_105574771	3300014166	Grasslands Soil	SAAKAGRRIALAGVNHRVLKVFEITKVEQIFLMFPTLSDAIEGLTNAGSA*
Ga0181528_108805111	3300014167	Bog	TTCTKAGRRIALTGVNKRVLKVFEITRVEQVFLMFPTLTDALEAFTNAGTA*
Ga0181525_101030631	3300014654	Bog	RVMKVFQITKTEPLFLMFPTVSDALEAFTNAGTA*
Ga0187821_101162061	3300017936	Freshwater Sediment	KSGRRVALTGVNKRVLKVFEITKVENVFLMFPTLGDAIEALTNAGTA
Ga0187819_104402501	3300017943	Freshwater Sediment	SCSKAGRRVALIGVNPRVRKVFEITKVENVLLLFPTLADALEALTNAGTA
Ga0187817_102789603	3300017955	Freshwater Sediment	YTSCAKSGRRVALTGVNKRVLKVFEITKVERIFLMFPTLSDALEAFTNAGTA
Ga0187780_100348205	3300017973	Tropical Peatland	SAYTSCAKAGRRIAITGVNQRVQKVFEITKVEQVFLIFPTLSDALEAFTNAGTA
Ga0187889_102679732	3300018023	Peatland	SKAGRRVALTGVNPRVRKVFEITKVENVLLLFPTLADALEALTNAGSA
Ga0187766_102784431	3300018058	Tropical Peatland	KAGRRIALTGVNQRVQKVFEITKVEQVFLIFPTLSDALEAFTNAGTA
Ga0187773_105688781	3300018064	Tropical Peatland	KRVLKVFEITKVEQVLLMFPTLADAIEAFTNAGTA
Ga0187772_100186187	3300018085	Tropical Peatland	GSLVSACTSCTKSGRRMALTGVNKRVLKVLEITKTERVFLMFPTLGDAIEAFTNAGTA
Ga0187772_104916132	3300018085	Tropical Peatland	LKAGRRVALTGVAPRVMKVFEITKTEPIFLMFPTLSDAIEALTNAGNA
Ga0066669_110479831	3300018482	Grasslands Soil	SAAKAGRRIALAGVNHRVLKVFEITKVEQIFLMFPTLSDAIEGLTNAGSA
Ga0193724_10647961	3300020062	Soil	RMALTGVNKRVRKVFEITKMEQIFLIFPTLSDALEAFTNAGTA
Ga0210403_107143803	3300020580	Soil	GVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA
Ga0210388_102917983	3300021181	Soil	SCISCQKSGRRMALTGVNQRVMKVFQITKTEPLFLMFPTLSDALEAFTNAGTA
Ga0210394_115554521	3300021420	Soil	AKAGRRMALTGVNKRVRKVFEITKVEQIFLMFPTLSDALEAFTNAGTA
Ga0210391_102925411	3300021433	Soil	ALTGVNQRVMKVFQITKTEPLFLMFPTVSDALEAFTNAGTA
Ga0210392_109023341	3300021475	Soil	GVNKRVRKVFEITKVEQIFLMFPTLSDALEAFTNAGTA
Ga0210398_104206063	3300021477	Soil	AKAGRRMALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA
Ga0210402_107950213	3300021478	Soil	CTSCAKSGRRMALTGVNKRVLKVFEITKMEQIFLMFPTLSDALEAFTNAGTA
Ga0126371_100219831	3300021560	Tropical Forest Soil	KRVLKVFEITKVENILLMFPTLGDAIEAFTNAGTA
Ga0242663_10552961	3300022523	Soil	ITGVNKRVLKVFEITKVEQILLMFPTLSDAIEAFTNAGTA
Ga0242673_10828361	3300022716	Soil	RMALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGSA
Ga0207671_115043752	3300025914	Corn Rhizosphere	ALAGVNHRVLKVFEITKVEQIFLMFPTLSDAIEGLTNAGSA
Ga0207663_100978371	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	NKRVRKVFEITKMEQIFLMFPTLSDALEAFTNAGTA
Ga0207700_102964421	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RIAITGVNKRVLKVFEITKVEQILLMFPTLSDAIEAFTNAGTA
Ga0207665_107984371	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ACTTCAKAGRRIALTGVNRRVLKVFEITKVEQIFLMFPTLGDAIEALTNAGSA
Ga0208531_10208072	3300026020	Rice Paddy Soil	KRVLKVFEITKVEQVFLMFPTLSDAIEAFTNAGSA
Ga0209803_13014471	3300026332	Soil	VNQRVMKVFEITKVEEIFLMFPTLSDALEAFTNAGTA
Ga0207803_10441802	3300027000	Tropical Forest Soil	TSCAKAGRRIALTGVNKRVLKVFEITKVENILLMFPTLGDAIEAFTNAGTA
Ga0208324_11887921	3300027604	Peatlands Soil	VNQRVQKVFEITKVENVLLVFPTLADALEAFTNAGTA
Ga0209656_101475731	3300027812	Bog Forest Soil	NQRVRKVFEITRVEQIFLMFPTLADALEAFTNAGNA
Ga0209580_100051367	3300027842	Surface Soil	KSGRRMALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA
Ga0209580_104249733	3300027842	Surface Soil	VNKRVMKVLEITKTEKVFLMFPTLGDAIEAFANAGTA
Ga0209167_105349063	3300027867	Surface Soil	NKRVQKVFEITKMERVFLMFPTLSDAIEAFTNAGSA
Ga0209169_103856791	3300027879	Soil	VNQRVQKVFEITKVEHVLLVFPTLADALEALTNAGSA
Ga0209275_102472903	3300027884	Soil	RRFAITGVNARVRRVFEITRVDNVLLTFPTLSDALEAFTNAGSA
Ga0209380_101182334	3300027889	Soil	VNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA
Ga0209698_103057241	3300027911	Watersheds	NKRVLKVFEITKVEHILLMFPTLSDAIEAFTNAGTA
Ga0265357_10127093	3300028023	Rhizosphere	KRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGSA
Ga0265318_103630652	3300028577	Rhizosphere	GVNKRVLRVFEITKVEQIFLMFPTLSDALEAFTNAGTA
Ga0265338_105660701	3300028800	Rhizosphere	KAGRRMALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA
Ga0302229_103286432	3300028879	Palsa	KAGRRMALTGVNQRVLKVFQITKTEPLFLMFPTVSDALEAFTNAGTA
Ga0302182_101617483	3300030054	Palsa	ACTSCNKAGRRIALTGVNKRVLKVFEITKVESVFLMFPTLADAIEAFTNAGTA
Ga0311370_119400902	3300030503	Palsa	SCQKAGRRVALIGVNPRVLKVFEITKMEPIFLMFPTISDALEAFTNAGTA
Ga0170834_1128922951	3300031057	Forest Soil	CTSCAKAGRRMALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGTA
Ga0265339_103643201	3300031249	Rhizosphere	VSACTSCTKSGRRMALTGVNKRVRKVFEITRVEQIFLMFPTLSDALEAFTNAGTA
Ga0302326_102156544	3300031525	Palsa	TGVNQRVLKVFQITKTEPLFLMFPTVSDALEAFTNAGTA
Ga0265342_102587933	3300031712	Rhizosphere	SACTSCAKSGRRMALTGVNRRVRKVFEITKVEQIFLMFPTLNDALEAFTNAGTA
Ga0307474_115165852	3300031718	Hardwood Forest Soil	KAGRRMALTGVNKRVLKVFEITRVEQIFLMFPTLSDALEAFTNAGSA
Ga0306917_112404751	3300031719	Soil	VSACTSCAKAGRRIALTGVNKRVLKVFEITKVENILLMFPTLADAIEAFTNAGTA
Ga0318502_109766581	3300031747	Soil	TGVNRRVLKVFEITKVENILLMFPTLSDAIEAFTNAGTA
Ga0307478_1000236324	3300031823	Hardwood Forest Soil	LTGVNKRVLKVFEITKVERIFLMFPTLSDALEAFTNAGTA
Ga0310917_106844793	3300031833	Soil	KAGRRVALTGINKRVLKVFEITKVEQIFLMFPTLSDAIEAFTNAGTA
Ga0335085_118614412	3300032770	Soil	AKSGRRMALTGVNKRVLKVFEITKMEQIFLMFPTLSDALEAFTNAGTA
Ga0335085_125394902	3300032770	Soil	RRMALTGVNKRVLKVFEITKVEQIFLMFPTLSDAIEAFTNAGTA
Ga0335079_113903462	3300032783	Soil	NARVRKVFEITKVENVLLTFPTLADALEALTNAGTA
Ga0335078_118628311	3300032805	Soil	KRVLKVFEITKVENVFLMFPTLSDALEAFTNAGTA
Ga0335078_124120592	3300032805	Soil	TSFAKSGRRLALTGVNKRVQKVFEITKVEQIFLMFPTLDDALEAFTNAGSA
Ga0335081_123828412	3300032892	Soil	LTGVNKRVLKVFEITKVERVFLMFPTLGDAIEAFTNAGTA
Ga0335075_112556772	3300032896	Soil	VSACTSCTKAGRRIALTGVNKRVLKVFEITKVEHVFLMFPTLSDAIEAFTNAGTA
Ga0335071_100469336	3300032897	Soil	RRLALTGVNKRVQKVFEITKVEQIFLMFPTLDDALEAFTNAGSA
Ga0335071_108170171	3300032897	Soil	TSCTKAGRRMALTGVNKRVLKVFEITKVEQIFLMFPTLSDAIEAFTNAGTA
Ga0335071_118097582	3300032897	Soil	GSLISACTSCTKAGRRVALTGVNQRVLKVFEITRVERALLLFPTLSDALEALTNAGTA
Ga0335072_108641983	3300032898	Soil	CAKSGRRMALTGVNKRVLKVFEITKMEQIFLMFPTLSDALEAFTNAGTA
Ga0335076_101005441	3300032955	Soil	SCAKSGRRVALTGVNKRVLKVFEITKVEQIFLMFPTLDDAIEAFTNAGTA
Ga0335073_120709621	3300033134	Soil	SACTSCAKSGRRMALTGVNKRVLKVFEITKMEQIFLMFPTLSDALEAFTNAGTA
Ga0335077_117310081	3300033158	Soil	VKSGRRMALTGVNKRVLKVFEITKVEQIFLMFPTLSDAIEAFTNAGTA
Ga0326726_117682091	3300033433	Peat Soil	SLVTACTSCAKAGRRIALTGVNKRVLKVFEITKVEQILLMFPTLGDAIEAFTNAGTA
Ga0334790_210143_79_207	3300033887	Soil	MALTGVNKRVRKVFEITKVEQIFLMFPTLSDALEAFTNAGTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084565

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences