Metagenome / Metatranscriptome Family F084543

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084543
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	58 residues
Representative Sequence	MELPKKLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRPVLDHYKLNTEAAE
Number of Associated Samples	73
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.93 %
% of genes near scaffold ends (potentially truncated)	16.96 %
% of genes from short scaffolds (< 2000 bps)	72.32 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.214 % of family members)
Environment Ontology (ENVO)	Unclassified (29.464 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.214 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.65% β-sheet: 0.00% Coil/Unstructured: 42.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00471	Ribosomal_L33	26.79
PF09361	Phasin_2	8.93
PF00773	RNB	3.57
PF13763	DUF4167	3.57
PF00293	NUDIX	2.68
PF13368	Toprim_C_rpt	1.79
PF13432	TPR_16	1.79
PF03401	TctC	0.89
PF13406	SLT_2	0.89
PF01321	Creatinase_N	0.89
PF00575	S1	0.89
PF02321	OEP	0.89
PF00990	GGDEF	0.89
PF13243	SQHop_cyclase_C	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0267	Ribosomal protein L33	Translation, ribosomal structure and biogenesis [J]	26.79
COG0557	Exoribonuclease R	Transcription [K]	3.57
COG4776	Exoribonuclease II	Transcription [K]	3.57
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.79
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	0.89
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.57 %
Unclassified	root	N/A	46.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.57 %
Unclassified	root	N/A	46.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.57 %
Unclassified	root	N/A	46.43 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.21 %
Unclassified	root	N/A	46.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.43 %
Unclassified	root	N/A	46.43 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39.29 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.89 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.46 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.57 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.68 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.89 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.46 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.57 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	2.68 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.89 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.46 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.57 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2.68 %
Oscillatoriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae	0.89 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.46 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.57 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2.68 %
Bradyrhizobium japonicum SEMIA 5079	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum → Bradyrhizobium japonicum SEMIA 5079	0.89 %
Phormidium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Phormidium	0.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.46 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.57 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2.68 %
Phormidium tenue	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Phormidium → Phormidium tenue	0.89 %
Bradyrhizobium japonicum SEMIA 5079	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum → Bradyrhizobium japonicum SEMIA 5079	0.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10022147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3900	Open in IMG/M
3300001593\|JGI12635J15846_10293916	Not Available	1019	Open in IMG/M
3300001593\|JGI12635J15846_10616314	Not Available	630	Open in IMG/M
3300003505\|JGIcombinedJ51221_10015939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	2558	Open in IMG/M
3300003505\|JGIcombinedJ51221_10089001	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300004091\|Ga0062387_100771639	Not Available	713	Open in IMG/M
3300004631\|Ga0058899_11991388	Not Available	571	Open in IMG/M
3300004631\|Ga0058899_12038987	Not Available	776	Open in IMG/M
3300005434\|Ga0070709_10116332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1805	Open in IMG/M
3300005437\|Ga0070710_10484752	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300005538\|Ga0070731_10022324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4359	Open in IMG/M
3300005538\|Ga0070731_10309591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1049	Open in IMG/M
3300005602\|Ga0070762_10077143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1888	Open in IMG/M
3300005610\|Ga0070763_10111943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1388	Open in IMG/M
3300005921\|Ga0070766_10114663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1613	Open in IMG/M
3300005921\|Ga0070766_10713027	Not Available	680	Open in IMG/M
3300005921\|Ga0070766_11099236	Not Available	549	Open in IMG/M
3300006102\|Ga0075015_100330889	Not Available	845	Open in IMG/M
3300006175\|Ga0070712_100519631	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300006176\|Ga0070765_100175881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1928	Open in IMG/M
3300006176\|Ga0070765_101808202	Not Available	573	Open in IMG/M
3300006354\|Ga0075021_10905609	Not Available	573	Open in IMG/M
3300006893\|Ga0073928_10321306	Not Available	1156	Open in IMG/M
3300009523\|Ga0116221_1137479	Not Available	1068	Open in IMG/M
3300009523\|Ga0116221_1385793	Not Available	609	Open in IMG/M
3300009524\|Ga0116225_1034596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Phormidium → Phormidium tenue	2490	Open in IMG/M
3300009525\|Ga0116220_10037251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2007	Open in IMG/M
3300009525\|Ga0116220_10259979	Not Available	759	Open in IMG/M
3300009525\|Ga0116220_10308800	Not Available	697	Open in IMG/M
3300010379\|Ga0136449_100479395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2170	Open in IMG/M
3300010379\|Ga0136449_102026187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	849	Open in IMG/M
3300011120\|Ga0150983_10771513	Not Available	590	Open in IMG/M
3300011120\|Ga0150983_14191786	Not Available	506	Open in IMG/M
3300011120\|Ga0150983_15603238	Not Available	565	Open in IMG/M
3300014501\|Ga0182024_10030377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9288	Open in IMG/M
3300014501\|Ga0182024_10114617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3877	Open in IMG/M
3300017940\|Ga0187853_10131186	Not Available	1212	Open in IMG/M
3300018013\|Ga0187873_1166171	Not Available	837	Open in IMG/M
3300019161\|Ga0184602_111699	Not Available	580	Open in IMG/M
3300019888\|Ga0193751_1015170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3933	Open in IMG/M
3300020021\|Ga0193726_1000174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	88756	Open in IMG/M
3300020582\|Ga0210395_10011655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6537	Open in IMG/M
3300020582\|Ga0210395_10537977	Not Available	878	Open in IMG/M
3300020582\|Ga0210395_11273720	Not Available	539	Open in IMG/M
3300021088\|Ga0210404_10020182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2856	Open in IMG/M
3300021088\|Ga0210404_10528445	Not Available	668	Open in IMG/M
3300021170\|Ga0210400_11083950	Not Available	649	Open in IMG/M
3300021171\|Ga0210405_10021042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5292	Open in IMG/M
3300021171\|Ga0210405_10143941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1886	Open in IMG/M
3300021178\|Ga0210408_10000122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	121329	Open in IMG/M
3300021180\|Ga0210396_10000025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	341017	Open in IMG/M
3300021180\|Ga0210396_10072766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3127	Open in IMG/M
3300021180\|Ga0210396_10185680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1861	Open in IMG/M
3300021180\|Ga0210396_10925822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	742	Open in IMG/M
3300021180\|Ga0210396_11296697	Not Available	606	Open in IMG/M
3300021404\|Ga0210389_11463307	Not Available	520	Open in IMG/M
3300021406\|Ga0210386_11803899	Not Available	503	Open in IMG/M
3300021420\|Ga0210394_10022595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5783	Open in IMG/M
3300021420\|Ga0210394_11209957	Not Available	648	Open in IMG/M
3300021433\|Ga0210391_10140288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum → Bradyrhizobium japonicum SEMIA 5079	1903	Open in IMG/M
3300021477\|Ga0210398_10005278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12016	Open in IMG/M
3300021478\|Ga0210402_10102825	All Organisms → cellular organisms → Bacteria → Proteobacteria	2568	Open in IMG/M
3300021478\|Ga0210402_11298719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	655	Open in IMG/M
3300021479\|Ga0210410_10014541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6783	Open in IMG/M
3300021479\|Ga0210410_10557315	Not Available	1021	Open in IMG/M
3300022557\|Ga0212123_10084130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2671	Open in IMG/M
3300022557\|Ga0212123_10287314	Not Available	1157	Open in IMG/M
3300022557\|Ga0212123_10558329	Not Available	731	Open in IMG/M
3300023259\|Ga0224551_1018652	Not Available	1175	Open in IMG/M
3300027439\|Ga0209332_1000920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6522	Open in IMG/M
3300027521\|Ga0209524_1098221	Not Available	614	Open in IMG/M
3300027565\|Ga0209219_1083828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	789	Open in IMG/M
3300027625\|Ga0208044_1002847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8235	Open in IMG/M
3300027625\|Ga0208044_1181240	Not Available	571	Open in IMG/M
3300027635\|Ga0209625_1022832	Not Available	1389	Open in IMG/M
3300027641\|Ga0208827_1006447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4572	Open in IMG/M
3300027678\|Ga0209011_1025418	All Organisms → cellular organisms → Bacteria → Proteobacteria	1904	Open in IMG/M
3300027853\|Ga0209274_10054962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1897	Open in IMG/M
3300027855\|Ga0209693_10023103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3003	Open in IMG/M
3300027869\|Ga0209579_10004496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9733	Open in IMG/M
3300027884\|Ga0209275_10003863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6195	Open in IMG/M
3300027889\|Ga0209380_10100372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1672	Open in IMG/M
3300027889\|Ga0209380_10504229	Not Available	706	Open in IMG/M
3300028023\|Ga0265357_1029719	Not Available	622	Open in IMG/M
3300028047\|Ga0209526_10047331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3027	Open in IMG/M
3300028906\|Ga0308309_10077799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2497	Open in IMG/M
3300028906\|Ga0308309_10903818	Not Available	766	Open in IMG/M
3300028906\|Ga0308309_10948084	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300030659\|Ga0316363_10068973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1629	Open in IMG/M
3300030763\|Ga0265763_1001496	Not Available	1679	Open in IMG/M
3300030813\|Ga0265750_1030819	Not Available	737	Open in IMG/M
3300030862\|Ga0265753_1062520	Not Available	687	Open in IMG/M
3300030945\|Ga0075373_11425309	Not Available	736	Open in IMG/M
3300030997\|Ga0073997_11973314	Not Available	560	Open in IMG/M
3300031057\|Ga0170834_102837342	Not Available	551	Open in IMG/M
3300031057\|Ga0170834_108878856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	512	Open in IMG/M
3300031090\|Ga0265760_10007889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3041	Open in IMG/M
3300031231\|Ga0170824_111102803	Not Available	507	Open in IMG/M
3300031231\|Ga0170824_115243987	Not Available	1123	Open in IMG/M
3300031231\|Ga0170824_118198757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1200	Open in IMG/M
3300031231\|Ga0170824_126971580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1520	Open in IMG/M
3300031231\|Ga0170824_128413497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1437	Open in IMG/M
3300031469\|Ga0170819_12564199	Not Available	979	Open in IMG/M
3300031708\|Ga0310686_108487585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1392	Open in IMG/M
3300031708\|Ga0310686_110682095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1716	Open in IMG/M
3300031708\|Ga0310686_113198036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	953	Open in IMG/M
3300031715\|Ga0307476_10000567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	27244	Open in IMG/M
3300031753\|Ga0307477_10342499	Not Available	1029	Open in IMG/M
3300031754\|Ga0307475_11135177	Not Available	611	Open in IMG/M
3300032160\|Ga0311301_10941096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1155	Open in IMG/M
3300032160\|Ga0311301_11023399	Not Available	1088	Open in IMG/M
3300032515\|Ga0348332_11023694	Not Available	589	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.07%
Aquatic	Environmental → Aquatic	8.04%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.29%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.57%
Freshwater	Environmental → Aquatic → Freshwater	2.68%
Sediment	Environmental → Aquatic → Sediment	1.79%
Peat	Environmental → Terrestrial → Peat	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.04%
Loam	Environmental → Terrestrial → Soil → Loam	29.46%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	26.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.21%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	7.14%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300019161	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100221471	3300000567	Peatlands Soil	MELPKILERHTAKHIDELIDRITALRMRWLRHVETQLASQQSRHAPDLDLYKLGGEAAE*
JGI12635J15846_102939163	3300001593	Forest Soil	METLNKREKYTAKHISEIIDRITALRVRWLRHVETQLASQQSRPDLDNYKLSAEAAE*
JGI12635J15846_106163142	3300001593	Forest Soil	MKTPKTLEKYTADHIDEITDRIVALRVSWLRHVETQLASQQSRAVIDRYKLSTEAAE*
JGIcombinedJ51221_100159393	3300003505	Forest Soil	MELPKKLEKYTAKHVNELVDRMTALRMRWLRHVEMQLASQQSRHAPALDRYKLSGETAE*
JGIcombinedJ51221_100890011	3300003505	Forest Soil	MELPKKLEKYTAKHIDEITDRIVALRVRWLRHVETELASQQSRPVLDHYKLNTEAAE*
Ga0062387_1007716391	3300004091	Bog Forest Soil	MELPEKLEKYTAKHVNEITDRITALRVRWLRHVETQLASQQSRHANVSALDRYKLSAEAAE*
Ga0058899_119913881	3300004631	Forest Soil	MELPKKLEKYTTKHINELVDRMTALRMRWLRHVETQLASQQSRRVPDLDHYKLGAEAAE*
Ga0058899_120389872	3300004631	Forest Soil	MEPSKRLEKYTAKHIDEITDRIIALRVRWLRHVETQLATQQSRPVLDHYKLSSEAAE*
Ga0070709_101163324	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MEPPKRLEKYTVKHISEITDRMTALRIRWLRHVETQLASQQRRPAPAPAPALDHYGFSSEAAE*
Ga0070710_104847521	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	METPSGLEKYTVKHISEITDRITALRMRWLRHVETQLASQQSRPAPAPARALDHYEFGTEAAE*
Ga0070731_100223245	3300005538	Surface Soil	METPTKREKYTAKRISEITDRITALRVRWLRHVETQIASQQSRPILEHYKLNTEAAE*
Ga0070731_103095912	3300005538	Surface Soil	MELPKKLEKYTAKHVNELVDRMTALRMRWLRHVEMQLASQQSRHAPALDRYKLSGEAAE*
Ga0070762_100771433	3300005602	Soil	MEPAKILEKYTAKHIDEITDRIIALRVRWLRHVETELASQQSRPVLDRYEFSTDAAD*
Ga0070763_101119432	3300005610	Soil	MEPAKILEKYTAKHIDEITDRIIALRVRWLRHVETELASQQSRPVLDRYEFSTDAAE*
Ga0070766_101146633	3300005921	Soil	MELPKKLEKYTAKHVNVLVDRMTALRMRWLRHVETQLASQQSRNAPALDHYKLSGGAAE*
Ga0070766_107130271	3300005921	Soil	MELPEKLEKYTATHVNEITDRIAALRVRWLRHVETQLASQQSRHANASALDRYKLSAEAAE*
Ga0070766_110992361	3300005921	Soil	MKTAKTLEKYTAKNIDEITDRIMALRVSWLRHVQTQLASQQSRPVLDHYKLSTEAAE*
Ga0075015_1003308892	3300006102	Watersheds	MLKMKTAKTPEKYTAKHIGEITDRIVALRVSWLRHVKTQLASQQGRDVLDHYKLSTEAAE
Ga0070712_1005196312	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	METPNGLEKYTVKHISEITDRITALRMRWLRHVETQLASQQSRPAPAPARALDHYEFATEAAE*
Ga0070765_1001758813	3300006176	Soil	MELPEKLEKDTAKHVNEITDRILTLRVRWLRHVETQLASQQSRHADVPALDRYKLSAEAAE*
Ga0070765_1018082022	3300006176	Soil	METPTKREKYTAKRVSEITDRITALRVRWLRHVETQIASQQSRPILEHYKLNTEAAE*
Ga0075021_109056091	3300006354	Watersheds	AKTPEKYTAKHIGEITDRIVALRVSWLRHVKTQLASQQGRDVLDHYKLSTEAAE*
Ga0073928_103213062	3300006893	Iron-Sulfur Acid Spring	MEPSKILEKYTAKHIDEITDRIIALRVRWLRHVETQLASQRSRPVLDRYELSSEAAE*
Ga0116221_11374791	3300009523	Peatlands Soil	KYTAKHIDELLDRISALRMRWLRHVEMQLASQQSRHAPDHYKLGAEAAE*
Ga0116221_13857932	3300009523	Peatlands Soil	MELPKRLEKYTAKHIVELVDRITALRMRWLRHVETQLASQQSRHAPDLDLYKLGGEAAE*
Ga0116225_10345964	3300009524	Peatlands Soil	MELPRKLEKYTAKHIDELLDRISALRMRWLLHVETQLASQRSRHAPDLDHYKLGAEAAE*
Ga0116220_100372514	3300009525	Peatlands Soil	ELPKRLEKYTAKHIVELVDRITALRMRWLRHVETQLASQQSRHAPDLDLYKLGGEAAE*
Ga0116220_102599791	3300009525	Peatlands Soil	MELPRKLEKYTAKHIDELLDRISALRMRWLRHVEMQLASQQSRHAPDHYKLGAEAAE*
Ga0116220_103088001	3300009525	Peatlands Soil	METSKKLEKYTAKHISEITDRITALRVRWLRHVETQLASQQSRPTPALDHYKL
Ga0136449_1004793955	3300010379	Peatlands Soil	MKTAKTPEKYTAKPVDEIIDRIVALRVRWLRHVETQLASQQSRPVLDHYKLSAEAAE*
Ga0136449_1020261873	3300010379	Peatlands Soil	METSKKLEKYTAKHISEITDRITALRVRWLRHVETQLASQQSRPTPALDHYKLSTQAAE*
Ga0150983_107715131	3300011120	Forest Soil	CRRNQVQVIMFKMKTPKTLENYTAEHVDEITDRIIALRVRWLRHVETQLASQQSRAVLDHYKLSTEAAE*
Ga0150983_141917862	3300011120	Forest Soil	MEPAKILEKYTAKHIDEITDRIIALRVRWLRHVETELASQQSRPTPAVVHYKHSTQAAE*
Ga0150983_156032381	3300011120	Forest Soil	MELPKKLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRPVLDHYKLNTEAAE*
Ga0182024_1003037710	3300014501	Permafrost	MELPEKLEKYTAKHVNEITDRIAALRVRWLRHVETQLASQQSRQTNASALDRYKLSAEAAE*
Ga0182024_101146175	3300014501	Permafrost	MELPEKLEKYTAKHVNEITDRIIALRVRWLRHVETQLASQQSRHANAPALDRYKLSAEAAE*
Ga0187853_101311862	3300017940	Peatland	MELPRKLEKYTAKHIDELLDRISALRMRWLLHVETQLASQRSRHAPDLDHYKLGAEAAE
Ga0187873_11661712	3300018013	Peatland	ELLDRISALRMRWLLHVETQLASQRSRHAPDLDHYKLGAEAAE
Ga0184602_1116991	3300019161	Soil	MELPKKLEKYTAKHVNVLVDRMTALRMRWLRHVETQLASQQSRNAPALDHYKLSGEAAE
Ga0193751_10151704	3300019888	Soil	MFKMKTPKTLEKYTAKHIDEITDRIIALRVRWLRHVETQLASQQSRAVLDHYKLETEAAE
Ga0193726_100017463	3300020021	Soil	MELPGKEKYTAKHVNEITDRIIALRVRWLRHVETQLASQQSRHANVPALDRYKLSAEAAE
Ga0210395_100116558	3300020582	Soil	MELPKKLEKYTAKHVNELVDRMTALRMRWLRHVEMQLASQQSRHAPALDRYKLSGETAE
Ga0210395_105379771	3300020582	Soil	MELPEKLEKDTAKHVNEITDRILTLRVRWLRHVETQLASQQSRHADVPALDRYKLSAEAA
Ga0210395_112737201	3300020582	Soil	FKMKTPKTLEKYTAKHIGEITDRIVALRVRWLRHVETQLASQQSRAVPDHYKLGSEAAE
Ga0210404_100201823	3300021088	Soil	MDAPEKLEKYTAKHVSEIVDRIAALRLRWLRHVETQLVSQQSRSALDRYKLSSEAAE
Ga0210404_105284451	3300021088	Soil	MELPKKLEKYTAKHVNELVDRMTALRMRWLRHVEMQLASQQSRHAPALDRYKLSGEAAE
Ga0210400_110839502	3300021170	Soil	MFRMKTPKTLEKYTAKHIDEITDRIVALRARWLRHVETQLASQQSRAVLDHYKLRTEAAE
Ga0210405_100210423	3300021171	Soil	MELPKKLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRPVLDHYKLNTEAAE
Ga0210405_101439413	3300021171	Soil	MELPKKLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRPVLDRYKLNTEAAE
Ga0210408_100001229	3300021178	Soil	METPKRLEKYTVKHISEITDRMTALRVRWLRHVETQLASQQSRPAPAPAPARALDHYEFSTEAAE
Ga0210396_10000025120	3300021180	Soil	MELPKKLEKYTAKHIDEITDRIVALRVRWLRHVETELASQQSRPVLDHYKLNTEAAE
Ga0210396_100727663	3300021180	Soil	MEAPEKLEKYTAKHVSEIVDRIAALRMRWLRHVETQLVSQQSRSALDRYKLSSEAAE
Ga0210396_101856803	3300021180	Soil	MELPKKLEKYTAKHVNELVDRMTALRTRWLRHVETQLASQQRRHAPALDHYKLSGEAAE
Ga0210396_109258222	3300021180	Soil	MEPSKILEKYTAKHVDEITDRIIALRVRWLRHVETELASQQSRPVLDRYELSTEAAE
Ga0210396_112966971	3300021180	Soil	MELPEKLEKDTAKHVNEITDRILTLRVRWLRHVETQLASQQSRHADVPALDRYK
Ga0210389_114633072	3300021404	Soil	MFKMKTPKTLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQRNRPVLDRYKLSSEAAE
Ga0210386_118038991	3300021406	Soil	MELPKKLEKYTAKHVNELVDRMTALRTRWLRHVETQLASQQSRHTPALDRYKLSGEAAE
Ga0210394_100225954	3300021420	Soil	METPTNREKYTAKRISEITDRITALRVRWLRHVETQLASRQSRPSPALDHYKLSSLAAE
Ga0210394_112099571	3300021420	Soil	ALGFAAVVIRFKMETLNKREKYTAKHISEIIDRITALRVRWLCHVETQLASQQSRPDLDDYTLSAEAAE
Ga0210391_101402881	3300021433	Soil	VNELVDRMTALRMRWLRHVEMQLASQQSRHAPALDRYKLSGEAAE
Ga0210398_100052784	3300021477	Soil	MFKMKTPKTLEKYTAKHIDEITDRIVALRARWLRHVETQLASQQSRAVPDHYKLSTEAAE
Ga0210402_101028255	3300021478	Soil	MFKMKTPKTLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVLDPYKLTIGAAE
Ga0210402_112987194	3300021478	Soil	YTAKHIDEITDRIVALRVRWLRHVETQLASQRNRPVLDRYKLSSEAAE
Ga0210410_1001454111	3300021479	Soil	MFKMKTPKTLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVPDHYKLRSEAAE
Ga0210410_105573151	3300021479	Soil	ITDRILTLRVRWLRHVETQLASQQSRHADVPALDRYKLSAEAAE
Ga0212123_100841303	3300022557	Iron-Sulfur Acid Spring	MFKMKTPKTLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVPDHYKLGSEAAE
Ga0212123_102873143	3300022557	Iron-Sulfur Acid Spring	MELPEKLEKYTAKHVNEITDRITALRVRWLRHVETQLASQQSRQANASAIDHYKLSTEAA
Ga0212123_105583293	3300022557	Iron-Sulfur Acid Spring	MEPSKILEKYTAKHIDEITDRIIALRVRWLRHVETQLASQRSRPVLDRYELSSEAAE
Ga0224551_10186523	3300023259	Soil	MFKMKTPKTLEQYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVLDHYKLSTEAAE
Ga0209332_10009204	3300027439	Forest Soil	METLNKREKYTAKHISEIIDRITALRVRWLRHVETQLASQQSRPDLDNYKLSAEAAE
Ga0209524_10982212	3300027521	Forest Soil	MFKMKTPKTLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVPDHYKLGS
Ga0209219_10838282	3300027565	Forest Soil	MKTAKTLEKYTAKNIDEITDRIMALRVSWLRHVETQLASQQSRPVLDHYKLSTEAAE
Ga0208044_10028471	3300027625	Peatlands Soil	IVELVDRITALRMRWLRHVETQLASQQSRHAPDLDLYKLGGEAAE
Ga0208044_11812401	3300027625	Peatlands Soil	AQAPRSKMELPRKLEKYTAKHIDELLDRISALRMRWLLHVETQLASQRSRHAPDLDHYKLGAEAAE
Ga0209625_10228321	3300027635	Forest Soil	MKTPKTLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVLDHYKLETEAAE
Ga0208827_10064471	3300027641	Peatlands Soil	MELPKRLEKYTAKHIVELVDRITALRMRWLRHVETQLASQQSRHAPDLDLYKLGGEAAE
Ga0209011_10254183	3300027678	Forest Soil	METAKTLEKYTAKHVGEITDRIIALRVSWLRHVETKLASQQSRPVLDRFKLSTEAAE
Ga0209274_100549624	3300027853	Soil	METPKKRQKYTAKHISEITDRITALRVRWLRHVETQLASQQSRPTPAVVHYKHSTQAAE
Ga0209693_100231033	3300027855	Soil	MEPAKILEKYTAKHIDEITDRIIALRVRWLRHVETELASQQSRPVLDRYEFSTDAAE
Ga0209579_100044966	3300027869	Surface Soil	METPTKREKYTAKRISEITDRITALRVRWLRHVETQIASQQSRPILEHYKLNTEAAE
Ga0209275_1000386310	3300027884	Soil	MEPAKILEKYTAKHIDEITDRIIALRVRWLRHVETELASQQSRPVLDRYEFSTDAAD
Ga0209380_101003722	3300027889	Soil	MELPKKLEKYTAKHVNVLVDRMTALRMRWLRHVETQLASQQSRNAPALDHYKLSGGAAE
Ga0209380_105042292	3300027889	Soil	MKTAKTLEKYTAKNIDEITDRIMALRVSWLRHVQTQLASQQSRPVLDHYKLSTEAAE
Ga0265357_10297191	3300028023	Rhizosphere	MFKMKTPKTLEEYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVLDTYKLRTEAAE
Ga0209526_100473314	3300028047	Forest Soil	MFKMKTPKTLEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRAVLDHYKLGTEAAE
Ga0308309_100777991	3300028906	Soil	METPTKREKYTAKRVSEITDRITALRVRWLRHVETQIASQQSRPILEHYKLNTEAAE
Ga0308309_109038181	3300028906	Soil	MELPEKLEKYTAKHVNEITDRITALRVRWLRHVETQLASQQSRHANAPDRYKLSAEAAE
Ga0308309_109480841	3300028906	Soil	RRNQVEVIMFKMKTPKTAEKYSAKHVDEITDRIVALRVRWLRHVEIQLASQQSRPVLDPYKLSTEAAE
Ga0316363_100689733	3300030659	Peatlands Soil	MELPKILERHTAKHIDELIDRITALRMRWLRHVETQLASQQSRHAPDLDLYKLGGEAAE
Ga0265763_10014963	3300030763	Soil	MFKMKTPKTLEEYTAKHIDEITDRIVALRARWLRHVETQLASQQSRAVLDHYKLRTEAAE
Ga0265750_10308192	3300030813	Soil	LEKYTAKHVSEIVDRIAALRMRWLRHVETQLVSQQSRSALDRYKLSSEAAE
Ga0265753_10625202	3300030862	Soil	MFKMKTPKTLEEYTAKHIDEITDRIVALRARWLRHVETQLASQQSRAVLDTYKLRTEAAE
Ga0075373_114253092	3300030945	Soil	MFKMKTPKTPEKYTAKHIDEITDRIVALRVSWLCHVKTQLASQQGRDVLDHYKLSAEAAE
Ga0073997_119733141	3300030997	Soil	MELPEKLEKYTAKHVNEITDRITALRVRWLRHVETQLASQQSRDANASALDRYKLSAEAA
Ga0170834_1028373421	3300031057	Forest Soil	MFKMKTAKTPEKYTAKHIGEITDRIVALRVRWLRHVETQLASQQSRPVLDHYKLETEAAE
Ga0170834_1088788561	3300031057	Forest Soil	MEPAKILEKYTAKHIDEITDRIIALRVRWLRHVETELASQQSRPVPDRYELSTEAAE
Ga0265760_100078894	3300031090	Soil	MELPKKLEKYTAKHVNELVDRMTALRMRWLRHVETQLASQQSRNAPALDHYKLSGEAAE
Ga0170824_1111028031	3300031231	Forest Soil	MFKMKTPKTPEKVTAKHIDEITDRIVALRVSWLRHVKTQLASRQGRDVLDHYKLSTETAE
Ga0170824_1152439872	3300031231	Forest Soil	MFKMKTPKTPEKYTAKHIDEITDRIVALRVRWLRHVETQLASQQSRPVLDHYKLRTEAAE
Ga0170824_1181987573	3300031231	Forest Soil	MFKMKTPKTPEKYTAKHIDEITDRIVALRVSWLRHVKTQLASQQGRDVLDHYKLSAEAAE
Ga0170824_1269715801	3300031231	Forest Soil	MTTSKTLEKYTAKHIDEITDRIIALRVSWLRHVETQLASQQSRPVLDHYKLSTEAAE
Ga0170824_1284134972	3300031231	Forest Soil	MFKMKTPKTLEKYTATHIDEITDRIVALRVRWLRHVETQLASQQSRPVLDHYKLETEAAE
Ga0170819_125641993	3300031469	Forest Soil	MFKMKTPKTLEKYTAKHIDEITDRIIALRVRWLRHVETQLASQQSRAVLDDYKLSTEAAE
Ga0310686_1084875853	3300031708	Soil	QALRSKMELPKKLEKYTAKHIDEITDRIIALRMRWLRHVETQLASQQGRHAPVRYKLSSEAAE
Ga0310686_1106820951	3300031708	Soil	MELPKKLEKYTAKHINELVDRMTALRMRWLRHVETQLASQQSRPTPALDHYKLSTQAAE
Ga0310686_1131980362	3300031708	Soil	MELPKKLEKYTAEHIDELVDRITALRMRWLRHVETQLASQQSRRAPGLDHYNLGAEAAE
Ga0307476_1000056727	3300031715	Hardwood Forest Soil	METLKKREEYTAKHISEIIDRITALRVHWLRHVETQLASQQSRPDLDDYKLSAEAAE
Ga0307477_103424991	3300031753	Hardwood Forest Soil	MFKMKTPKTLEKYTAKHIDEITDRIVALRARWLRHVETQLASQQSRAVLDHYKLRTEAAE
Ga0307475_111351771	3300031754	Hardwood Forest Soil	VQAIRFKMETPKRLEKYTVKHISEITDRMTALRIRWLRHVVTQLASQQSRSAPAPAPARALDHYEFSAEAAE
Ga0311301_109410963	3300032160	Peatlands Soil	METSKKLEKYTAKHISEITDRITALRVRWLRHVETQLASQQSRPTPALDHYKLSTQAAE
Ga0311301_110233991	3300032160	Peatlands Soil	MKTAKTPEKYTAKPVDEIIDRIVALRVRWLRHVETQLASQQSRPVLDHYKLSAEAAE
Ga0348332_110236941	3300032515	Plant Litter	MELPKKLEKYTAKHVNELVDRMTALRTRWLRHVETQLASQQRRHAPDHYKLSGEAAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084543

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences