NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F084491

Metagenome / Metatranscriptome Family F084491

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084491
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 67 residues
Representative Sequence SDGLKPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Number of Associated Samples 91
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.89 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (99.107 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa
(23.214 % of family members)
Environment Ontology (ENVO) Unclassified
(33.036 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(38.393 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.26%    β-sheet: 0.00%    Coil/Unstructured: 67.74%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF16198TruB_C_2 1.79
PF13672PP2C_2 1.79
PF07593UnbV_ASPIC 1.79
PF06739SBBP 1.79
PF13649Methyltransf_25 1.79
PF08352oligo_HPY 1.79
PF04551GcpE 1.79
PF00589Phage_integrase 1.79
PF08281Sigma70_r4_2 1.79
PF02417Chromate_transp 0.89
PF07885Ion_trans_2 0.89
PF13229Beta_helix 0.89
PF07819PGAP1 0.89
PF13358DDE_3 0.89
PF13450NAD_binding_8 0.89
PF02357NusG 0.89
PF10387DUF2442 0.89
PF01872RibD_C 0.89
PF14791DNA_pol_B_thumb 0.89
PF03808Glyco_tran_WecG 0.89
PF07690MFS_1 0.89
PF03928HbpS-like 0.89
PF01841Transglut_core 0.89
PF064393keto-disac_hyd 0.89
PF13282DUF4070 0.89
PF07394DUF1501 0.89
PF00710Asparaginase 0.89
PF06296RelE 0.89
PF00478IMPDH 0.89
PF00873ACR_tran 0.89
PF00196GerE 0.89
PF07635PSCyt1 0.89
PF04199Cyclase 0.89
PF00078RVT_1 0.89
PF14454Prok_Ub 0.89
PF11412DsbC 0.89
PF13545HTH_Crp_2 0.89
PF01695IstB_IS21 0.89
PF13620CarboxypepD_reg 0.89
PF01609DDE_Tnp_1 0.89
PF08446PAS_2 0.89
PF01029NusB 0.89
PF04389Peptidase_M28 0.89
PF00656Peptidase_C14 0.89
PF13419HAD_2 0.89
PF13468Glyoxalase_3 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG0252L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit DTranslation, ribosomal structure and biogenesis [J] 1.79
COG08214-hydroxy-3-methylbut-2-enyl diphosphate synthase IspG/GcpELipid transport and metabolism [I] 1.79
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.89
COG0250Transcription termination/antitermination protein NusGTranscription [K] 0.89
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.89
COG5421TransposaseMobilome: prophages, transposons [X] 0.89
COG4737Uncharacterized conserved proteinFunction unknown [S] 0.89
COG4251Bacteriophytochrome (light-regulated signal transduction histidine kinase)Signal transduction mechanisms [T] 0.89
COG4249Uncharacterized conserved protein, contains caspase domainGeneral function prediction only [R] 0.89
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.89
COG3293TransposaseMobilome: prophages, transposons [X] 0.89
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.89
COG2267Lysophospholipase, alpha-beta hydrolase superfamilyLipid transport and metabolism [I] 0.89
COG2059Chromate transport protein ChrAInorganic ion transport and metabolism [P] 0.89
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.89
COG1922UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF familyCell wall/membrane/envelope biogenesis [M] 0.89
COG1878Kynurenine formamidaseAmino acid transport and metabolism [E] 0.89
COG1484DNA replication protein DnaCReplication, recombination and repair [L] 0.89
COG1075Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase foldLipid transport and metabolism [I] 0.89
COG05962-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase foldCoenzyme transport and metabolism [H] 0.89
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.89


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.11 %
All OrganismsrootAll Organisms0.89 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300031708|Ga0310686_106667457All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae6348Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa23.21%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog14.29%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil10.71%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog9.82%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland8.93%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland4.46%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.68%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.68%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog2.68%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil2.68%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere2.68%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.79%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.79%
Freshwater Lake HypolimnionEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion0.89%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.89%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.89%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.89%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.89%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.89%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.89%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300009175Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaGEnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014160Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaGEnvironmentalOpen in IMG/M
3300014161Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaGEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300019268Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300023101Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14EnvironmentalOpen in IMG/M
3300024295Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5EnvironmentalOpen in IMG/M
3300025446Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028747Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028795Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1EnvironmentalOpen in IMG/M
3300028806Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028874Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030051Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030057Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030519Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031240Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaGHost-AssociatedOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031261Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300034065Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5EnvironmentalOpen in IMG/M
3300034282Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062389_10171967613300004092Bog Forest SoilSGVAPLVAALAPPPGTARAGELAPSLGRRNTGVDARQRVRALVAQTEAFLHDPNTLPHYPLWDMNRGYGP*
Ga0070683_10157649623300005329Corn RhizosphereEALFPKIGEGLVPPPGVVRAGGEAPALGRRTMAAAALQRRRDIVAQNQNFVRDPAGCLPHYPIWDMNRGFGP*
Ga0070741_1016109523300005529Surface SoilIDRLLISEGLVPPHGIARAGEQSPALGRRDVGAAARKRMHDLVAQSEMFVRDPAGSLPYYPMWDMNRGFGP*
Ga0068855_10030748213300005563Corn RhizosphereACGELRELLEALFPKIGEGLVPPPGVVRAGGEAPALGRRTMAAAVLQRRRNIVAQNQNFVRDPAGCLPHYPIWDMNRGFGP*
Ga0066789_1028466023300005994SoilSEGLVPAEGTVRAAEQAPALGCQDIGAAARQRMRDLVAQTEMFLREPARTLPHYPLWDMNRGFGP*
Ga0070765_10085083623300006176SoilGEGFVPPEGTVRSGTQAPALGRRDVGAAAKQRMRDRVAQTALFLRDPVGALPHYPLWDMNRGFGP*
Ga0068871_10153673623300006358Miscanthus RhizosphereLLSEGLIPAEGTVRAGRQAPALGRRDIGTAARRRMRDLVAQTEMFLGDPGILPHYPLWDINRGFGP*
Ga0073936_1000936773300009175Freshwater Lake HypolimnionLLPPGTVRAGEIAPALGRQLVGSAARQRAHDIVAQNEAFVADPAAALPHYPLWDMNRGFGP*
Ga0116108_104415613300009519PeatlandGLVPPPGTARAGDQTPALGRRNVGPAARQRMRDLVAQSEAFVRDPAGALPHYPSWDMNRGFGP*
Ga0116221_152122213300009523Peatlands SoilELSDGLKPPPGTTRAGAQTPALGRVDVGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDTNRGFGP*
Ga0116105_100542013300009624PeatlandLLKRSELSEGLKPPPGTTRAGAQTPALGRVDIGPAARQRQRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP*
Ga0116105_122945713300009624PeatlandRSELSEGLKPPPGTTRAGAQTPALGRVDIGPAARQRQWDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP*
Ga0116135_103185313300009665PeatlandTAGIELSDGLKPPPGTTRAGAQTPALGRVDVGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP*
Ga0134128_1217243923300010373Terrestrial SoilAEGTIRAGTLAPALGRRDIGTAARQRMRDLVAQTEMFRRDPGTLPHYPLWDINRGFGP*
Ga0136449_10079213923300010379Peatlands SoilTTLLKRGELSDGLKPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVMQTDAFVRDPAGTLPHYPLWDMNRGFGP*
Ga0134127_1289945823300010399Terrestrial SoilALFPKIGEGLVPPPGVVRAGGEAPALGRRTMAAAALQRRRDIVAQNQNFVRDPAGCLPHYPIWDMNRGFGP*
Ga0157372_1032799213300013307Corn RhizosphereGLVPPPGVVRAGGEAPALGRRTMAAAALQRRRDIVAQNQNFVRDPAGCLPHYPIWDMNRGFGP*
Ga0181521_1015835813300014158BogETLLSEGLVAPQGTARAGDQAPALGRRDVGVAARQRMRDLVAQTADFVRDPAGALPHYPLWDMNRGFGP*
Ga0181517_1006879413300014160BogTVRAGTEVPALGRREAGAAARQRMSQLVAQSKAFQRDPAGALPHYPLWDMNRGFGP*
Ga0181529_1048172813300014161BogSLFNQVEDGQPLLSAGLVPLPGVPRAGGEIPALGRKTIGPAARRRIRDLVAQTKAFVIDPANALPHYPLWDMNRGFGP*
Ga0181534_1044172113300014168BogALLKRGELSDGLKPPPGTTRAGSQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGV*
Ga0181537_1020534713300014201BogKPPPGTTRAGAQTPALGRVDVGPAARQRSRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFSL*
Ga0182012_1019707023300014499BogPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGSLPHYPLWDINRGFGP*
Ga0182012_1070258523300014499BogLLKRGELSDGLKPPAGTIRAGAQAPALGRFDIGPAARQRRRDLVIQTEAFVRNPAGTLPHYPLWDMNRGFGP*
Ga0181525_1004847533300014654BogSLTTLLERGELSDGLKPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP*
Ga0181525_1008236913300014654BogKPPPGTTRAGAQTPALGRVDVGPAARQRRRDLVIQTETFVRDPAGTLPHYPLWDMNRGFGP*
Ga0181516_1011161223300014655BogLLKRGDLSDGLKPPPGTTRAGAQTPALGRVDIGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP*
Ga0181522_1062876823300014657BogESLTTLLKRGELSEGLKPPPGTTRAGAQTPALGRVDIGPAARQRKRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP*
Ga0181522_1079634413300014657BogGRPLIAEGLIPPPGTVRAGGIAPSLGRRTVGAAARQRARDMLAQTEAFLDNPAAALPHYPLYDMNRGFGP*
Ga0181519_1015180913300014658BogNLLLRGELSEGLKPPPGTIRAGTQTPALGRFSIGPAARQRKRDLVIQTEAFVRNPAGALPHYPLWDMNRGFGP*
Ga0182030_1123511113300014838BogTVRAGDHAPALGRRDVGAAARQRMRDLVAQTEAFIRDPAGTLPHFPLWDMNRGFGP*
Ga0181505_1015215213300016750PeatlandIRESLTTLLKRGELSDGLKPPPGTTRAGSQTPALGRVDIGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0187847_1011842223300017948PeatlandLFVPRVGSRLLLSEGLVPGEGTVRSGKQAPALGRREAGAAARQRMRDLVAQSKMFQRDPAGTLPHYPLWDMNRGFGP
Ga0187783_1003818413300017970Tropical PeatlandSEGLVPPERTARAGDLTPALGRREPGPAARQRMRDLIAQTEEFIRDPAGTLPHYPVSDINRGFGF
Ga0187875_1061108913300018035PeatlandGLFDRRSSGGPLLSEGMIPPPGTVRAGDQAPALGRRDVGAAARQRMRDLVAQTEAFVSDPAGTLPHFPLWDMNRGFGP
Ga0187875_1077127513300018035PeatlandARAGDQSPALGRRDVGAAARQRMRDLVAQTAEFVRDPAGALPHYPLWDMNRGFGP
Ga0187855_1050456313300018038PeatlandPGTTRAGAQTPALGRFDIGPAAVQRKRDLVMQTEAFVRDPVGALPHYPLWDMNRGFGP
Ga0187862_1062324113300018040PeatlandTRAGAQTPALGRFDIGPAAVQRKRDLVMQTEAFVRDPVGALPHYPLWDMNRGFGP
Ga0187871_1017112523300018042PeatlandRESLTTLLKRGELSDGLKPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0187890_1016204623300018044PeatlandDGLKPPPGTTRAGAQTPALGRADIGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0187890_1059009513300018044PeatlandPPRGTVRAGNQAPALGRRDVGPAARQRMRDLAAQTDAFIRNPAEALPHYPAWDMNRGFGP
Ga0187784_1142220123300018062Tropical PeatlandISEGLVPPEGTVRAGDLAPALGRREPGPAARQRMRDLIAQTGEFIRDPAGTLPHYPVSDINRGFGF
Ga0187769_1008799653300018086Tropical PeatlandGDRLLLSEGLVPAAGTVRAGTQTPALGRRDVGAAARQRMRDLVAQTEMFVRDPINALPHYPLWDMNRGFGP
Ga0181514_143048823300019268PeatlandLFSEGLIPPQGVARAGEQSPALGRRAVGAAARQRMRDLVAQTNEFVRDPAGALPHYPLWDMNRGFGP
Ga0210402_1182964023300021478SoilDHSLLSEGLVPPPGTVRAGDAAPALGRQDLGAAAKQRARDLVAQTQAFLADPAAALPHFPQWDMNRGFGP
Ga0224557_104378713300023101SoilQGLVPPPGTARAGAQAPSLGRWDVGVAARQRMRDLVAQSEAFVRDPAGTLPHYPSWDMNRGFGP
Ga0224556_1000807103300024295SoilRSELSEGLKPPPSTTRAGAQTPALGRVDIGPAARQRQRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0208038_102407123300025446PeatlandVPPPGTARAGDQTPALGRRNVGPAARQRMRDLVAQSEAFVRDPAGALPHYPSWDMNRGFG
Ga0207661_1176335013300025944Corn RhizosphereEALFPKIGEGLVPPPGVVRAGGEAPALGRRTMAAAALQRRRDIVAQNQNFVRDPAGCLPHYPIWDMNRGFGP
Ga0302219_1023113113300028747PalsaEIRESLTTLLKRGELSEGLKPPPGTTRAGAQTPALGRFTVGPAARQRKRDLVSQTEAFVRDPAGALPHYPLWDINRGFGP
Ga0302227_1028209423300028795PalsaTTRAGAQTPALGRVDIGPAALQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0302221_1027650013300028806PalsaGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0302155_1017945423300028874BogGLKPPPGTTRAGTQTAALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0308309_1047155623300028906SoilRIAEGFVPPEGTARSGTQAPALGRRDVGAAAKQRLRDRVAQTALFLRDPVGALPHYPLWDMNRGFGP
Ga0311327_1058214323300029883BogLTTLLKKGELSDGLKPPPGTTRAGAQTPALGRIDIGPAARQRRRDLVIQTEAFVRDPASTLAHYPLWDMNRGFGP
Ga0311329_1095295513300029907BogGSLTALLQRGELSEGLKPPPGTTRAGAQTPALGRFDVGPAALRRKRDLVAQTEAFMRDPAGALPHYPLWDMNRGFGP
Ga0311361_1123038813300029911BogTTLLKRGELSDGLKAPPGTTRAGAQTPALGRVDIGPAARQRKRDLVIQTKEFVRDPAGTLPHYPLWDMNRGFGP
Ga0311362_1017925113300029913BogQGLFDQHDEDGPLLAKGLVPAPGTVRSGDLAPALGRRSIGAAARQRMRDLVAQTEAFISDPAGALPHYPLWDMNRGFGP
Ga0311358_1085079623300029915BogKGLVPAPGTVRSGDLAPALGRRSIGAAARQRMRDLVAQTEAFISDPAGALPHYPLWDMNRGFGP
Ga0311358_1100252513300029915BogSEGLKPPPGTTRAGAQTPALGRFDVGPAALRRKRDLVAQTEAFMRDPAGALPHYPLWDMNRGFGP
Ga0311363_1124435413300029922FenDQHGEDGPRLSEGLVPALGTVRAGHAGPALGRRDIGAAARKRARDLVAQTREFVSDPAGSLPHYPLWDMNRGFGP
Ga0311340_1114589523300029943PalsaLGRGELSDGLRPPPGTARAGAQTPALGRIDIGPAARQRKRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0311352_1140187613300029944PalsaPPGTARAGAQTPALGRVDIGPAARQRKRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0311371_1022688953300029951PalsaLKRGELSDGLKPPPGTTRAGAQTPALDRVDIGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDVNRGFGP
Ga0311331_1112648713300029954BogGLRLAVGLAPPPRVVRAGGEAPSLGRRKVAVAARRRARDLVVQTKEFVRDPAAALPHFPLWDMNRGFGP
Ga0311342_1018765043300029955BogLGTTRAGTQTPGLGRLDVGPAARQRRRDLVIQTEAFVRDPAGNLPHYPLWDMNRGFGP
Ga0311339_1074330823300029999PalsaPPPGTTRAGAQTPALGRLDIGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0311338_1118666413300030007PalsaGAQTPALGRFAIGPAARQRKRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0311338_1133309123300030007PalsaLTALLKRGELSDGLKPPPGTTRAGVQTPALGRVEIGSAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0311338_1170035813300030007PalsaPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0311344_1108831113300030020BogPRVVRAGGEAPSLGRRKVAVAARRRARDLVVQTKEFVRDPAAALPHFPLWDMNRGFGP
Ga0302195_1037156423300030051BogDGPRLAEGLVPAPGTVRAGHAGPALGRRDIGAAARKRARDLVAQTREFVSDPAGSLPHYPLWDMNRGFGP
Ga0302195_1044881923300030051BogSLTTLLKRGELSDGLKPPAGTTRAGAQTPALGRVDIGPAARQRKRDLVIQSEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0302177_1061762613300030053PalsaRDGDRSRLSAGLVPPAGVVRAGGAVPALGRRDVGAAARKRARDLVAQSEAFVRDPLGSLPHFPLWDMNRGYGP
Ga0302176_1006825613300030057PalsaPPGTARAGAQTPALGRIDIGPAARQRKRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0311353_1071325223300030399PalsaKPPPGTTRAGAQTPALGRVDIGPAALQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFG
Ga0311370_1147690313300030503PalsaSGGVPLVSEGLVPPAGTVRAGDQAPALGRRDVGVAARQRMRDLVAQTEAFVADPAGRLPHHPLWDMNRGFGP
Ga0302193_1027889713300030519BogPGTTRAGTQTPALGRVDIGPAARRRRRDLVIQTEAFVRDPAGTLPHYPLWDINRGFGP
Ga0311372_1114520313300030520PalsaELSDGLKPPPGTTRAGAQTPALGRVDVGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0311357_1113153513300030524PalsaSDGLKPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0311357_1154950623300030524PalsaRGELSNGLKPPHGTTRAGTQTPALGRLDVGPAARQRRRDLVIQTEAFVDDPAGNLPHYPLWDMNRGFGP
Ga0311355_1055690733300030580PalsaGELSDGLKPPPGTTRAGAQTPALGRVDIGPAALQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0311356_1112947423300030617PalsaAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0302325_1058134613300031234PalsaSDGLKPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPVWDMNRGFGP
Ga0302324_10060413533300031236PalsaPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPVWDMNRGFGP
Ga0302324_10102565113300031236PalsaTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0302324_10250085813300031236PalsaLTTLLKRGELSDGLKPPPGTTRAGAQTPALGRVDVGPAARQRKRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0265320_1017618613300031240RhizosphereLVAEGLIPPPGVARSGSPAPALGRQDVGAAARQRIRDLVIQTEAFVQDPAGTLPHYPLWDMNRGFGP
Ga0265340_1006954713300031247RhizosphereISEGLIPPGGAVRAGDQAPALGRRDVGAAARQRMRDLVAQTEAFARDPAARLPHYPAWDMNRGFRP
Ga0302140_1012700053300031261BogLFEQRDAEGLRLAVGLAPPPRVVRAGGEAPSLGRRKVAVAARRRARDLVVQTKEFVRDPAAALPHFPLWDMNRGFGP
Ga0302140_1013872813300031261BogPAPGTVRSGDLAPALGRRSIGAAARQRMRDLVAQTEAFISDPAGALPHYPLWDMNRGFGP
Ga0302320_1026284013300031524BogTVRAGDQAPALGRRNVGPAARQRMRDLLAQTEAFVRDPAGALPHYPAWDMNRGFGP
Ga0302326_1064272513300031525PalsaEGLEPPPGTTRAGAQTPALGRVDVGPAARQRRRDLIIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0302326_1086610013300031525PalsaDGLKPPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPVWDMNRGFGP
Ga0302326_1130204433300031525PalsaPPGTTRAGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0310686_10666745713300031708SoilTTLLKRGELSDGLKPPPGTTRAGAQTPALGRLDIGSAARQRRRDLVIQTEAFVRDPAGNLPYYPLWDMNRGFGP
Ga0265314_1050445213300031711RhizosphereFDRHSGGTPLISEGLIPPGGAVRAGDQAPALGRRDVGAAARQRMRDLVAQTEAFARDPAARLPHYPAWDMNRGFRP
Ga0311301_1116508423300032160Peatlands SoilLHGLIDRRQGGRSLLSEGLVPPPGVARSGASVPALGRKDLGPAARKRMRDLVVQTQNFIRDPAGTLPHYPLWDMNRGFGP
Ga0335078_1169578623300032805SoilRGTVRAGDQAPALGRRNVGSAARQRMRDLVAQTEAFVRDPAGTLPHHPAWDMNRGFGV
Ga0335080_1120722013300032828SoilGLFERLSEGLVPPLGTVRAGDQAPALGRRDVGSAARQRRRDLVAQTEAFVRDPAGTLPHYPSWDMNRGFGP
Ga0335081_1190495613300032892SoilLKPPPGTTRAGAPTPALGRIAIGPAARQRKRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0335081_1202591213300032892SoilLTTLLKRGELSESLKPPPGTTRAGAQTPALGRFDIGPAARQRKRDLVIQTEAFVHDPAGALPHYPLWDMNRGFGP
Ga0335074_1030724513300032895SoilKRGELSEGLKPPPGTTRAGAQTPALGRFDIGPAARQRKRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0335074_1035441633300032895SoilPPPGTARAGAQTPALGRVDIGPAARQRKRDLVVQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0335074_1036666013300032895SoilSLTTLLKRGELSDGLKPPPGTTRAGAQTPALGRIDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0335074_1119192613300032895SoilMFTDPDGKPPPIVAGLILPPGVARAGGPAPSLGRREVGPAARKRMRDLVAQTESFVRDPARALPHFPLWDMNRGFGP
Ga0335072_1003514313300032898SoilEVRESLTALLKRGELSDGLRPPTGTARAGAQAPALGRADIGAAARQRMRDLVIQTEAFVRDPAGALPHYPLWDMNRGFGP
Ga0335083_1062707013300032954SoilRAGGQTPALGRRDVAAAARQRMRDEVAQTENFLRDPAATLPHYPLWDMNRGFGP
Ga0335083_1074731113300032954SoilGDRLLLSEGLVPQEGTVRAGEQVPALGRRDVGVAARQRRRDLVAQTEMFLRDPAGSLPHYPFWDMNRGFGP
Ga0335073_1065523713300033134SoilGAQTPALGRVDIGPAARQRRRDLVIQTEAFVRDPAGTLPHYPLWDMNRGFGP
Ga0334827_138574_591_7643300034065SoilGTTRGGAQTPALGRVDIGPAARQRRKDLVTQTEAFVRDPAGNLPHYPLWDMNRGFGP
Ga0370492_0336699_337_5613300034282Untreated Peat SoilMRRSGDRLLLAEGLVPAKGTVRAGEPAPALGRRVIASAARQRIRDMVAQTKMFVRDPNALPHCPLWDMNRGFGP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.