Metagenome / Metatranscriptome Family F084447

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084447
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	68 residues
Representative Sequence	MNCQRCCEREEATYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGERKGNGEKSELELRDYRSELLP
Number of Associated Samples	90
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.36 %
% of genes near scaffold ends (potentially truncated)	19.64 %
% of genes from short scaffolds (< 2000 bps)	89.29 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.179 % of family members)
Environment Ontology (ENVO)	Unclassified (23.214 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.750 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.58% β-sheet: 14.58% Coil/Unstructured: 70.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00106	adh_short	6.25
PF00072	Response_reg	5.36
PF11737	DUF3300	1.79
PF00248	Aldo_ket_red	0.89
PF00196	GerE	0.89
PF00296	Bac_luciferase	0.89
PF13548	DUF4126	0.89
PF00988	CPSase_sm_chain	0.89
PF01914	MarC	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0505	Carbamoylphosphate synthase small subunit	Amino acid transport and metabolism [E]	1.79
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.89
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.57 %
Unclassified	root	N/A	46.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.57 %
Unclassified	root	N/A	46.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.57 %
Unclassified	root	N/A	46.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	35.71 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.79 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	35.71 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	35.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.43 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	35.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_3576522	Not Available	1505	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2114644	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10084800	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	675	Open in IMG/M
3300000955\|JGI1027J12803_100699742	Not Available	709	Open in IMG/M
3300002899\|JGIcombinedJ43975_10090316	Not Available	552	Open in IMG/M
3300003911\|JGI25405J52794_10043114	Not Available	957	Open in IMG/M
3300004281\|Ga0066397_10115371	Not Available	579	Open in IMG/M
3300005162\|Ga0066814_10049737	Not Available	687	Open in IMG/M
3300005169\|Ga0066810_10107702	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	625	Open in IMG/M
3300005178\|Ga0066688_10973120	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	519	Open in IMG/M
3300005289\|Ga0065704_10130939	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1604	Open in IMG/M
3300005289\|Ga0065704_10472472	Not Available	688	Open in IMG/M
3300005289\|Ga0065704_10613801	Not Available	589	Open in IMG/M
3300005294\|Ga0065705_10163386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1764	Open in IMG/M
3300005294\|Ga0065705_10239379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1238	Open in IMG/M
3300005294\|Ga0065705_11118953	Not Available	518	Open in IMG/M
3300005332\|Ga0066388_100966275	Not Available	1421	Open in IMG/M
3300005332\|Ga0066388_101652390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1131	Open in IMG/M
3300005332\|Ga0066388_107547851	Not Available	545	Open in IMG/M
3300005445\|Ga0070708_100103980	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2604	Open in IMG/M
3300005447\|Ga0066689_10842421	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300005536\|Ga0070697_100372371	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1236	Open in IMG/M
3300005554\|Ga0066661_10228878	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300005555\|Ga0066692_10563823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	719	Open in IMG/M
3300005557\|Ga0066704_10456611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	844	Open in IMG/M
3300005713\|Ga0066905_100285064	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1288	Open in IMG/M
3300005713\|Ga0066905_100563313	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300005713\|Ga0066905_102122667	Not Available	523	Open in IMG/M
3300005764\|Ga0066903_101253604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1381	Open in IMG/M
3300005764\|Ga0066903_102873039	Not Available	934	Open in IMG/M
3300005937\|Ga0081455_10020138	All Organisms → cellular organisms → Bacteria	6292	Open in IMG/M
3300005937\|Ga0081455_10356449	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300006049\|Ga0075417_10433761	Not Available	653	Open in IMG/M
3300006058\|Ga0075432_10295829	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	670	Open in IMG/M
3300006194\|Ga0075427_10011264	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1347	Open in IMG/M
3300006797\|Ga0066659_10128919	All Organisms → cellular organisms → Bacteria	1767	Open in IMG/M
3300006844\|Ga0075428_100549652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1234	Open in IMG/M
3300006845\|Ga0075421_101682000	Not Available	687	Open in IMG/M
3300006845\|Ga0075421_101963053	Not Available	625	Open in IMG/M
3300006852\|Ga0075433_10345194	Not Available	1316	Open in IMG/M
3300006853\|Ga0075420_100576242	Not Available	972	Open in IMG/M
3300006880\|Ga0075429_100283657	Not Available	1450	Open in IMG/M
3300006904\|Ga0075424_100501766	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1296	Open in IMG/M
3300007076\|Ga0075435_100607681	Not Available	948	Open in IMG/M
3300009012\|Ga0066710_101147964	Not Available	1202	Open in IMG/M
3300009094\|Ga0111539_12047225	Not Available	664	Open in IMG/M
3300009137\|Ga0066709_101605624	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	930	Open in IMG/M
3300009147\|Ga0114129_10245003	Not Available	2408	Open in IMG/M
3300009147\|Ga0114129_11724668	Not Available	764	Open in IMG/M
3300009157\|Ga0105092_10332865	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	859	Open in IMG/M
3300009610\|Ga0105340_1266022	Not Available	739	Open in IMG/M
3300009792\|Ga0126374_10953356	Not Available	669	Open in IMG/M
3300009792\|Ga0126374_11764872	Not Available	516	Open in IMG/M
3300010043\|Ga0126380_10203886	Not Available	1327	Open in IMG/M
3300010154\|Ga0127503_10449946	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1600	Open in IMG/M
3300010154\|Ga0127503_10571511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1178	Open in IMG/M
3300010362\|Ga0126377_10372407	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300010362\|Ga0126377_12080376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	644	Open in IMG/M
3300010362\|Ga0126377_12944886	Not Available	549	Open in IMG/M
3300012198\|Ga0137364_10071107	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2381	Open in IMG/M
3300012200\|Ga0137382_10039605	All Organisms → cellular organisms → Bacteria	2883	Open in IMG/M
3300012202\|Ga0137363_10212859	Not Available	1556	Open in IMG/M
3300012205\|Ga0137362_10757509	Not Available	833	Open in IMG/M
3300012211\|Ga0137377_11871418	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	518	Open in IMG/M
3300012350\|Ga0137372_10178172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1717	Open in IMG/M
3300012353\|Ga0137367_11088767	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300012358\|Ga0137368_10187355	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1485	Open in IMG/M
3300012361\|Ga0137360_10134244	Not Available	1941	Open in IMG/M
3300012390\|Ga0134054_1055241	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	879	Open in IMG/M
3300012410\|Ga0134060_1500083	Not Available	523	Open in IMG/M
3300012582\|Ga0137358_10109354	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300012582\|Ga0137358_10133908	Not Available	1686	Open in IMG/M
3300012917\|Ga0137395_10996322	Not Available	600	Open in IMG/M
3300012922\|Ga0137394_10120646	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2219	Open in IMG/M
3300012929\|Ga0137404_11485073	Not Available	627	Open in IMG/M
3300012930\|Ga0137407_10150530	Not Available	2055	Open in IMG/M
3300012951\|Ga0164300_10814181	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	580	Open in IMG/M
3300012971\|Ga0126369_10762753	Not Available	1048	Open in IMG/M
3300012989\|Ga0164305_10846914	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	763	Open in IMG/M
3300014879\|Ga0180062_1133937	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300015052\|Ga0137411_1343109	All Organisms → cellular organisms → Bacteria	2380	Open in IMG/M
3300015264\|Ga0137403_10592737	Not Available	974	Open in IMG/M
3300018031\|Ga0184634_10107775	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1222	Open in IMG/M
3300018052\|Ga0184638_1040149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1698	Open in IMG/M
3300018052\|Ga0184638_1144099	Not Available	862	Open in IMG/M
3300018053\|Ga0184626_10012474	All Organisms → cellular organisms → Bacteria	3350	Open in IMG/M
3300018053\|Ga0184626_10040628	Not Available	1931	Open in IMG/M
3300018054\|Ga0184621_10143814	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	858	Open in IMG/M
3300018081\|Ga0184625_10391718	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718	Open in IMG/M
3300018422\|Ga0190265_10580569	Not Available	1239	Open in IMG/M
3300018433\|Ga0066667_11642486	Not Available	574	Open in IMG/M
3300018469\|Ga0190270_12832775	Not Available	547	Open in IMG/M
3300025910\|Ga0207684_10445921	Not Available	1111	Open in IMG/M
3300025939\|Ga0207665_10090840	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300026285\|Ga0209438_1135060	Not Available	660	Open in IMG/M
3300027490\|Ga0209899_1063663	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300027533\|Ga0208185_1119151	Not Available	616	Open in IMG/M
3300027577\|Ga0209874_1077648	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	817	Open in IMG/M
3300027873\|Ga0209814_10026140	All Organisms → cellular organisms → Bacteria	2389	Open in IMG/M
3300027873\|Ga0209814_10160590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	965	Open in IMG/M
3300027957\|Ga0209857_1003884	All Organisms → cellular organisms → Bacteria	3226	Open in IMG/M
3300031469\|Ga0170819_13929329	Not Available	772	Open in IMG/M
3300031677\|Ga0307480_1002327	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1014	Open in IMG/M
3300031720\|Ga0307469_10719451	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	907	Open in IMG/M
3300031740\|Ga0307468_100191862	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300032174\|Ga0307470_10211017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1250	Open in IMG/M
3300032180\|Ga0307471_101461832	Not Available	842	Open in IMG/M
3300032180\|Ga0307471_101676097	Not Available	790	Open in IMG/M
3300032180\|Ga0307471_102672817	Not Available	633	Open in IMG/M
3300032205\|Ga0307472_100245241	Not Available	1400	Open in IMG/M
3300034115\|Ga0364945_0107879	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	818	Open in IMG/M
3300034354\|Ga0364943_0302854	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.46%
Host-Associated	Host-Associated	20.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.86%
Plants	Host-Associated → Plants	20.54%
Aquatic	Environmental → Aquatic	11.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.29%
Sediment	Environmental → Aquatic → Sediment	8.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.25%
Freshwater	Environmental → Aquatic → Freshwater	2.68%
Floodplain	Environmental → Terrestrial → Floodplain	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	11.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.57%
Sand	Environmental → Terrestrial → Soil → Sand	2.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.57%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.18%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.14%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.25%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	3.57%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.68%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.68%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.68%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031677	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0297.00000170	2162886007	Switchgrass Rhizosphere	MKCQRCSGREEASYRVRSDVIDMKVCAACADEARRLRIAVDVLGGRERKGNGEKSQLEFRDYRSELLP
ICChiseqgaiiDRAFT_21146442	3300000033	Soil	MKCQRCCGREEAVYRVRSDVIDMKVCAACADEARRLXIAVEVLXGXERKGNREKS
AF_2010_repII_A001DRAFT_100848001	3300000793	Forest Soil	MSCQRCCIYEEARYRVRSDLIDMKVCGACAAEASRLGIAVEVLGGGGRKGDGEKKAVKLMDYPIRAPTL
JGI1027J12803_1006997422	3300000955	Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACANEARRLGIVVEVLSGEERKGNGGKSKFELRDYRSELLP*
JGIcombinedJ43975_100903161	3300002899	Soil	MKCQRCSGREEASYRVRSDVIDMKVCAACADEARRLRIAVDVLGGRERKGNGEKSQLEFRDYRSELLP*
JGI25405J52794_100431141	3300003911	Tabebuia Heterophylla Rhizosphere	XSGQEATYRVRSDVIDMEVCAACADEARRLGLAVEVLGGEERKGNREKSELRDYRSEFTPYCGR*
Ga0066397_101153711	3300004281	Tropical Forest Soil	MKCERCRGREEAAYRVRSDVIDMKVCGACAAEARRLGIGVEVLGGAERKGNGEKSELELRDYRSELLP*
Ga0066814_100497372	3300005162	Soil	MKCERCCGRQEAVYRVRSDVIDMKVCAACADEASRLGIAVEVLGGGERKGNGEKSKFELRDYRSELLP*
Ga0066810_101077022	3300005169	Soil	MKCERCCGRQEAVYRVRSDVIDMKVCGSCAAEATRLGITVEVLVGGGRKGNGEKSEFELRDYRSELLP*
Ga0066688_109731201	3300005178	Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACADEARRLGIAVEVLGGEERKGKGEKSE*
Ga0065704_101309393	3300005289	Switchgrass Rhizosphere	MKCQRCCGHEEATYRVRSDVIDMKVCAACADEARRLGIAVEVLDGEERKGNGEKSKLEHRDYRSELLP*
Ga0065704_104724721	3300005289	Switchgrass Rhizosphere	MQCQRCCGHEEATCRVRSDVIDMKVCVACADEARRLGIAVEILGGQEKKGNVEKSKFELQDYRSELLP*
Ga0065704_106138011	3300005289	Switchgrass Rhizosphere	MQCQRCCGHEEATCRVRSDVIDMKVCAACAAEARRLGIVVEVLGGEQRKGNGEKSKFELQDYRSELLP*
Ga0065705_101633862	3300005294	Switchgrass Rhizosphere	MKCQRCSGREEASYRVRSDVIDMKVCAACADEARRLRIAVDVLGGQERKGNGEKSQLEFRDYRSELLP*
Ga0065705_102393792	3300005294	Switchgrass Rhizosphere	MKCQRCCGHEEATYRVRSDVIDMKVCAACADEARRLGIAVEVLDGEERKGNGEKSKHEHRDYRSELLP*
Ga0065705_111189532	3300005294	Switchgrass Rhizosphere	MKCERCCGREEAAYRVRSDVIDMKVCGACANEARRLGIAVEVLGGGERKGNGEKSELEAWDYRSELLP*
Ga0066388_1009662752	3300005332	Tropical Forest Soil	RGREEAAYRVRSDVIDMKVCGACAAEARRLGIGVEVLGGAERKGNGEKSELELRDYRSELLP*
Ga0066388_1016523902	3300005332	Tropical Forest Soil	MKCQRCCRDDASYRVWSDVIDMKVCAVCVDEGRRLGIAVEVLGGAGRKDDEEKKDVKLVDYRSELLSDCGR*
Ga0066388_1075478511	3300005332	Tropical Forest Soil	CLSGQEATYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGGRNNNGEKSELERDQRTELLPDCGR*
Ga0070708_1001039802	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKCQRCCGHEEATYRVRSDVIDMKVCAACANEARRLGIVVEVLGGEERKGNGEKSKFELRDYRSELLP*
Ga0066689_108424212	3300005447	Soil	MKCQRGCGREEATYRVRSDVIDMKVCAACAAEARRLGIAVEVLSGEERKGNGEKSKFELRDYRSELLP*
Ga0070697_1003723712	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKCQRCCGHEEATYRVRSDVIDMKVCAACANEARRLGIVVEVLSGEERKGNGEKSKFELRDYRSELLP*
Ga0066661_102288783	3300005554	Soil	MYKGGNKLTMKCQRGCGREEATYRVRSDVIDMKVCAACAAEARRLGIAVEVLGGGERKGNGEKSELEVRDYRSELLP*
Ga0066692_105638232	3300005555	Soil	MKCQRGCGREEATYRVRSDVIDMKVCAACAAEARRLGIAVEVLGGEERKGNGEKSEIELRDYRSELLP*
Ga0066704_104566112	3300005557	Soil	MKCQRGCGREEATYRVRSDVIDMKVCAACADEARRLGIAVEVLSGEERKGNGEKSKFELRDYRSELLP*
Ga0066905_1002850641	3300005713	Tropical Forest Soil	MKCERCRGRQEAVYRVRSDVIDMKVCGACAAEARRLGIGVEVLGGGERKGNGEKSELELRDYRSELLP*
Ga0066905_1005633132	3300005713	Tropical Forest Soil	MKCQRCCRDDASYRVWSDVIDMKVCAACAAEASGLGIAVEALGGGRKEDGEKKDVKLMDNPSELLLC*
Ga0066905_1021226671	3300005713	Tropical Forest Soil	MKCQRCCGREEASYRVRSDVIDMKVCAACAAEARRLGIAVEVLGGRERKGDREKSQLEFRDYRSELLP*
Ga0066903_1012536042	3300005764	Tropical Forest Soil	MKCQRCLSGQEATYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGGRNNNGEKSELERDQRTELLPDCGR*
Ga0066903_1028730391	3300005764	Tropical Forest Soil	MKCERCRGREEAAYRVRSDVIDMKVCGACAAEARRLGIGVEVLGGAERKGNGEKSELELRDCRSELLP*
Ga0081455_100201387	3300005937	Tabebuia Heterophylla Rhizosphere	MKCQRCMSGQEATYRVRSDVIDMEVCAACADEARRLGLAVEVLGGEERKGNREKSELRDYRSEFTPYCGR*
Ga0081455_103564491	3300005937	Tabebuia Heterophylla Rhizosphere	MKCQRCCGREEASYRVRSDVIDMKVCAACAAEARRLGIAVEVLGGGERKGNREESELELRDYRSELLP*
Ga0075417_104337612	3300006049	Populus Rhizosphere	MKCQRCCGREEAVYRVRSDVIDMKVCAACADEARRLRIAVEVLGGEERKGNREKSELEFRDYRSELLP*
Ga0075432_102958291	3300006058	Populus Rhizosphere	MKCQRCCGREEAVYRVRSDVIDMKVCAACADEARRLRIAVEVLCGEERKGNREKSELEL
Ga0075427_100112641	3300006194	Populus Rhizosphere	MKCQRCCGREEAAYRVRSDIIDMKVCAACADEARRLGIAVEVLGGGEKKGNGEKSELERRDDRSEVLLYCGR*
Ga0066659_101289194	3300006797	Soil	MKCQRGCGREEATYRVRSDVIDMKVCAACAAEARRLGIAVEVLGGGERKGNGEKSELEVRDYRSELLP*
Ga0075428_1005496523	3300006844	Populus Rhizosphere	KCQRCSGREEASYRVRSDVIDMKVCAACADEARRLRIAVDVLGGQERKGNGEKSQLEFRDYRSELLP*
Ga0075421_1016820002	3300006845	Populus Rhizosphere	MKCQRCCWSEDATYRVHSDVIDMKVCAACAEEARGLGITVELLDAGAGKGDAGKRELELRDYRSELSPYCR*
Ga0075421_1019630531	3300006845	Populus Rhizosphere	MKCQRCCGREEAAYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGERKGNGEKSELERRDDRSEVLLYCGR*
Ga0075433_103451942	3300006852	Populus Rhizosphere	MKCQRCCGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEILVGGGRKGNGEKSEFELRDYRSELLL*
Ga0075420_1005762422	3300006853	Populus Rhizosphere	MKCQRCCGREEAAYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGEKKGNGEKSELERRDDRSEVLLYCGR*
Ga0075429_1002836571	3300006880	Populus Rhizosphere	MKCQRCCGREEAVYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGERKGNGEKSELERRDDRSEVLLYCGR*
Ga0075424_1005017661	3300006904	Populus Rhizosphere	MKCQRCCGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEILVGGGRKGNGEKSEFELRDYRSE
Ga0075435_1006076812	3300007076	Populus Rhizosphere	MKCQRCCGREEAVYRVRSDVIDMKVCAACADEARRLRIAVEVLGGEERKSNREKSELEFRDYRSELLP*
Ga0066710_1011479641	3300009012	Grasslands Soil	MKCHRCSSGEAAYRVHTDAIDMKVCAACAAEARRLGIAVEVLIGGEGKGNGGKGESKLQDYRPELLPCCRQ
Ga0111539_120472251	3300009094	Populus Rhizosphere	AMKCQRCCGREEAVYRVRSDVIDMKVCAACADEARRLRIAVEVLGGEERKGNREKSELELRDYRSELLP*
Ga0066709_1016056242	3300009137	Grasslands Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACAAEAGRLGIVVEVLSGEQRKGNGEKSKFELRDYRSELLP*
Ga0114129_102450034	3300009147	Populus Rhizosphere	MKCQRCCWSEDATYRVHSDVIDMKVCAACAEEARGLGITVELLNAGAGEGDAGKRELELRDYRSELSPYCR*
Ga0114129_117246681	3300009147	Populus Rhizosphere	MKCQRCCGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEVLVGGGRKGNGEKSEFELRDYRSELLL*
Ga0105092_103328652	3300009157	Freshwater Sediment	MKCERCCRREEAAYRVRSDVIDMKVCGSCANEATRLGIAVEVLVGGGRKRNGEKSELELRDYRSELLPDCAR*
Ga0105340_12660221	3300009610	Soil	KCQRCCGREEASYRVRSDVIDMKVCGSCADEARRLGIAVEVLVGGGRRGNGEKSELELRDYRSELLP*
Ga0126374_109533562	3300009792	Tropical Forest Soil	YRVRSDVIDMKVCGACAAEARRLGIGVEVLGGAERKGNGEKSELELRDYRSELLP*
Ga0126374_117648721	3300009792	Tropical Forest Soil	MKCQRCLSGQEATCRVRSDVIDMKVCAACADEARRLGIAVEVLGGGGRNNNGEKSELERDQRTELLPDCGR*
Ga0126380_102038862	3300010043	Tropical Forest Soil	MKCERCRGREEAAYRVRSDVIDMKVCGACAAEARRLGIGVEVLGGGERKGNGEKSELELRDYRSELLP*
Ga0127503_104499462	3300010154	Soil	MKCQRCCGREESTYRVRSDVIDMKVCGSCAAEATRLGITVEVLVGGGRKGNGEKSEFELRDYRSELLL*
Ga0127503_105715113	3300010154	Soil	MNCQRCCGREEATYRVRSDVIDMIVCAACAYEAMRLGIAVEVLGGGERKGNGEKSELRNYRSELLP*
Ga0126377_103724071	3300010362	Tropical Forest Soil	MKCERCRGREEAAYRVRSDVIDMKVCGACAAEARRLGIGVEVLGGGERKGNGEKSKLELRDYRSGLLP*
Ga0126377_120803762	3300010362	Tropical Forest Soil	MKCQRCCRDDASYRVWSDVIDMKVCAACAAEASGLGIAVEALGGGRKDDGEKKDVKLMDNPSELLLY*
Ga0126377_129448861	3300010362	Tropical Forest Soil	KRRLAMKCQRYCRHEEASYRVWSDVIDMKVCAACAAEASRLGIAVEVFGGGGRKGDGEKKDVKLMDYPSELLPC*
Ga0137364_100711073	3300012198	Vadose Zone Soil	MKCQRCCWSEDATYRVRSDIINMKVCAACADEARGLGITVELLNAGAGKGDAGKRELELRDYRSELSPYCR*
Ga0137382_100396053	3300012200	Vadose Zone Soil	MKCQRCCWSEDATYRVRSDIIDMKVCAACADEARGLGITVELLNAGAGKGDAGKRELELRDYRSELSPYCR*
Ga0137363_102128591	3300012202	Vadose Zone Soil	MKCQRGCGREEATYRVRSDVIDMKVCAACAAEARRLGIAVEVLGGEERKGKGEKSELELRDYRSELLP*
Ga0137362_107575091	3300012205	Vadose Zone Soil	CQRCCGHEEATYRVRSDVIDMKVCAACANEARRLGIVVEVLSGEERKGNGEKSKFELRDYRSELLP*
Ga0137377_118714181	3300012211	Vadose Zone Soil	MKCQRCCGREEATVIDMKVCAACADEARRLGITAEVLYGGERKGNEEKSELELRD
Ga0137372_101781723	3300012350	Vadose Zone Soil	MKCERCCGREEAVYRVRSDVIDMKVCAACADEARRLGITVEVLYGGERKGNEEKSELELRDYRSELLP*
Ga0137367_110887672	3300012353	Vadose Zone Soil	MKCERCCGREEAVYRVRSDVIDMKVCAACADEARRLGIAVEVLDGEERKGNGEKSELEHRDYRSE
Ga0137368_101873551	3300012358	Vadose Zone Soil	MKCERCCGREEAVYRVRSDVIDMKVCAACADEARRLGITVEVLDGGERKGNEEKSELELRDYRSELLP*
Ga0137360_101342442	3300012361	Vadose Zone Soil	MYKGGNKLTMKCQRGCGREEATYRVRSDVIDMKVCAACAAEARRLGIAVEVLGGGERKGNGEKSELELRDYRSELLP*
Ga0134054_10552412	3300012390	Grasslands Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACAAEAGRLGIVVEVLSGEQRKGHGEKSKFELRDYRSELLP*
Ga0134060_15000831	3300012410	Grasslands Soil	MKCQRCSGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEVLVGGGRKGNGEKSEFELRDYRSELLL*
Ga0137358_101093542	3300012582	Vadose Zone Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACADEARRLGIAVEVLSGEERKGNGEKSKFELRDYRSELLP*
Ga0137358_101339082	3300012582	Vadose Zone Soil	MKCQRCCWSEDATYRVRSDIIDMKVCAACADEARGLGITVELLDAGAGKGDAGKRELELRDYRSELSPYCH*
Ga0137395_109963221	3300012917	Vadose Zone Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACANETRRLGIVVEVLSGEERKGNGEKS*
Ga0137394_101206464	3300012922	Vadose Zone Soil	MECQRCWSGAYAAYRVRSDVIDMKVCAACAGEARGLGITVEFLDPGAGKGDAGKSELELRDYRSELSPYCH*
Ga0137404_114850731	3300012929	Vadose Zone Soil	MKCQRCCGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEVLVGGGRKGNGEKSEFEIRDYRSELLL*
Ga0137407_101505303	3300012930	Vadose Zone Soil	MKCQRCCGREEATVIDMKVCAACADEARRLGIAVEVLDGGGRRGNREKSELELRDYRSELLP*
Ga0164300_108141811	3300012951	Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACANEARRLGIVVEVLGGEERKCNGEKSKFELRDYRSDLLP*
Ga0126369_107627531	3300012971	Tropical Forest Soil	MKCERCRGREEAAYRVRSDVIDMKVCGACAAEARRLGIGVEVLGGGERKGNREKSELELRDYRSELLP*
Ga0164305_108469142	3300012989	Soil	MKCQRCCGHEESRYRVRSDVIDMKVCAACANEARRLGIVVEVLGGEERKGNGEKSKFDLRDYRSELLP*
Ga0180062_11339371	3300014879	Soil	MKCQRCCGCEEVTYRVRSDVIDTKVCAACAEEARSLGIAVEVLGGREKSERKLRDYRSELLP*
Ga0137411_13431093	3300015052	Vadose Zone Soil	MKCQQCCGREEATYRVRSDVIDMKVCAACADEARRLGIAVEVLGGEERKGKGEKSE*
Ga0137403_105927372	3300015264	Vadose Zone Soil	MKCQRCSGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEVLVGGGRKGNGEKSEFEIRDYRSELLL*
Ga0184634_101077752	3300018031	Groundwater Sediment	MNCQRCYEREEATYRVRSDVIDMKVCAACAYEATRLGITVEVLGGGGRKGNGEKRELELRDYRSELLP
Ga0184638_10401493	3300018052	Groundwater Sediment	MNCQRCCEREEATYRVRSDVIDMKVCAACADEARRLGLAVEVLSTGGRKGNGEKSEPELRHYRSELLPYCGSEDDKTPLLLK
Ga0184638_11440991	3300018052	Groundwater Sediment	MNCQRCYEREEVAYRVRSDVIDMKVCAACAYEATRLGITVEVLGGGERKGNEKRELELRDYRSELLP
Ga0184626_100124745	3300018053	Groundwater Sediment	MNCQRCSRGEEASYRVRSDLIDMKVCAACADEARRLGLAVEVLSTGGRKGNGEKSEPELRHYRSELLPYCGSEDDKTPLLLK
Ga0184626_100406284	3300018053	Groundwater Sediment	MNCQRCCEREEATYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGERKGNGEKSELELRDYRSELLP
Ga0184621_101438141	3300018054	Groundwater Sediment	MNCQRCYEREEATYRVRSDVIDMKVCAACAYEATRLGITVEVLGGGERKGNEKRELELRD
Ga0184625_103917181	3300018081	Groundwater Sediment	MKCQRCCGREEANYRVRSDVIDMKVCAACADEARRLRIAVEVLGGRGRKGNGEKSELELRDYRSELLP
Ga0190265_105805691	3300018422	Soil	MNCQRCCRREEASYRVRSDLIDMKVCAACADEAGRLGLAVEVLGAGGRKGNGEKSEPELRDYRPELLPYCRQ
Ga0066667_116424861	3300018433	Grasslands Soil	MKCQRCCGHEEATYRVRSDVIDMKVCAACAAEAGRLGIVVEVLSGEQRKGNGEKSKFELRDYRSELLP
Ga0190270_128327751	3300018469	Soil	MKCERCCRREEATYRVRSDVIDMKVCAACADEARRLGIAVEVLAGGRRKGNREKSEFELRDYRSELLP
Ga0207684_104459213	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKCQRCCGHEEATYRVCSDVIDMKVCAACANEARRLGIVVEVLGGEERKGNGEKSKFELRDYRSELLP
Ga0207665_100908402	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKCQRCCGHEEATYRVRSDVIDMKVCAACANEARRLGIVVEVLGGEERKGNGEKSKFELRDYRSELLP
Ga0209438_11350601	3300026285	Grasslands Soil	MKCQRCCWSEDATYRVHSDVIDMKVCAVCAEEARGLGITVELLDAGAGKGGAAKSELKLRDYRSELSPYCH
Ga0209899_10636631	3300027490	Groundwater Sand	MKCQRCCRREEATYRVRSDVIDMKVCAACAEEARRLGIAVEVLGGEERKGNGEKSEPELRDYR
Ga0208185_11191511	3300027533	Soil	MKCQRCCGREEASYRVRSDVIDMKVCGSCADEARRLGIAVEVLGGGERKGNGEKSQLELRDYRSELLP
Ga0209874_10776482	3300027577	Groundwater Sand	MKCQRCCRREEATYRVRSDVIDMKVCAACAEEARRLGIAVEVLGGEERKGNGEKSELELRDYRSELLPYCGQ
Ga0209814_100261402	3300027873	Populus Rhizosphere	MKCQRCCGREEAAYRVRSDVIDMKVCAACADEARRLGIAVEVLGGGERKGNGEKSELERRDDRSEVLLYCGR
Ga0209814_101605901	3300027873	Populus Rhizosphere	MKCQRCCGREEAVYRVRSDVIDMKVCAACADEARRLRIAVEVLGGEERKGNREKSELEFRDYRSELLP
Ga0209857_10038844	3300027957	Groundwater Sand	MKCQRCCRREEATYRVRSDVIDMKVCAACAEEARRLGIAVEVLGGEERKGNGEKSEPELRDYRSKLLPYCGQ
Ga0170819_139293292	3300031469	Forest Soil	MKCERCCGRQEAVYRVRSDVIDMKVCAACAVEASRLGIAVEVLGGGERKGNGAKSELELRDYRSELLP
Ga0307480_10023272	3300031677	Hardwood Forest Soil	MKCQRCCGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEILVGGGRKGNGEKSEFELRDYRSELLL
Ga0307469_107194512	3300031720	Hardwood Forest Soil	MKCQRCSGREEASYRVRSDVIDMKVCAACADEARRLRIAVDVLGGQERKGNGEKSQLEFRDYRSELLP
Ga0307468_1001918622	3300031740	Hardwood Forest Soil	MQCQRCCGHEEATCRVRSDVIDMKVCVACADEARRLGIAVEILGGQEKKGNVEKSKFELQDYRSELLP
Ga0307470_102110171	3300032174	Hardwood Forest Soil	MKCQRCSGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEVLVGGGRKGNGEKSEFELRDYRSELLL
Ga0307471_1014618321	3300032180	Hardwood Forest Soil	CGHEEAAYRVRSDVIDMKVCAACANEARRLGIVVEVLSGEERKGNGEKSKFELRDYRSELLP
Ga0307471_1016760971	3300032180	Hardwood Forest Soil	CCGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEILVGGGRKGNGEKSEFELRDYRSELLL
Ga0307471_1026728171	3300032180	Hardwood Forest Soil	MKCQRCSGREEASYRVRSDVIDMKVCAACADEARRLRIAVDVLGGHERKGNGEKSQLEFRDYRSELLP
Ga0307472_1002452412	3300032205	Hardwood Forest Soil	MKCQRCCGREEATYRVRSDVIDMKVCGSCAAEATRLGITVEILVGGGRKGNGEKSEFELRDYRSELLP
Ga0364945_0107879_253_441	3300034115	Sediment	MKCQRCCGCEEVTYRVRSDVIDTKVCAACAEEARSLGIAVEVLGGREKSERKLRDYRSELLP
Ga0364943_0302854_427_603	3300034354	Sediment	MKCERCCEREEATYRVRSDVIDMKVCAACADEARRLGIVVEVLSGEQRKGNGEKSELEV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084447

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences