Metagenome / Metatranscriptome Family F084446

Basic Information
Family ID	F084446
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	53 residues
Representative Sequence	MKLSLLFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTPGR
Number of Associated Samples	97
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.45 %
% of genes near scaffold ends (potentially truncated)	21.43 %
% of genes from short scaffolds (< 2000 bps)	76.79 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Most Common Taxonomy
Group	Bacteria (75.893 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment (13.393 % of family members)
Environment Ontology (ENVO)	Unclassified (26.786 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (27.679 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.50% β-sheet: 0.00% Coil/Unstructured: 57.50%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00571	CBS	4.46
PF00773	RNB	1.79
PF01594	AI-2E_transport	1.79
PF01145	Band_7	1.79
PF00106	adh_short	0.89
PF13541	ChlI	0.89
PF00196	GerE	0.89
PF04972	BON	0.89
PF13282	DUF4070	0.89
PF04055	Radical_SAM	0.89
PF02310	B12-binding	0.89
PF00216	Bac_DNA_binding	0.89
PF12801	Fer4_5	0.89
PF00365	PFK	0.89
PF11999	Ice_binding	0.89
PF01546	Peptidase_M20	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0557	Exoribonuclease R	Transcription [K]	1.79
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.79
COG4776	Exoribonuclease II	Transcription [K]	1.79
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.89
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.89 %
Unclassified	root	N/A	24.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.89 %
Unclassified	root	N/A	24.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.89 %
Unclassified	root	N/A	24.11 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.07 %
Unclassified	root	N/A	24.11 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.89 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	64.29 %
Unclassified	root	N/A	24.11 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.89 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.89 %

Name	Rank	Taxonomy	Distribution
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	39.29 %
Unclassified	root	N/A	24.11 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	8.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	38.39 %
Unclassified	root	N/A	24.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.36 %
Chloroflexi bacterium RIFOXYD12_FULL_57_15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RIFOXYD12_FULL_57_15	3.57 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.89 %

Name	Rank	Taxonomy	Distribution
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	38.39 %
Unclassified	root	N/A	24.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.36 %
Chloroflexi bacterium RIFOXYD12_FULL_57_15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RIFOXYD12_FULL_57_15	3.57 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_162495	All Organisms → cellular organisms → Bacteria	2994	Open in IMG/M
2228664021\|ICCgaii200_c0754582	Not Available	679	Open in IMG/M
3300000559\|F14TC_105299022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	681	Open in IMG/M
3300000787\|JGI11643J11755_11769300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1695	Open in IMG/M
3300000787\|JGI11643J11755_11792677	Not Available	606	Open in IMG/M
3300000890\|JGI11643J12802_12056114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1658	Open in IMG/M
3300000956\|JGI10216J12902_112088461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	964	Open in IMG/M
3300001213\|JGIcombinedJ13530_108010131	Not Available	1151	Open in IMG/M
3300002027\|MIS_10106547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3242	Open in IMG/M
3300002124\|C687J26631_10009563	All Organisms → cellular organisms → Bacteria	3482	Open in IMG/M
3300002124\|C687J26631_10191265	Not Available	681	Open in IMG/M
3300003987\|Ga0055471_10148957	Not Available	713	Open in IMG/M
3300003993\|Ga0055468_10047797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1076	Open in IMG/M
3300003996\|Ga0055467_10293755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	519	Open in IMG/M
3300004019\|Ga0055439_10079889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	941	Open in IMG/M
3300004019\|Ga0055439_10212318	Not Available	622	Open in IMG/M
3300004242\|Ga0066601_10174952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	808	Open in IMG/M
3300004282\|Ga0066599_100709399	Not Available	693	Open in IMG/M
3300004282\|Ga0066599_101158546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	574	Open in IMG/M
3300004282\|Ga0066599_101285048	Not Available	551	Open in IMG/M
3300004463\|Ga0063356_102029112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	871	Open in IMG/M
3300004463\|Ga0063356_103417581	Not Available	684	Open in IMG/M
3300005289\|Ga0065704_10086900	All Organisms → cellular organisms → Bacteria	3062	Open in IMG/M
3300005343\|Ga0070687_101135807	Not Available	573	Open in IMG/M
3300005445\|Ga0070708_100619427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1020	Open in IMG/M
3300005467\|Ga0070706_100182104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1962	Open in IMG/M
3300005468\|Ga0070707_100370603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1391	Open in IMG/M
3300005518\|Ga0070699_101353799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	653	Open in IMG/M
3300005618\|Ga0068864_100540015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1126	Open in IMG/M
3300005840\|Ga0068870_10076360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1840	Open in IMG/M
3300005843\|Ga0068860_102825820	Not Available	503	Open in IMG/M
3300006049\|Ga0075417_10116969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1221	Open in IMG/M
3300006194\|Ga0075427_10029683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	895	Open in IMG/M
3300006755\|Ga0079222_11768218	Not Available	596	Open in IMG/M
3300006852\|Ga0075433_11590857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	564	Open in IMG/M
3300006865\|Ga0073934_10016787	All Organisms → cellular organisms → Bacteria	8040	Open in IMG/M
3300006871\|Ga0075434_100527099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1202	Open in IMG/M
3300006871\|Ga0075434_102604646	Not Available	506	Open in IMG/M
3300006880\|Ga0075429_100043414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3912	Open in IMG/M
3300006904\|Ga0075424_101841655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	640	Open in IMG/M
3300006954\|Ga0079219_11373032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	629	Open in IMG/M
3300009009\|Ga0105105_10264617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	917	Open in IMG/M
3300009037\|Ga0105093_10023107	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300009037\|Ga0105093_10528206	Not Available	660	Open in IMG/M
3300009081\|Ga0105098_10000989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	10147	Open in IMG/M
3300009082\|Ga0105099_10060691	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2010	Open in IMG/M
3300009085\|Ga0105103_10519234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	670	Open in IMG/M
3300009091\|Ga0102851_11366999	Not Available	785	Open in IMG/M
3300009100\|Ga0075418_11729251	Not Available	680	Open in IMG/M
3300009111\|Ga0115026_10314427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1102	Open in IMG/M
3300009146\|Ga0105091_10006893	All Organisms → cellular organisms → Bacteria	4811	Open in IMG/M
3300009147\|Ga0114129_10055800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5536	Open in IMG/M
3300009148\|Ga0105243_12261345	Not Available	581	Open in IMG/M
3300009156\|Ga0111538_12723327	Not Available	620	Open in IMG/M
3300009157\|Ga0105092_10025578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3113	Open in IMG/M
3300009162\|Ga0075423_10684628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1082	Open in IMG/M
3300009165\|Ga0105102_10278080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	860	Open in IMG/M
3300009167\|Ga0113563_10875316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1024	Open in IMG/M
3300009167\|Ga0113563_13063552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	566	Open in IMG/M
3300009168\|Ga0105104_10002799	All Organisms → cellular organisms → Bacteria	12588	Open in IMG/M
3300009169\|Ga0105097_10271823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	935	Open in IMG/M
3300009696\|Ga0116177_10415615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	707	Open in IMG/M
3300010038\|Ga0126315_10185735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1246	Open in IMG/M
3300010040\|Ga0126308_11154813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	547	Open in IMG/M
3300010399\|Ga0134127_10350914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1441	Open in IMG/M
3300011433\|Ga0137443_1208504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RIFOXYD12_FULL_57_15	583	Open in IMG/M
3300011444\|Ga0137463_1359004	Not Available	522	Open in IMG/M
3300012350\|Ga0137372_10266205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1342	Open in IMG/M
3300012675\|Ga0137337_1014520	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300014326\|Ga0157380_10664368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1042	Open in IMG/M
3300014326\|Ga0157380_11215572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	798	Open in IMG/M
3300014502\|Ga0182021_10779244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1148	Open in IMG/M
3300014875\|Ga0180083_1099793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	636	Open in IMG/M
3300014884\|Ga0180104_1186756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	619	Open in IMG/M
3300018053\|Ga0184626_10137442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1039	Open in IMG/M
3300018059\|Ga0184615_10414047	Not Available	737	Open in IMG/M
3300018059\|Ga0184615_10445732	Not Available	704	Open in IMG/M
3300018059\|Ga0184615_10510936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RIFOXYD12_FULL_57_15	645	Open in IMG/M
3300018074\|Ga0184640_10460422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	564	Open in IMG/M
3300020048\|Ga0207193_1076719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	3217	Open in IMG/M
3300021090\|Ga0210377_10043979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3121	Open in IMG/M
3300022185\|Ga0079039_1273215	Not Available	507	Open in IMG/M
3300025310\|Ga0209172_10057344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2384	Open in IMG/M
3300025313\|Ga0209431_10155037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1813	Open in IMG/M
3300025324\|Ga0209640_10471167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1027	Open in IMG/M
3300025580\|Ga0210138_1081010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	774	Open in IMG/M
3300025910\|Ga0207684_10275798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1450	Open in IMG/M
3300025922\|Ga0207646_10668176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	930	Open in IMG/M
3300025953\|Ga0210068_1080417	Not Available	512	Open in IMG/M
3300027675\|Ga0209077_1013872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2133	Open in IMG/M
3300027726\|Ga0209285_10080833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	981	Open in IMG/M
3300027739\|Ga0209575_10233328	Not Available	646	Open in IMG/M
3300027743\|Ga0209593_10023989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2446	Open in IMG/M
3300027743\|Ga0209593_10025932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2341	Open in IMG/M
3300027873\|Ga0209814_10066195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1515	Open in IMG/M
3300028380\|Ga0268265_10010897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6140	Open in IMG/M
3300028864\|Ga0302215_10326239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RIFOXYD12_FULL_57_15	557	Open in IMG/M
3300030047\|Ga0302286_10015351	All Organisms → cellular organisms → Bacteria	4556	Open in IMG/M
3300031228\|Ga0299914_10057918	All Organisms → cellular organisms → Bacteria	3325	Open in IMG/M
3300031228\|Ga0299914_10270340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1501	Open in IMG/M
3300031728\|Ga0316578_10359482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	866	Open in IMG/M
3300031824\|Ga0307413_10802461	Not Available	791	Open in IMG/M
3300031903\|Ga0307407_11655583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	509	Open in IMG/M
3300031949\|Ga0214473_10113512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3164	Open in IMG/M
3300031949\|Ga0214473_10242345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2075	Open in IMG/M
3300033418\|Ga0316625_100848217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	792	Open in IMG/M
3300033485\|Ga0316626_11448322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RIFOXYD12_FULL_57_15	618	Open in IMG/M
3300033486\|Ga0316624_10525981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1016	Open in IMG/M
3300034128\|Ga0370490_0046262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1432	Open in IMG/M
3300034818\|Ga0373950_0091101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	647	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.00%
Host-Associated	Host-Associated	24.11%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	43.75%
Terrestrial	Environmental → Terrestrial	31.25%
Plants	Host-Associated → Plants	24.11%
Wastewater	Engineered → Wastewater	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	29.46%
Freshwater	Environmental → Aquatic → Freshwater	25.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.96%
Sediment	Environmental → Aquatic → Sediment	9.82%
Marine	Environmental → Aquatic → Marine	7.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.14%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.79%
Peat	Environmental → Terrestrial → Peat	1.79%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.07%
Sediment	Environmental → Aquatic → Freshwater → Sediment	15.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.39%
Loam	Environmental → Terrestrial → Soil → Loam	10.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.82%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.36%
Pond	Environmental → Aquatic → Freshwater → Pond	4.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.57%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Lake	Environmental → Aquatic → Freshwater → Lake	0.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.07%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	15.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.82%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.36%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	4.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.46%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.57%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.57%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	13.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.71%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.25%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.36%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	4.46%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.46%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.68%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.79%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.89%
Sinkhole Freshwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater	0.89%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002027	Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1.5k-5k	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004242	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009696	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG	Engineered	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012675	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT333_2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014875	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_1_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300022185	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027726	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027739	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028864	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_1	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031728	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0607.00004980	2162886007	Switchgrass Rhizosphere	MDLLTLLAYPLVFVHGKLQQYSKSKESIPLANLLVTIPVTSDKQPIGKL
ICCgaii200_07545823	2228664021	Soil	MGEEMIMKLKLIFILMELITLLAYPIVFVQSNLRSFSRSKERIPVANLLIILPVRQSK
F14TC_1052990221	3300000559	Soil	KLYILFMIMDLFTLLAYPFVLMHGKLGQFSKSKESVPVPNILVPVPVIPGR*
JGI11643J11755_117693004	3300000787	Soil	MKLNLLFFVMDLLILLAYPIIFVHGKLRSFTESRESVLVPNLLVAVPVTLGK*
JGI11643J11755_117926772	3300000787	Soil	MGEEMIMKLKLIFILMELITLLAYPIVFVQSNLRSFSRSKERIPVANLLIXXPVRQSK*
JGI11643J12802_120561143	3300000890	Soil	MIMKLKLIFILMELITLLAYPIVFVQSNLRSFSRSKERIPVANLLIIVPVRQSK*
JGI10216J12902_1120884612	3300000956	Soil	MESEERMKLNLIFIVMELLTLLAYPIVFVHSKLQPFLESKESIPVPNLSMIVPVTSGK*
JGIcombinedJ13530_1080101312	3300001213	Wetland	VKLNFLFIVMDLLTLLAYLIVFVRGKLRQFSTSKESIPSVILLTPGPVKSGRLSIE*
MIS_101065475	3300002027	Sinkhole Freshwater	MKLSLLFIVMDLLTILAYPIVFVHGKLRHFSKSKEDTTLELVPVPVTANN*
C687J26631_100095635	3300002124	Soil	MKLTLLFIVMDLLTLLAYPIVFVHGKLYQLFRSKESVPLASQLVSVSVRPGR*
C687J26631_101912652	3300002124	Soil	MKLNLIFMVMELLTLLAYPIVFVHGKLRPFSKSKVRDPVPNLLVIVPVAPGK*
Ga0055471_101489572	3300003987	Natural And Restored Wetlands	MRLSLLFIVMDLLTLLAYPIVFAHGKLRQFSNSKESIPLANLLVIVPAPPGT*
Ga0055468_100477971	3300003993	Natural And Restored Wetlands	MRLSLLFIVMDLLTLLAYPIVFAHGKLRQFSNSKESIPLANLLVIVPVPPGT*
Ga0055467_102937552	3300003996	Natural And Restored Wetlands	SIGRRGEKTMRLSLLFIVMDLLTLLAYPIVFAHGKLRQFSNSKESIPLANLLVIVPVPPGT*
Ga0055439_100798892	3300004019	Natural And Restored Wetlands	MKLNILFIAMNVLTVLAYPIVFVYGKLRKFSKPKESIALTNLMVTVPVVLDG*
Ga0055439_102123181	3300004019	Natural And Restored Wetlands	MKLNILFIVMNVLRALAYPIVFVYGKLRKLSKPKESIALANLMVAVPIAPDR*
Ga0066601_101749522	3300004242	Freshwater	MKLKLLFIAMDLLTILAYPIVFVHGKLRHFSKSKEDTTQKLVSVPVTAGG*
Ga0066599_1007093992	3300004282	Freshwater	KLKLLFIVMDLLTILAYPIVFVHGKLRQFIKSKESIALTNLLVTGSITPGR*
Ga0066599_1011585461	3300004282	Freshwater	MKLNLIFIVMDLLTILAYPIVFLHGKFRQFSKPKENIALALVAASVTPGRRLI*
Ga0066599_1012850481	3300004282	Freshwater	MKLKLLFIVMDLLTILAYPIVFLHGKLRRFAKPKEGVALALIPVPATAGG*
Ga0063356_1020291122	3300004463	Arabidopsis Thaliana Rhizosphere	MKLSLLFLVMELLTLLAYPIVFVHGRLRRFSKSKERIPVSNLSIIVPVTPD*
Ga0063356_1034175813	3300004463	Arabidopsis Thaliana Rhizosphere	MIMKLKLIFILMELITLLAYPIVFVQSNLRSFSRSKERIPVANLLI
Ga0065704_100869006	3300005289	Switchgrass Rhizosphere	MKLSLLFIVMELLTVLVYPIVFVHGKLHQFSNSKGSIFVPNLLVPVPVRPGR*
Ga0070687_1011358071	3300005343	Switchgrass Rhizosphere	LFIIMDSLTLLAYPIVFAHGKLRQFSESKESISLANLLVGGSVTAGR*
Ga0070708_1006194271	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LSLLFIVMDLLTLLAYPIVFVHGKLRQFSKSKESIPGLNLLVAVPVTLGR*
Ga0070706_1001821044	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LGEDKTMKLSLHFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTPGR*
Ga0070707_1003706032	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TLLAYPIVFAHGKLRQFSESKESISLANLLVGGSVTAGR*
Ga0070699_1013537992	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	GEEKTMKLSLLFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTLGR*
Ga0068864_1005400153	3300005618	Switchgrass Rhizosphere	FIVMELLTVLVYPIVFVHGKLHQFSNSKGSIFVPNLLVPVPVRPGR*
Ga0068870_100763602	3300005840	Miscanthus Rhizosphere	MKLTLLFIMMDLLTLLAYPIVFVHGKLRQLSNSREGIPLANLLLTVPVTPDR*
Ga0068860_1028258202	3300005843	Switchgrass Rhizosphere	MDLLALPAYPIVFVHAKLRQFSKSKENITLANLLVGGSVTAGR*
Ga0075417_101169691	3300006049	Populus Rhizosphere	MKLSLLFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTPGR*
Ga0075427_100296832	3300006194	Populus Rhizosphere	LGEDKTMKLSLLFIVMDLLTLLAYPIVFVHSKQRQFSKPKENIPGPNLLVAVPVTPGR*
Ga0079222_117682182	3300006755	Agricultural Soil	MGEELTMKLNLIFILMQLFTLLAYPIVFVQSNLRSFSSSRESIPVPDLLMIVPVTPGK*
Ga0075433_115908571	3300006852	Populus Rhizosphere	LFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTPGR*
Ga0073934_1001678711	3300006865	Hot Spring Sediment	MKAGIGRRGEKTLRLSLLFIVMDLLTLLAYPIVFAHGKLRQFSNSKESIPLANVFVTVPVPPGT*
Ga0075434_1005270994	3300006871	Populus Rhizosphere	LGEEKTIKLSLLFIIMDLLTLLAYPIVFVHGKLHQFSKSKESIPVPNLLVTVPVIPYR*
Ga0075434_1026046461	3300006871	Populus Rhizosphere	LGEDKTMKLSLLFIVMDLLTLLAYPIVFVHSKLRQFSKQKENIPGPNLLVAVPVTPGR*
Ga0075429_1000434145	3300006880	Populus Rhizosphere	MKLNLIFIVMELLTLLAYPIVFVHGRLRRFSKSKERIPVSNLSMIVPVTTD*
Ga0075424_1018416551	3300006904	Populus Rhizosphere	LGEDKTMKLSLLFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTPGR*
Ga0079219_113730321	3300006954	Agricultural Soil	MGEELTMKLNLIFILMQLITLLAYPIVFVQSKLRPFSRSRESIPVPDLSMIVSVTPGK*
Ga0105105_102646171	3300009009	Freshwater Sediment	KLLFIVMDLLTILAYPIVFLHGKLRRFAKPKEGVALELIPVPATAGG*
Ga0105093_100231073	3300009037	Freshwater Sediment	IVMDLLTILAYPIVFMYGKLRWFSKSKESIPLTHLLVPVAIAPDG*
Ga0105093_105282062	3300009037	Freshwater Sediment	MKMKLSLLFIVMDFLTILAYPIVFLHGKLRQFSKPKEGVTLALVPVPVTPVK*
Ga0105098_1000098915	3300009081	Freshwater Sediment	MKLSLLFIVMDLLTSLAYAILFVHGKLCQFSNSKGSIALTNLPVTVPVTAAR*
Ga0105099_100606913	3300009082	Freshwater Sediment	MKLSLLFIVMDLVTILAYPIVFLHSKLRQFSKPKEGVTLASVPVPVAPGRQPN*
Ga0105103_105192342	3300009085	Freshwater Sediment	FIVMDLLTILAYPIVFLHGKLRQFSKPKEGVTLALVPVPVTRVKKPN*
Ga0102851_113669992	3300009091	Freshwater Wetlands	MKLYLLFIIMDLLTLLAYPIVFVHGQLRQFSKSKERIALANLLGISVTPGR*
Ga0075418_117292512	3300009100	Populus Rhizosphere	MKLSLLFIVMDLLTLLAYQIVFVHSKERQFSKPKKNIPGPNLLVAVPVTPGR*
Ga0115026_103144272	3300009111	Wetland	MKLYLLFIVMDLLTLLVYPIVYVHSTLRQFSKSRESIALANLWVTGSVTPGRSPTEI*
Ga0105091_100068935	3300009146	Freshwater Sediment	MRLSLLFIVMDLVTLLAYPIVFVHGKLRQFSKRKAVINLANSLVTGSVIPDS*
Ga0114129_1005580010	3300009147	Populus Rhizosphere	LGEEKTIKLSLLFIIMDLLTILAYPIVFVHGKLSQFSKSKESIPVPNLLVTVPVTVGR*
Ga0105243_122613452	3300009148	Miscanthus Rhizosphere	LGEEKTMKLSLLFIVMDLLTLLAYPIVFVHGKLRQFSKSKESIPGPNLLVAVPVTLGR*
Ga0111538_127233272	3300009156	Populus Rhizosphere	MKLSLLFIVMDLLTLLAYPIVFVHGKLRQFSKSKESIPVLNLFVAIPVIPGK*
Ga0105092_100255786	3300009157	Freshwater Sediment	MRLNLFFIVMYLLTLLAYPIVFVHGKLRRFSNPKVSMPLANLLATVPVTPVRR*
Ga0075423_106846282	3300009162	Populus Rhizosphere	LGEEKTMKLSLLFIVMDLLTLLAYPIVFVHGKLRQFSKSKESIPVLNLFVAIPVIPGK*
Ga0105102_102780801	3300009165	Freshwater Sediment	MKLSLLFIVMDLLTILAYPIVFLHGKLSRFSKSKEGITLALVPVPVTPGRQPN*
Ga0113563_108753163	3300009167	Freshwater Wetlands	MKMKLGLLFIIMDLLTILAYPVVFLHGKLRQFAKPKEGVTLAVVPVIPVK*
Ga0113563_130635521	3300009167	Freshwater Wetlands	LFIVMDLLTLLAYPIVFVHGKLRQFSDLKESLPLASRFVTVPVAPVR*
Ga0105104_100027995	3300009168	Freshwater Sediment	MDLVTLLAYPIVFVHGKLRQFSKRKAVINLANSLVTGSVIPDS*
Ga0105097_102718232	3300009169	Freshwater Sediment	MKLSLLFIVMDLVTILAYPIVFLHSKLRQFSKPKEGVTLASVPVPVTPGRQPN*
Ga0116177_104156151	3300009696	Anaerobic Digestor Sludge	MKLNLIFIVMDLLTLLVYPVVFVHGKLRQFSKSKEDDLPPSLLSASSVLPG*
Ga0126315_101857352	3300010038	Serpentine Soil	MKLNLFFIVMDLLTLLAYPIVFVHGKLRRFYKIKESIPVPKLFVVVPVTPGR*
Ga0126308_111548131	3300010040	Serpentine Soil	EKTIKLNLLFITMELLTLLAYPIVFVHGKLYPFAKSGETVPVPNLFVVLSTAPEK*
Ga0134127_103509142	3300010399	Terrestrial Soil	MKLNLIFIAMELLTLLADPIVFLHSKLRPFSKSKGMIPVPNRLVILPVTPPK*
Ga0137438_10036358	3300011431	Soil	MKLNLFFIAMYVLTILAYPIVFVYGKLRQYSNIKDSTVPVNN*
Ga0137443_12085042	3300011433	Soil	MISKQREAMRHKMKLGLLFIVMDLLTLLAYPIVFVHGKIRQFSKSKESNTLSSSLLVTGPVTPSR*
Ga0137463_13590041	3300011444	Soil	MGEEKTMKLGLLFIVMDLLTLLAYPIVFVYGKLLQFSRSKESTPASNLLATVPVLTGR*
Ga0137372_102662053	3300012350	Vadose Zone Soil	LGEEKTLKLNLLFIVMDLLTLLAYPIVFVQSRLRQFSKSKESIQLANLLGTGLITAGR*
Ga0137337_10145203	3300012675	Soil	IVMDLLTLLAYPIVFVHGKIRQFSKSKENIALSNLLVNSSVTPGR*
Ga0157380_106643682	3300014326	Switchgrass Rhizosphere	MGEEMIMKLNLTILMELITLLAYPIVFVQSNLRSFSRSKERIPVANLLIILPVRQGD*
Ga0157380_112155721	3300014326	Switchgrass Rhizosphere	MGEEMIMKLKLIFVLMELITLLAYPIVFVQSKLRPFSRSKHWIPAANL
Ga0182011_106707711	3300014496	Fen	MDLLTLLAYPILFVHGKLREFSTSKENIIPANILITGSAAVSG*
Ga0182021_107792441	3300014502	Fen	MKLNLIFIAMDLLTILAYPIVFVHSKIRQFLKSKEKSPLDNLLVTTGR*
Ga0180083_10997933	3300014875	Soil	MKLNFLFIIMDLLTLLAYPIIFVHGKLRQFSKSKVSITLDNLLVTTGS*
Ga0180104_11867561	3300014884	Soil	MKLNSLFIAMDLLTLLAYTIVFVQGKLRQFSKPKDGVPLVNLLVTVPVASGR*
Ga0184626_101374422	3300018053	Groundwater Sediment	LFIIMDLLILLVYPIIFAYGGLRQFSKSKERFTRTKLLVTGAVTPGR
Ga0184615_104140472	3300018059	Groundwater Sediment	MKLKLLFIVMDLLTLLAYPIVFVHGKLLQFSNSKGSIPLANLLVPVPVTPGR
Ga0184615_104457322	3300018059	Groundwater Sediment	MKLNLIFIVMELLTLLAYPIVFVHGKLRKFSKLKESTPLTKLLVAVPITPDR
Ga0184615_105109362	3300018059	Groundwater Sediment	MKLKLLFIVMDLLTILAYPIVFMHGKQRQFSKSKEYITSDNLLVTTGR
Ga0184640_104604221	3300018074	Groundwater Sediment	MKLKLIFIVMDLLTVLAYPIFFVHGKLRQLPKSKERTALANILAAGS
Ga0207193_10767193	3300020048	Freshwater Lake Sediment	MKLNILFIVMDLLTILAYPIVFLHGKLRQLAKSKEGVTLALVPVPATPGRQPN
Ga0210377_100439797	3300021090	Groundwater Sediment	MKLKLLFIVMDLLTILAYPIVFVYGKLRQFSKLKESVTPDNLPVRAGR
Ga0079039_12732151	3300022185	Freshwater Wetlands	DPGEMIMKLYLLFIVMDLLTLLAYPIVFVHGQLRQFSKSKERIALANLLGISVTPGR
Ga0209172_100573446	3300025310	Hot Spring Sediment	MKAGIGRRGEKTLRLSLLFIVMDLLTLLAYPIVFAHGKLRQFSNSKESIPLANVFVTVPVPPGT
Ga0209431_101550372	3300025313	Soil	MKLTLLFIVMDLLTLLAYPIVFVHGKLYQLFRSKESVPLASQLVSVSVRPGR
Ga0209640_104711671	3300025324	Soil	MKLNLIFMVMELLTLLAYPIVFVHGKLRQFSKSKVRDPVPNLLV
Ga0210138_10810101	3300025580	Natural And Restored Wetlands	MKLNILFIAMNVLTVLAYPIVFVYGKLRKFSKPKESIALTNLMVTVPVVLDG
Ga0207684_102757983	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LGEDKTMKLSLHFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTPGR
Ga0207646_106681763	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LGEEKTMKLSLLFIVMDLLTLLAYPIVFVHGKLRQFSKSKESIPGPNLLVAVPVTLGR
Ga0210068_10804172	3300025953	Natural And Restored Wetlands	MAEEKTMKLNLIFIVMELLTLLAYPIVFVQSKLRPFSKSKERIPLPNVLIIVPVTPGK
Ga0209077_10138723	3300027675	Freshwater Sediment	LREAKTMRLSLLFIVMDLVTLLAYPIVFVHGKLRQFSKRKAVINLANSLVTGSVIPDS
Ga0209285_100808332	3300027726	Freshwater Sediment	MKLSLLFIVMDLVTILAYPIVFLHSKLRQFSKPKEGVTLASVPVPVTPGRQPN
Ga0209575_102333282	3300027739	Freshwater	MKLKLLFIAMDLLTILAYPIVFVHGKLRHFSKSKEDTTQKLVSVPVTAGG
Ga0209593_100239895	3300027743	Freshwater Sediment	MRLSLLFIVMDLVTLLAYPIVFVHGKLRQFSKRKAVINLANSLVTGSVIPDS
Ga0209593_100259322	3300027743	Freshwater Sediment	MRLNLFFIVMYLLTLLAYPIVFVHGKLRRFSNPKVSMPLANLLATVPVTPVRR
Ga0209814_100661953	3300027873	Populus Rhizosphere	LGEDKTMKLSLLFIVMDLLTLLAYPIVFVHSKLRQFSKPKENIPGPNLLVAVPVTPGR
Ga0268265_100108978	3300028380	Switchgrass Rhizosphere	MKLSLLFIVMELLTVLVYPIVFVHGKLHQFSNSKGSIFVPNLLVPVPVRPGR
Ga0302215_103262391	3300028864	Fen	MKLKLNLFFIVMDLLTILAYPIIYVHGKLRQFSKLKESIAPNKLLVTAG
Ga0302286_100153516	3300030047	Fen	MKLKLNLFFIVMDLLTILAYPIIYVHGKLRQFSKLKESIAPNKLLVTAGR
Ga0299914_100579185	3300031228	Soil	MRLSLLFIVMDLLTVLAYPIVYVHGKLRPFAKSKESIPLANRLVPRSVTQAR
Ga0299914_102703405	3300031228	Soil	MRLSLLFIVMDLLTLLAYPIVFLHGKLRPFAKSKESIPLANRLVIVPAPPGT
Ga0316578_103594822	3300031728	Rhizosphere	MKLKLLFIVMDLLTILAYPFIFLYGKLRQFSKFRESTALAKLLVTDPVIAGR
Ga0307413_108024611	3300031824	Rhizosphere	MREMTMKLNLIFLVMELLTLLAYPIVFVHGQLLQFSNSKAGILLANLWSSDPVAPDR
Ga0307407_116555832	3300031903	Rhizosphere	EMTMKLNLIFLVMELLTLLAYPIVFVHGQLLQFSNSKAGILLANLWSSDPVAPDR
Ga0214473_101135124	3300031949	Soil	MKVSVGRREEKTMKLHLLFIVMDLLTVLAYPIVFAHGKLRQFSKSKESLLLANLLVTVPVTPGR
Ga0214473_102423452	3300031949	Soil	MKLNLIFIVMDLLTILAYPIVFMHGKLRWFSKSKESVPLTNLLVPVAITSDG
Ga0316625_1008482172	3300033418	Soil	MKLNMLFIVMDLLTVLAYPIVFVHGKLRHYLKPKESIHPPNSWVVAPIVLER
Ga0316626_114483222	3300033485	Soil	MKLYLLFIIMDLLTLLAYPIVYVHGTLRQFSKSRESIALANLWVTGAVTPGRSPIEIL
Ga0316624_105259812	3300033486	Soil	MKLSLLFIVMDLLTLLAYPIVFVHGKLRQFSNSRENLPLAKLFVAIPATPVR
Ga0370490_0046262_660_839	3300034128	Untreated Peat Soil	MREEEKTMKLHLIFIVMDLLTLLAYPIVFMHGKLLQFSNSKGSIPVANLLVPVPITTER
Ga0373950_0091101_23_181	3300034818	Rhizosphere Soil	MKLSLLFIVMDLLTLLAYPIVFVYGKLRQFSKSKESIPVPNLFVAVPITPGK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084446

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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