Metagenome / Metatranscriptome Family F084440

Basic Information
Family ID	F084440
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	67 residues
Representative Sequence	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA
Number of Associated Samples	101
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	32.14 %
% of genes near scaffold ends (potentially truncated)	27.68 %
% of genes from short scaffolds (< 2000 bps)	80.36 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (54.464 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.964 % of family members)
Environment Ontology (ENVO)	Unclassified (36.607 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.821 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.62% β-sheet: 0.00% Coil/Unstructured: 34.38%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03447	NAD_binding_3	42.86
PF03466	LysR_substrate	30.36
PF01555	N6_N4_Mtase	3.57
PF08544	GHMP_kinases_C	1.79
PF13011	LZ_Tnp_IS481	1.79
PF00578	AhpC-TSA	1.79
PF00288	GHMP_kinases_N	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	3.57
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	3.57
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	3.57

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	11.61 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	11.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	11.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	11.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	11.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_101889036	Not Available	602	Open in IMG/M
3300005330\|Ga0070690_100231166	All Organisms → cellular organisms → Bacteria → Acidobacteria	1300	Open in IMG/M
3300005331\|Ga0070670_100124444	All Organisms → cellular organisms → Bacteria	2225	Open in IMG/M
3300005332\|Ga0066388_107663170	Not Available	541	Open in IMG/M
3300005334\|Ga0068869_100150685	All Organisms → cellular organisms → Bacteria	1803	Open in IMG/M
3300005338\|Ga0068868_100340262	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300005347\|Ga0070668_101764282	Not Available	569	Open in IMG/M
3300005353\|Ga0070669_101864466	Not Available	525	Open in IMG/M
3300005354\|Ga0070675_100015886	All Organisms → cellular organisms → Bacteria	5962	Open in IMG/M
3300005356\|Ga0070674_100056347	All Organisms → cellular organisms → Bacteria	2725	Open in IMG/M
3300005367\|Ga0070667_100392696	All Organisms → cellular organisms → Bacteria → Acidobacteria	1262	Open in IMG/M
3300005441\|Ga0070700_100416659	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300005455\|Ga0070663_100039958	All Organisms → cellular organisms → Bacteria	3281	Open in IMG/M
3300005455\|Ga0070663_101237854	Not Available	657	Open in IMG/M
3300005467\|Ga0070706_100716913	Not Available	927	Open in IMG/M
3300005544\|Ga0070686_101052904	Not Available	670	Open in IMG/M
3300005564\|Ga0070664_101919492	Not Available	562	Open in IMG/M
3300005578\|Ga0068854_100165593	All Organisms → cellular organisms → Bacteria	1716	Open in IMG/M
3300005617\|Ga0068859_100782284	Not Available	1042	Open in IMG/M
3300005719\|Ga0068861_101277437	Not Available	713	Open in IMG/M
3300005841\|Ga0068863_102373597	Not Available	540	Open in IMG/M
3300006046\|Ga0066652_102033243	Not Available	511	Open in IMG/M
3300006048\|Ga0075363_100044670	All Organisms → cellular organisms → Bacteria	2348	Open in IMG/M
3300006051\|Ga0075364_10125911	All Organisms → cellular organisms → Bacteria → Acidobacteria	1718	Open in IMG/M
3300006051\|Ga0075364_10835203	Not Available	628	Open in IMG/M
3300006195\|Ga0075366_10045776	All Organisms → cellular organisms → Bacteria	2593	Open in IMG/M
3300006195\|Ga0075366_10541021	Not Available	721	Open in IMG/M
3300006195\|Ga0075366_10745224	Not Available	609	Open in IMG/M
3300006353\|Ga0075370_10024587	All Organisms → cellular organisms → Bacteria	3328	Open in IMG/M
3300006844\|Ga0075428_102083462	Not Available	587	Open in IMG/M
3300006894\|Ga0079215_11696041	Not Available	505	Open in IMG/M
3300009094\|Ga0111539_10338070	All Organisms → cellular organisms → Bacteria → Acidobacteria	1753	Open in IMG/M
3300009789\|Ga0126307_10717896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300010036\|Ga0126305_10111516	All Organisms → cellular organisms → Bacteria → Acidobacteria	1657	Open in IMG/M
3300010040\|Ga0126308_10189824	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300010399\|Ga0134127_11177031	All Organisms → cellular organisms → Bacteria → Acidobacteria	833	Open in IMG/M
3300012212\|Ga0150985_105559722	Not Available	857	Open in IMG/M
3300012469\|Ga0150984_117954841	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300012530\|Ga0136635_10171838	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300012891\|Ga0157305_10175879	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M
3300012985\|Ga0164308_10709525	All Organisms → cellular organisms → Bacteria → Acidobacteria	868	Open in IMG/M
3300014326\|Ga0157380_10157658	All Organisms → cellular organisms → Bacteria → Acidobacteria	1969	Open in IMG/M
3300014326\|Ga0157380_12999880	Not Available	538	Open in IMG/M
3300015371\|Ga0132258_10029844	All Organisms → cellular organisms → Bacteria → Acidobacteria	12157	Open in IMG/M
3300015371\|Ga0132258_10989900	All Organisms → cellular organisms → Bacteria → Acidobacteria	2125	Open in IMG/M
3300017792\|Ga0163161_10058813	All Organisms → cellular organisms → Bacteria → Acidobacteria	2794	Open in IMG/M
3300017965\|Ga0190266_10087198	All Organisms → cellular organisms → Bacteria → Acidobacteria	1241	Open in IMG/M
3300018083\|Ga0184628_10310874	Not Available	828	Open in IMG/M
3300018429\|Ga0190272_10464926	All Organisms → cellular organisms → Bacteria → Acidobacteria	1060	Open in IMG/M
3300018432\|Ga0190275_13426458	Not Available	513	Open in IMG/M
3300018465\|Ga0190269_10319694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	916	Open in IMG/M
3300018469\|Ga0190270_10032934	All Organisms → cellular organisms → Bacteria → Acidobacteria	3398	Open in IMG/M
3300018469\|Ga0190270_10887695	All Organisms → cellular organisms → Bacteria → Acidobacteria	908	Open in IMG/M
3300018476\|Ga0190274_10052874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2950	Open in IMG/M
3300018476\|Ga0190274_11753367	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300018481\|Ga0190271_10017459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	5413	Open in IMG/M
3300018481\|Ga0190271_10897686	Not Available	1011	Open in IMG/M
3300019362\|Ga0173479_10009865	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300019377\|Ga0190264_11347244	Not Available	607	Open in IMG/M
3300022880\|Ga0247792_1007124	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300022880\|Ga0247792_1013216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1298	Open in IMG/M
3300022915\|Ga0247790_10053736	Not Available	931	Open in IMG/M
3300023064\|Ga0247801_1050892	Not Available	633	Open in IMG/M
3300023066\|Ga0247793_1054536	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300024055\|Ga0247794_10226204	Not Available	611	Open in IMG/M
3300025893\|Ga0207682_10096932	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1285	Open in IMG/M
3300025901\|Ga0207688_10993050	Not Available	531	Open in IMG/M
3300025918\|Ga0207662_10465371	Not Available	866	Open in IMG/M
3300025920\|Ga0207649_10048058	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2630	Open in IMG/M
3300025925\|Ga0207650_10105445	All Organisms → cellular organisms → Bacteria → Acidobacteria	2176	Open in IMG/M
3300025935\|Ga0207709_11240304	Not Available	615	Open in IMG/M
3300025937\|Ga0207669_10068689	All Organisms → cellular organisms → Bacteria	2214	Open in IMG/M
3300025938\|Ga0207704_11552599	Not Available	568	Open in IMG/M
3300025940\|Ga0207691_10056227	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3584	Open in IMG/M
3300025942\|Ga0207689_10060746	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3108	Open in IMG/M
3300025945\|Ga0207679_10875891	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300025986\|Ga0207658_11044162	Not Available	746	Open in IMG/M
3300026067\|Ga0207678_10519813	Not Available	1039	Open in IMG/M
3300026075\|Ga0207708_11493146	Not Available	594	Open in IMG/M
3300026088\|Ga0207641_11542990	Not Available	666	Open in IMG/M
3300026089\|Ga0207648_11386971	Not Available	660	Open in IMG/M
3300026095\|Ga0207676_10085350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2576	Open in IMG/M
3300026118\|Ga0207675_101325526	Not Available	740	Open in IMG/M
3300027866\|Ga0209813_10046954	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300027866\|Ga0209813_10061337	All Organisms → cellular organisms → Bacteria → Acidobacteria	1201	Open in IMG/M
3300027992\|Ga0247750_1013290	Not Available	775	Open in IMG/M
3300028380\|Ga0268265_10747628	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300028587\|Ga0247828_11017161	Not Available	543	Open in IMG/M
3300028590\|Ga0247823_11144704	Not Available	583	Open in IMG/M
3300028802\|Ga0307503_10565000	Not Available	623	Open in IMG/M
3300028809\|Ga0247824_10718373	Not Available	611	Open in IMG/M
3300028810\|Ga0307294_10072582	Not Available	1044	Open in IMG/M
3300030336\|Ga0247826_11013236	Not Available	660	Open in IMG/M
3300031152\|Ga0307501_10182926	Not Available	589	Open in IMG/M
3300031170\|Ga0307498_10263069	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031229\|Ga0299913_10380041	All Organisms → cellular organisms → Bacteria → Acidobacteria	1400	Open in IMG/M
3300031366\|Ga0307506_10279031	Not Available	646	Open in IMG/M
3300031562\|Ga0310886_10605112	Not Available	673	Open in IMG/M
3300031858\|Ga0310892_10779284	Not Available	661	Open in IMG/M
3300031911\|Ga0307412_10615447	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	922	Open in IMG/M
3300031943\|Ga0310885_10431561	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	707	Open in IMG/M
3300031944\|Ga0310884_10620749	Not Available	647	Open in IMG/M
3300032002\|Ga0307416_101315462	Not Available	829	Open in IMG/M
3300032005\|Ga0307411_11630609	Not Available	596	Open in IMG/M
3300032012\|Ga0310902_10267928	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1037	Open in IMG/M
3300032013\|Ga0310906_10072579	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1792	Open in IMG/M
3300032017\|Ga0310899_10103936	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300032075\|Ga0310890_10729069	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300033550\|Ga0247829_10047645	All Organisms → cellular organisms → Bacteria → Acidobacteria	2994	Open in IMG/M
3300033551\|Ga0247830_10410310	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300034257\|Ga0370495_0008514	All Organisms → cellular organisms → Bacteria	3051	Open in IMG/M
3300034669\|Ga0314794_123507	Not Available	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.68%
Host-Associated	Host-Associated	47.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.89%
Plants	Host-Associated → Plants	47.32%
Aquatic	Environmental → Aquatic	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.07%
Roots	Host-Associated → Plants → Roots	8.04%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.07%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.39%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	8.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.14%
Loam	Environmental → Terrestrial → Soil → Loam	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.68%
Ice	Environmental → Aquatic → Freshwater → Ice	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.07%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	13.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.39%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.04%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	8.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	13.39%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	8.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.46%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027992	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1018890361	3300004156	Soil	MSARAEPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ*
Ga0070690_1002311662	3300005330	Switchgrass Rhizosphere	MSAAGTSRLKCRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA*
Ga0070670_1001244443	3300005331	Switchgrass Rhizosphere	MPERVITLAISDADWKALRALQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA*
Ga0066388_1076631701	3300005332	Tropical Forest Soil	MPERVITLAISDADWKALRTIQPEPVDWLKRTIRETIDRAAAADRPAAKAAGTRPA*
Ga0068869_1001506852	3300005334	Miscanthus Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTSAAAPERPAVKAAGGRAAS*
Ga0068868_1003402622	3300005338	Miscanthus Rhizosphere	ASVRYPVSMSAAGTSRLKCRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA*
Ga0070668_1017642822	3300005347	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQRPLTAAAAPERPAVKAAGGRAAS*
Ga0070669_1018644662	3300005353	Switchgrass Rhizosphere	MGARAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDHGAPVARADSAPERPAVKA
Ga0070675_1000158866	3300005354	Miscanthus Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA*
Ga0070674_1000563474	3300005356	Miscanthus Rhizosphere	MGARAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDHGAPVVRADSAPERPAVKAAGARAQA*
Ga0070667_1003926962	3300005367	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQ
Ga0070700_1004166592	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ*
Ga0070663_1000399584	3300005455	Corn Rhizosphere	MSAAGTSRLKCRMPERVITLAISDADWKALRALQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA*
Ga0070663_1012378541	3300005455	Corn Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTAAAAPERPAVKAAGGRAAS*
Ga0070706_1007169132	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIRDAIDQSAAAPERPAVKAAGARAQA*
Ga0070686_1010529042	3300005544	Switchgrass Rhizosphere	MSAAGTSRLKCRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGASVARADAAPERPAVKAAGARAQA*
Ga0070664_1019194921	3300005564	Corn Rhizosphere	MSARAEPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIAGGTTAPERPA
Ga0068854_1001655932	3300005578	Corn Rhizosphere	MPERVITLAISDADWKALRALQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA*
Ga0068859_1007822841	3300005617	Switchgrass Rhizosphere	GRQPISSWNKCVVSMTRRHRRRLECGMPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTSAAAPERPAVKAAGGRAAS*
Ga0068861_1012774371	3300005719	Switchgrass Rhizosphere	ERVITLAISDADWKALRAVQPEPIDWLKRTIRDAIDQSAAAPERPAVKAAGARAQA*
Ga0068863_1023735971	3300005841	Switchgrass Rhizosphere	RVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTAAAAPERPAVKAAGGRAAS*
Ga0066652_1020332431	3300006046	Soil	RVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDRGAVARADASLERPAVKAAGARAQA
Ga0075363_1000446703	3300006048	Populus Endosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQSAAAPERPAVKAAGARAQA*
Ga0075364_101259112	3300006051	Populus Endosphere	MSGRLPSRLECGMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQSAAAPERPAVKVAGARAQA*
Ga0075364_108352032	3300006051	Populus Endosphere	GMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIAQSAAPPERPAVKAAGARAQA*
Ga0075366_100457762	3300006195	Populus Endosphere	MNARTASRLECGMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIAQSAAPPERPAVKAAGARAQA*
Ga0075366_105410211	3300006195	Populus Endosphere	MQPRRAPGVECRMPERVITLAISDADWKALRALQPEPVDWLKRTIREAIDRGAAAERPAVKAAGARSQS*
Ga0075366_107452242	3300006195	Populus Endosphere	MIAAARRGIECAMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIARGAAVPERPAVKAAGSRGQ*
Ga0075370_100245872	3300006353	Populus Endosphere	MSGRLPSRLECGMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIGQGAPVSRADAAAERPAVKAAGSRAQA*
Ga0075428_1020834622	3300006844	Populus Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIAQGAAPPERPVVKAAGVRAQA*
Ga0079215_116960412	3300006894	Agricultural Soil	CMPATRPSRLQCVMPERVITLAISDADWKALRAVQPEPVDWLKKTIRDAIDRGTAAERPAVKAAGGRAQA*
Ga0111539_103380702	3300009094	Populus Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQNAPLSRADAGPERPAVKAAGARAQA*
Ga0126307_107178961	3300009789	Serpentine Soil	MPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIDQGAPIARADAARERPAVKAAGARAQA*
Ga0126305_101115162	3300010036	Serpentine Soil	MRRAGTSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPVSRVDAAPERPAVKAAGARAQA*
Ga0126308_101898242	3300010040	Serpentine Soil	MPERVITLAISDADWKALRAVQPEPIDWLKQTIRDAIAQSAAPPERPAVKAAGARAQA*
Ga0134127_111770312	3300010399	Terrestrial Soil	MPERVITLAISDADWKALRTIQPEPVDWLKRTIRETIDRAAMADRPVAKSASGRPA*
Ga0150985_1055597222	3300012212	Avena Fatua Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA*
Ga0150984_1179548412	3300012469	Avena Fatua Rhizosphere	LVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAHADAASERPAVKAAGARAQA*
Ga0136635_101718382	3300012530	Polar Desert Sand	MPERVITLAISDAEWKALRAVQPEPVDWLKQTIRDAIASGASAPERPAVKAAGASGRAQA
Ga0157305_101758792	3300012891	Soil	ITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPLSRADAGPERPAVKAAGARAQA*
Ga0164308_107095252	3300012985	Soil	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPVARADSAPERPAVKAAGGRAQA*
Ga0157380_101576582	3300014326	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDHGAPVARADSAPERPAVKAAGARAQA*
Ga0157380_129998801	3300014326	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPVPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ*
Ga0132258_100298449	3300015371	Arabidopsis Rhizosphere	MPERVITLAISDADWKALRTIQPEPVDWLKRTIRETIDRAAAAERPAAKSAGGPRSA*
Ga0132258_109899002	3300015371	Arabidopsis Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDRGAVARADASPERPAVKAAGARAQA*
Ga0163161_100588132	3300017792	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVARANAAPERPAVKAAGARAQA
Ga0190266_100871982	3300017965	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQSAPLSRADAGPERPAVKAAGARAQA
Ga0184628_103108742	3300018083	Groundwater Sediment	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPIDWLKRTIRDAINQHAAVSRVDAAPERPAVKAAGARAQA
Ga0190272_104649262	3300018429	Soil	MSVGGRPRLECRMPERVITLAISDAEWRALRAVQPEPVDWLKQTIRDAIASGASAPERPAVKA
Ga0190275_134264581	3300018432	Soil	LAISDADWKALRAVQPEPVDWLKQTIRDAIDQGAAMARADAAPERPAVKAAGGRAQA
Ga0190269_103196942	3300018465	Soil	MHAGRRPRLECAMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIDRAAAAPERPAVKAAGSRAQA
Ga0190270_100329342	3300018469	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRVVQPEPVDWLKRTIRDAIDQNAPLARADAGPERPAVKAAGARAQA
Ga0190270_108876951	3300018469	Soil	MSAGAGPRLECRMPERIITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQSAPLSPADAGPERPVVKAAGGRAQA
Ga0190274_100528742	3300018476	Soil	MSAGPGPGIECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPGARVDAAPERPAAKAAGARAQA
Ga0190274_117533671	3300018476	Soil	MPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIDQGAPSARADAAAERPAVKAA
Ga0190271_100174595	3300018481	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQNAPLARADAGPERPAVKAAGARAQA
Ga0190271_108976861	3300018481	Soil	CRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDRSAPLSRADAGPERPAVKAAGARAQA
Ga0173479_100098651	3300019362	Soil	MPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIDQGTPIPRADAAPERPAVKAAGGRAQA
Ga0190264_113472441	3300019377	Soil	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDRAGAVAERPAVKAAGARAQG
Ga0247792_10071243	3300022880	Soil	GHPPDASFRYPVSMSARAEPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ
Ga0247792_10132162	3300022880	Soil	MPERVITLAISDADWKALRALQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA
Ga0247790_100537362	3300022915	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQNAPLSRADAGPERPAVKAAGARAQA
Ga0247801_10508921	3300023064	Soil	MSAAGTSRLKCRMPERVITLAISDADWKALRALQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA
Ga0247793_10545362	3300023066	Soil	MSAGTGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPLSRADAGPERPAVKAAGARAQA
Ga0247794_102262041	3300024055	Soil	MSARAEPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ
Ga0207682_100969322	3300025893	Miscanthus Rhizosphere	MSAAGTSRLKCRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA
Ga0207688_109930501	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ERVITLAISDADWKALRAVQPEPVDWLKRTICDAIDQGAAVAGANAAPERPAVKAAGARAQA
Ga0207662_104653711	3300025918	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ
Ga0207649_100480584	3300025920	Corn Rhizosphere	ERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA
Ga0207650_101054453	3300025925	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA
Ga0207709_112403041	3300025935	Miscanthus Rhizosphere	MSARAEPRLECRMPERVITLAISDADWKALRAVQPEPIDWLKRTIRDAIDQSAAAPERPAVKAAGARAQA
Ga0207669_100686891	3300025937	Miscanthus Rhizosphere	MGARAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDHGAPVARADAAPER
Ga0207704_115525991	3300025938	Miscanthus Rhizosphere	MGARAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA
Ga0207691_100562272	3300025940	Miscanthus Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQRPLTAAAAPERPAVKAAGGRAAS
Ga0207689_100607463	3300025942	Miscanthus Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTSAAAPERPAVKAAGGRAAS
Ga0207679_108758912	3300025945	Corn Rhizosphere	MSARAEPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIAGGTTAPERPAAKAAGSRGQ
Ga0207658_110441622	3300025986	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAE
Ga0207678_105198132	3300026067	Corn Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTAAAAPERPAVKAAGGRAAS
Ga0207708_114931462	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSAAGTSRLKCRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ
Ga0207641_115429901	3300026088	Switchgrass Rhizosphere	LECGMPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTAAAAPERPAVKAAGGRAAS
Ga0207648_113869712	3300026089	Miscanthus Rhizosphere	MGARAGSRLECRMPERVITLAISDADWKALRAVQPEPIDWLKRTIREAIAQSPLTSAAAPERPAVKAAGGRAAS
Ga0207676_100853503	3300026095	Switchgrass Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA
Ga0207675_1013255262	3300026118	Switchgrass Rhizosphere	AGMPERVITLAISDADWKALRAVQPEPIDWLKRTIRDAIDQSAAAPERPAVKAAGARAQA
Ga0209813_100469541	3300027866	Populus Endosphere	SMSGRLPSRLECGMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQSAAAPERPAVKVAGARAQA
Ga0209813_100613372	3300027866	Populus Endosphere	MPERVITLAISDADWKALRAVQPEPIDWLKRTIRDAIDQSAAAPERPAVKAAGARAQA
Ga0247750_10132902	3300027992	Soil	MSAAGTSRLKCRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAAVARADAAPERPAVKAAGARAQA
Ga0268265_107476281	3300028380	Switchgrass Rhizosphere	MPERVITLAISDADWKALRALQPEPVDWLKRTIRDAIDQGAAVAGANAAPERPAVKAAGARAQA
Ga0247828_110171611	3300028587	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQSAPLSRADAGPERPVVKAAGARAQA
Ga0247823_111447042	3300028590	Soil	MSAGAGRRLEWPMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGASLSRADAGPERPVAKAAGARAQA
Ga0307503_105650001	3300028802	Soil	GYPVSMSAGAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPVARADSAPERPAVKAAGGRAQA
Ga0247824_107183731	3300028809	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGASLSRADAGLERPVAKAAGARAQA
Ga0307294_100725822	3300028810	Soil	MRRAGISRLECRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIDQGTPIARADAAPERPAVKAAGGRAQA
Ga0247826_110132361	3300030336	Soil	PERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQNAPLARADAGPERPAVKAAGARAQA
Ga0307501_101829262	3300031152	Soil	AHRSNRLFVCLAAGRATLECGMPERVITLAISDADWKALRAVQPEPIDWLKQTIRAAIDQAAAPERPAVKAAGGRAQ
Ga0307498_102630692	3300031170	Soil	MSAGPGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDRGASVSGADSAPERPAVKAAGARAQA
Ga0299913_103800411	3300031229	Soil	MSVRRRPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIDRGGAAGARPAVKAAGGRAPG
Ga0307506_102790312	3300031366	Soil	MSAGAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPVARAASAPERPAVKAAGGRAQA
Ga0310886_106051121	3300031562	Soil	MGARAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDHGAPVVRADSAPERPAVKAAGARA
Ga0310892_107792842	3300031858	Soil	VITLAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ
Ga0307412_106154472	3300031911	Rhizosphere	MPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIAQGAAPPERPVVKAAGARAQA
Ga0310885_104315612	3300031943	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPLSRADAGPERPAVKAAGARAQA
Ga0310884_106207491	3300031944	Soil	MPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGAPLSRADAGPERPAVKAAGARAQA
Ga0307416_1013154622	3300032002	Rhizosphere	MRRAGAARLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIASSAAAPERPAVKAVGGRAPA
Ga0307411_116306092	3300032005	Rhizosphere	MPERVITLAISDADWKALRAVQPEPIDWLKQTIRDAIDHGAAPERPAVKAAGAGTRAQA
Ga0310902_102679282	3300032012	Soil	MSARAEPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQNAPLSRADAGPERPAVKAAGARAQA
Ga0310906_100725792	3300032013	Soil	MGARAGSRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQNAPLSRADAGPERPAVKAAGARAQA
Ga0310899_101039362	3300032017	Soil	LAISDADWKALRAVQPEPVDWLKQTIRDAIASGTTAPERPAAKAAGSRGQ
Ga0310890_107290692	3300032075	Soil	MSAGAGPRLEWPMPERVITLAISDADWKALRAVQPEPVDWLKQTIRDAIARGAAVPERPAVKAAGSRGQ
Ga0247829_100476454	3300033550	Soil	MSAGAGPRLECRMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQSASLSRADAGPERPVAKAAGARAQA
Ga0247830_104103102	3300033551	Soil	MSAGAGPRLEWPMPERVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQGASLSRADAVPERPVAKAAGARAQA
Ga0370495_0008514_2037_2228	3300034257	Untreated Peat Soil	MPERVITLAISDADWKALRAVQPEPVDWLKRTIREAIDQGAPTLLGGAGERPAVKAAGGRTQA
Ga0314794_123507_3_188	3300034669	Soil	RVITLAISDADWKALRAVQPEPVDWLKRTIRDAIDQNAPLSRADAGPERPAVKAAGARAQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084440

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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