Metagenome / Metatranscriptome Family F084439

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084439
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	51 residues
Representative Sequence	MSITSTLVRRAEIRFHEAADVLRPFVGCFWVVTAERDATIRVVPD
Number of Associated Samples	96
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.21 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.96 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (10.714 % of family members)
Environment Ontology (ENVO)	Unclassified (33.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.214 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 43.84% Coil/Unstructured: 56.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01425	Amidase	4.46
PF05787	DUF839	4.46
PF13709	DUF4159	3.57
PF03795	YCII	2.68
PF01738	DLH	2.68
PF07992	Pyr_redox_2	1.79
PF00375	SDF	1.79
PF04542	Sigma70_r2	1.79
PF00072	Response_reg	1.79
PF12779	WXXGXW	0.89
PF08282	Hydrolase_3	0.89
PF08533	Glyco_hydro_42C	0.89
PF08031	BBE	0.89
PF06897	DUF1269	0.89
PF03358	FMN_red	0.89
PF12681	Glyoxalase_2	0.89
PF13520	AA_permease_2	0.89
PF02687	FtsX	0.89
PF12697	Abhydrolase_6	0.89
PF13442	Cytochrome_CBB3	0.89
PF12867	DinB_2	0.89
PF03466	LysR_substrate	0.89
PF14041	Lipoprotein_21	0.89
PF03807	F420_oxidored	0.89
PF01814	Hemerythrin	0.89
PF01431	Peptidase_M13	0.89
PF02954	HTH_8	0.89
PF13360	PQQ_2	0.89
PF02371	Transposase_20	0.89
PF06078	DUF937	0.89
PF06127	Mpo1-like	0.89
PF13620	CarboxypepD_reg	0.89
PF00486	Trans_reg_C	0.89
PF11138	DUF2911	0.89
PF06983	3-dmu-9_3-mt	0.89
PF00310	GATase_2	0.89
PF00903	Glyoxalase	0.89
PF12695	Abhydrolase_5	0.89
PF08546	ApbA_C	0.89
PF03551	PadR	0.89
PF02627	CMD	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3211	Secreted phosphatase, PhoX family	General function prediction only [R]	4.46
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	4.46
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.68
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.79
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.79
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.79
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.79
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.89
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.89
COG4539	2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)	Lipid transport and metabolism [I]	0.89
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.89
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.89
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.89
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.89
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.89
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.89
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.89
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.89
COG1874	Beta-galactosidase GanA	Carbohydrate transport and metabolism [G]	0.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.89
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.89
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.89
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.89
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.89
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.57 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.71 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.79 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.89 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.89 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.89 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.89 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.89 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.89 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.89 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22	0.89 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.89 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.89 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.89 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.89 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.89 %
Limnoglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus	0.89 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22	0.89 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Limnoglobus roseus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	0.89 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.89 %
Burkholderia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp.	0.89 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22	0.89 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16832303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp.	1290	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14094791	Not Available	646	Open in IMG/M
3300000550\|F24TB_10128042	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300000891\|JGI10214J12806_12674807	Not Available	572	Open in IMG/M
3300004463\|Ga0063356_102158341	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300004463\|Ga0063356_102271549	All Organisms → cellular organisms → Bacteria → Acidobacteria	827	Open in IMG/M
3300004480\|Ga0062592_100388790	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300004480\|Ga0062592_102434385	All Organisms → cellular organisms → Bacteria → Terrabacteria group	525	Open in IMG/M
3300005289\|Ga0065704_10534133	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300005293\|Ga0065715_10333041	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300005294\|Ga0065705_10625619	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005332\|Ga0066388_105431413	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	646	Open in IMG/M
3300005333\|Ga0070677_10383929	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300005338\|Ga0068868_101850436	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300005340\|Ga0070689_100068015	All Organisms → cellular organisms → Bacteria	2777	Open in IMG/M
3300005343\|Ga0070687_100263015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1078	Open in IMG/M
3300005343\|Ga0070687_101457786	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22	513	Open in IMG/M
3300005354\|Ga0070675_101989895	Not Available	536	Open in IMG/M
3300005365\|Ga0070688_100535903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300005367\|Ga0070667_100786040	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	883	Open in IMG/M
3300005444\|Ga0070694_101696445	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005454\|Ga0066687_10484131	Not Available	729	Open in IMG/M
3300005456\|Ga0070678_100628391	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300005546\|Ga0070696_101992062	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	504	Open in IMG/M
3300005563\|Ga0068855_101124282	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005617\|Ga0068859_100294910	Not Available	1715	Open in IMG/M
3300005718\|Ga0068866_10900137	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005842\|Ga0068858_101505517	Not Available	664	Open in IMG/M
3300005842\|Ga0068858_101762854	Not Available	612	Open in IMG/M
3300005843\|Ga0068860_102019234	Not Available	598	Open in IMG/M
3300005844\|Ga0068862_101488002	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005937\|Ga0081455_10045649	All Organisms → cellular organisms → Bacteria	3810	Open in IMG/M
3300006195\|Ga0075366_10280069	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300006237\|Ga0097621_100147170	All Organisms → cellular organisms → Bacteria → Acidobacteria	2017	Open in IMG/M
3300006358\|Ga0068871_101655556	Not Available	606	Open in IMG/M
3300006577\|Ga0074050_11285215	Not Available	643	Open in IMG/M
3300006845\|Ga0075421_100124544	All Organisms → cellular organisms → Bacteria	3233	Open in IMG/M
3300006852\|Ga0075433_11050928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300006852\|Ga0075433_11943797	Not Available	504	Open in IMG/M
3300006871\|Ga0075434_102367332	Not Available	533	Open in IMG/M
3300006914\|Ga0075436_100428457	Not Available	961	Open in IMG/M
3300006969\|Ga0075419_10187482	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300007004\|Ga0079218_13054587	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300009100\|Ga0075418_12376980	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300009147\|Ga0114129_10104109	All Organisms → cellular organisms → Bacteria	3922	Open in IMG/M
3300009147\|Ga0114129_12335185	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300009156\|Ga0111538_10859210	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300009162\|Ga0075423_12249601	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300010362\|Ga0126377_10869069	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300010362\|Ga0126377_11967265	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300010366\|Ga0126379_11249086	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300010366\|Ga0126379_11558659	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300010366\|Ga0126379_12616150	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300010366\|Ga0126379_12887067	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300010400\|Ga0134122_11578339	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300010400\|Ga0134122_11725527	Not Available	655	Open in IMG/M
3300010403\|Ga0134123_11517495	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300011119\|Ga0105246_10693879	Not Available	891	Open in IMG/M
3300012895\|Ga0157309_10329210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300012897\|Ga0157285_10382262	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300012899\|Ga0157299_10161094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300012906\|Ga0157295_10185650	Not Available	652	Open in IMG/M
3300012948\|Ga0126375_10012027	All Organisms → cellular organisms → Bacteria	3710	Open in IMG/M
3300012958\|Ga0164299_10125639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1379	Open in IMG/M
3300012988\|Ga0164306_11576399	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300014318\|Ga0075351_1131764	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300014326\|Ga0157380_10222875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1688	Open in IMG/M
3300014326\|Ga0157380_10802482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	958	Open in IMG/M
3300015200\|Ga0173480_10554419	Not Available	698	Open in IMG/M
3300015371\|Ga0132258_10329291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3769	Open in IMG/M
3300016357\|Ga0182032_11115115	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300016371\|Ga0182034_11480833	Not Available	594	Open in IMG/M
3300016445\|Ga0182038_12153344	Not Available	506	Open in IMG/M
3300018072\|Ga0184635_10390693	Not Available	528	Open in IMG/M
3300018481\|Ga0190271_10706228	All Organisms → cellular organisms → Bacteria → Proteobacteria	1131	Open in IMG/M
3300021090\|Ga0210377_10064094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2513	Open in IMG/M
3300021363\|Ga0193699_10490389	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300021559\|Ga0210409_10368595	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300021560\|Ga0126371_13335928	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300022756\|Ga0222622_11316651	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300025926\|Ga0207659_11196449	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300025927\|Ga0207687_10150426	All Organisms → cellular organisms → Bacteria → Acidobacteria	1776	Open in IMG/M
3300025961\|Ga0207712_10528935	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300026023\|Ga0207677_10500062	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300026023\|Ga0207677_11306234	Not Available	666	Open in IMG/M
3300026075\|Ga0207708_10310008	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300026095\|Ga0207676_12532313	Not Available	510	Open in IMG/M
3300026121\|Ga0207683_11945736	Not Available	536	Open in IMG/M
3300027821\|Ga0209811_10243140	Not Available	686	Open in IMG/M
3300027880\|Ga0209481_10768365	Not Available	501	Open in IMG/M
3300027886\|Ga0209486_10836380	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300028380\|Ga0268265_11355889	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300028380\|Ga0268265_12496204	Not Available	523	Open in IMG/M
3300031226\|Ga0307497_10172125	Not Available	917	Open in IMG/M
3300031562\|Ga0310886_10623681	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031679\|Ga0318561_10317028	Not Available	854	Open in IMG/M
3300031716\|Ga0310813_10207731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	1609	Open in IMG/M
3300031719\|Ga0306917_11049302	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300031858\|Ga0310892_10409445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	885	Open in IMG/M
3300031879\|Ga0306919_11533429	Not Available	501	Open in IMG/M
3300031892\|Ga0310893_10497303	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031896\|Ga0318551_10547068	Not Available	666	Open in IMG/M
3300031908\|Ga0310900_10448224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	992	Open in IMG/M
3300031911\|Ga0307412_11389424	All Organisms → cellular organisms → Bacteria → Proteobacteria	635	Open in IMG/M
3300031940\|Ga0310901_10459432	All Organisms → cellular organisms → Bacteria → Terrabacteria group	564	Open in IMG/M
3300031941\|Ga0310912_10730918	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300032003\|Ga0310897_10505973	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300032075\|Ga0310890_11204620	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300032180\|Ga0307471_102350684	Not Available	673	Open in IMG/M
3300032180\|Ga0307471_103830723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300032180\|Ga0307471_104032591	Not Available	519	Open in IMG/M
3300033412\|Ga0310810_10088789	All Organisms → cellular organisms → Bacteria	3708	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.93%
Host-Associated	Host-Associated	41.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.25%
Plants	Host-Associated → Plants	41.07%
Aquatic	Environmental → Aquatic	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.75%
Roots	Host-Associated → Plants → Roots	2.68%
Sediment	Environmental → Aquatic → Sediment	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.07%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	8.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.71%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01428220	2088090014	Soil	MSISSTVVDRAEIRFHAAAPALQPYVGCFWVISAQCGATVRIVPDGTTSIA
ICChiseqgaiiFebDRAFT_140947911	3300000363	Soil	MSISSTLVDRAEIRFHEAAESLRSHVGCFWVVIAERDAMIRVVPDGSTAIS
F24TB_101280421	3300000550	Soil	MSISSTRVQCAEIRFHEAADALRPFVGCFWVVTTTRRATIRVVPDGTTAISIQLQKSQAPEWFLRG
JGI10214J12806_126748072	3300000891	Soil	MSVTSTLVHRAETRFVEAAAPLRPYVGCFWVITADRGARIQIVPDASTSVSIELRNGRPSAWFLRG
Ga0063356_1021583412	3300004463	Arabidopsis Thaliana Rhizosphere	MSITGTLVHRAEIRFREAADVLRPHVGCFWVITAEQDATIRVVPDASTAISIQLQNGRPSEWFLRG
Ga0063356_1022715491	3300004463	Arabidopsis Thaliana Rhizosphere	MSITSTVVYRAETRFIEAVDALRPYVGCFWVITAKRGAMIRVVPDT
Ga0062592_1003887901	3300004480	Soil	MSITSTVVDGADSEFIQAADVLRPFVGCFWVITAQRGATIRVVPDGTTSISIELR
Ga0062592_1024343851	3300004480	Soil	MSISSTLVDRAEIRFHEAPAALRAFVGCFWVVTAEAGAMIRVVPDGSAAISIQLDDIEVAGWVLR
Ga0065704_105341331	3300005289	Switchgrass Rhizosphere	MSISSTLFDRAEIRFQPAADVLHPFVGCFWIITAEPGSTIRVVPDSSTAIAIQFQ
Ga0065715_103330412	3300005293	Miscanthus Rhizosphere	MSISSTVVHRAEIRFQEAAEGLQSFVGCFWVITAERSATIRMVPDGS
Ga0065705_106256192	3300005294	Switchgrass Rhizosphere	MSISSTLFDRAEIRFQPAADVLHPYVGCFWIITAEPDSTIRVVPDSSTAIAIQFQNDRKSEWL
Ga0066388_1054314131	3300005332	Tropical Forest Soil	MSISSTVVHRAEIRFHEATEVLRPFVGCFWVVTAEQDATIRAVPDG
Ga0070677_103839291	3300005333	Miscanthus Rhizosphere	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMTAQRDATIRVVPDGSTAISIQLQKGHTAEWSL
Ga0068868_1018504361	3300005338	Miscanthus Rhizosphere	MSITSTVVDRAESRFIEAADVLRPFVGCFWIITAERGATIRVVPDASTAISVQLQDDWSPGWVLR
Ga0070689_1000680151	3300005340	Switchgrass Rhizosphere	VSITSTLVHRAEIRFHEAADVLRPYVGCFWVITAERDATLRI
Ga0070687_1002630151	3300005343	Switchgrass Rhizosphere	VSITSTLVHRAEIRFHEAADVLRPYVGCFWVITAERDATLRIVPDGSTSISIELQGR
Ga0070687_1014577861	3300005343	Switchgrass Rhizosphere	MSISSTLVERAEIRFHEAAEALRDHVGCFWVVTAEQDGLLRVV
Ga0070675_1019898951	3300005354	Miscanthus Rhizosphere	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVVTAQPDASIRVVPDGSTSISIQLQQGHSAEW
Ga0070688_1005359031	3300005365	Switchgrass Rhizosphere	MSITSTVVDRAESRFIEAADVLRPFVGCFWIITAEQGATIRVVPDGST
Ga0070667_1007860402	3300005367	Switchgrass Rhizosphere	VSITSTVVHRAEIQFHEAAEALRPYVGCFWVATAERDATIRVVPDGSTAISIELQKGRP
Ga0070694_1016964452	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSISSTVVHRAEIRFQEAAEGLQSFVGCFWVITAERSATIRMVPDGSTAISIQLQNG
Ga0066687_104841313	3300005454	Soil	MSILSTHVQRAEIRFHEAAEPLRAAVGCFWVVTAERGAVLRMVPDGSTAISIGFQS
Ga0070678_1006283911	3300005456	Miscanthus Rhizosphere	MSISSTLVDRAQIQFHEAAEALRPFVGCFWVITAEQGATIRVVPDGS
Ga0070696_1019920622	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSVTGTVVDSAETRFVEAAAVLQPYVGCFWVITAQRGATIRVVPDGS
Ga0068855_1011242821	3300005563	Corn Rhizosphere	MSISSTVVDRAEIKFHEATDVLRPFVGCFWVVTAEQDAT
Ga0068859_1002949101	3300005617	Switchgrass Rhizosphere	MSITSTVVHRAESRFIEAADVLRPFVGCFWIITAEQGATIRVVPDGSTAI
Ga0068866_109001371	3300005718	Miscanthus Rhizosphere	MSISSTLVHRAEIEFHEAAEPLRPFVGCFWVMTAQRDATIRVVPDGST
Ga0068858_1015055171	3300005842	Switchgrass Rhizosphere	VSITSTLVDRAELRFHEAADVLRPYVGCFWVITAERDATIRIVPDASTAISIELQGRPS
Ga0068858_1017628542	3300005842	Switchgrass Rhizosphere	VSITSTLVHRAEIRFHEAADVLRPYVGCFWVITAEG
Ga0068860_1020192341	3300005843	Switchgrass Rhizosphere	MSVGSTLVRGAEIRFQKAAEQLRPFVGCFWVITADRG
Ga0068862_1014880021	3300005844	Switchgrass Rhizosphere	MSITSTLVHRAEIQFHQAADVLRPYVGCFWVITADPDATIRIVPDASTSISVELQGRPAE
Ga0081455_100456495	3300005937	Tabebuia Heterophylla Rhizosphere	MTTITSTVVHQAEIRFREADVALRPYVGCFWVISAEQDATIRIVPDGGTSISTDLPNGRSSG
Ga0075366_102800693	3300006195	Populus Endosphere	MSISSTLVQRAQIRFHEPADALRPFVGCFWVLTAERGAA
Ga0097621_1001471702	3300006237	Miscanthus Rhizosphere	MSITSTLVERAEIQFREADAALRPFVGCFWTITAQPNA
Ga0068871_1016555562	3300006358	Miscanthus Rhizosphere	MSITSTLVERAEIQFREADAALRPFVGCFWTITAQP
Ga0074050_112852151	3300006577	Soil	VSITSTVVQGAETRFIEAADVLRPFVGCFWIITADRGATIRVV
Ga0075421_1001245445	3300006845	Populus Rhizosphere	MSISSTLVERAQIGFHEAAEPLRAFVGCFWVITAERDAVLRVVPDGSTTISILLQQDQ
Ga0075433_110509281	3300006852	Populus Rhizosphere	MSITSTIVHRAEIRFHEAADVLRPFVGCFWVVTADRGATI
Ga0075433_119437972	3300006852	Populus Rhizosphere	MSITSTVVQRAEIQFLEAPEALRRFVGCFWVVTADRDATIR
Ga0075434_1023673322	3300006871	Populus Rhizosphere	MSITSTVVQRAEIQFLEAPEALRRFVGCFWAVTADRDATIRIVPDATTSIS
Ga0075436_1004284571	3300006914	Populus Rhizosphere	MSISSTLVHGAEIRFQEAADALRPYVGCFWVIRAERDAIIRVVPDGT
Ga0075419_101874821	3300006969	Populus Rhizosphere	MSVTSTVVDRVETRFVEAAAPLRPYVGCFWVITAERGARIQIVPDASTSISIELRRDRSSGWFL
Ga0079218_130545872	3300007004	Agricultural Soil	MSISSTLVDRAEIEFHEAAGPLRPFVGCFWVMTAQRDATIRVV
Ga0075418_123769802	3300009100	Populus Rhizosphere	MSISSTLVHRAEIRFVEAAVPLRPFVGCFWVVTAKQDSTIRVVPDG
Ga0114129_101041098	3300009147	Populus Rhizosphere	MSVTSTVVDRVETRFVEAAAPLRPYVGCFWVITAERGARIQIVPDAS
Ga0114129_123351852	3300009147	Populus Rhizosphere	MSISSTLVHRAEIAFHEAAEPLRPFVGCFWVVTAQSDATIRVVPD
Ga0111538_108592103	3300009156	Populus Rhizosphere	MSITSTVIDGADTRFIEAADVLRPYVGCFWVITANRGATIRVVPDASTSISLE
Ga0075423_122496011	3300009162	Populus Rhizosphere	MSITGTVVDSAETRFVEAAAVLQPYVGCFWVITAQRGATIRVVPDGSTAIFVERRENRS
Ga0126377_108690691	3300010362	Tropical Forest Soil	MSISSTAVDRAEIRFHEATEVLRPFVGCFWVVTAEHGATIR
Ga0126377_119672652	3300010362	Tropical Forest Soil	MSITSTVVSRAETRFIEAVDALRPYVGCFWVITAQR
Ga0126379_112490862	3300010366	Tropical Forest Soil	MSISTTLVDRAEIRFQEAANALRPYVGCFWVLTAECGATIRVVPDGTAAISI
Ga0126379_115586592	3300010366	Tropical Forest Soil	MTTIASTVVNHAEIRFREAAVALRPYVGCFWVITAERDAMIRMVPDGTTSISAELEDRRTQD
Ga0126379_126161502	3300010366	Tropical Forest Soil	MSISSTLIDRAEIRFEEAATELRPYVGCFWVVTAERGATIHVVPDGTTAISVQLQ
Ga0126379_128870671	3300010366	Tropical Forest Soil	MSITSTLVRRAEIRFHEAADVLRPFVGCFWVVTAERDATIRVVPD
Ga0134122_115783391	3300010400	Terrestrial Soil	MSSISTTLLERAEIRFQEAADALRRYVGCFWVVTAESDATIRVVP
Ga0134122_117255272	3300010400	Terrestrial Soil	MSITSTIVHHAEIRFHEATEALRPFVGCFWVVTAERDAMLRVVPDGSTSISIQLQDRGAS
Ga0134123_115174951	3300010403	Terrestrial Soil	MSISSTVVHRADIRFHEAADALRPFVGCFWVMTAQRDATIRLVADGSTTISIQLQS
Ga0105246_106938791	3300011119	Miscanthus Rhizosphere	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMSAQRDATIRVVPDGSTAISIQLQKGHTAEWL
Ga0157309_103292101	3300012895	Soil	MSITSTVVDRAESRFIEAADVLRPFVGCFWIITAERGATIRVVPDASTAISVQ
Ga0157285_103822621	3300012897	Soil	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMTAQREATIRVVPDGSTAISIQ
Ga0157299_101610941	3300012899	Soil	MSISSTLVDRADIRFHEAAGALQPFVGCFWVVTAERGATIRVVPD
Ga0157295_101856501	3300012906	Soil	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMTAQRDAKIRV
Ga0126375_100120275	3300012948	Tropical Forest Soil	MTTITSTVVHQAEIKFREADVALRPYVGCFWVISAERDATIRIVPDGSTSISTELRNGRSSGW
Ga0164299_101256392	3300012958	Soil	MSISSTLVQGADIRFQEAAHVLRPHVGCFWVITAAKGAVIRAVPDGSTAISIQLQNDGRTEWSLR
Ga0164306_115763991	3300012988	Soil	MSISSTAVHRAEIKFHEATEVLRPFVGCFWVVTAEQGATIRAVPDGS
Ga0075351_11317642	3300014318	Natural And Restored Wetlands	VSVTSTVVDRAETRFIKADEALQPYVGCFWVITVERGATIRVVPDGTTSIS
Ga0157380_102228753	3300014326	Switchgrass Rhizosphere	MSISSTFVDRAEIRFHEAAGALQPFVGCFWVVTAERGATIRVVPDGSTAISIQ
Ga0157380_108024821	3300014326	Switchgrass Rhizosphere	MSITSTVVDRAESRFIEAADVLRPFVGCFWIITAERGATIR
Ga0173480_105544191	3300015200	Soil	MSIISTVVHRAEIRFHEAAEALRPYVGCFWVVTADQDATIHVVPDGSTAISIELRQGWRS
Ga0132258_103292911	3300015371	Arabidopsis Rhizosphere	MSITSTVVHRAESRFIEAADVLRSFVGCFWIITAERGATMRVVPDGSTAISVQLQDDGRSGWSL
Ga0182032_111151151	3300016357	Soil	MSITSTVVRQAEIQFREAAAGLQPYVGCFWTISAERDATIRIVPDLSTSISTELTNG
Ga0182034_114808331	3300016371	Soil	MSVTSTSVHRAQTRFIQATDELRPYVGCFWIVTAEQGATLRIVPDGTTSISIELRQHSSS
Ga0182038_121533442	3300016445	Soil	MSISSTLVDRAQIEFREAAEALRPFVGCFWVITAERGGTIRVVPDGSTAIFI
Ga0184635_103906932	3300018072	Groundwater Sediment	MSITSTLVHRAEIQFHQAADVLRPYVGCFWVITAERDATIRIVPDASTAISV
Ga0190271_107062281	3300018481	Soil	MSISSTVVDRADIRFHVATAALQPYVGCFWVITAQCGSTVRVVPDGTTSI
Ga0210377_100640941	3300021090	Groundwater Sediment	MSISSTVVDRADIRFHAAAPALLPYVGCFWVITAECGATVRV
Ga0193699_104903891	3300021363	Soil	MSVGSTLVRGAEIRFQEAAEKLRPFVGCFWVITANG
Ga0210409_103685953	3300021559	Soil	MSISSTLVHGAEIRFQEAADALRPYVGCFWVITAERDAIIRVVPDGSTAISIQLQKTRPAGWS
Ga0126371_133359281	3300021560	Tropical Forest Soil	MTISSTHIDRADIQFQQAADALKPFTGCFWTVTAERGATIRIVPDGTAAVG
Ga0222622_113166511	3300022756	Groundwater Sediment	MSITSTLVHRAEIRFHQAAEVLRPYVGCFWVITAERDATIRI
Ga0207659_111964491	3300025926	Miscanthus Rhizosphere	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMTAQRDATIRVVPDGSTAISIQLQKGHTA
Ga0207687_101504261	3300025927	Miscanthus Rhizosphere	MSISSTLVDRAQIQFHEAAEALRPFVGCFWVITAEQGATIRVVPDGSTAISLQLQEGLPS
Ga0207712_105289353	3300025961	Switchgrass Rhizosphere	MSISSTLVDRAQIQFHEAAEALRPFVGCFWVITAEQGATIRVVPDGST
Ga0207677_105000621	3300026023	Miscanthus Rhizosphere	MSISSTVVHRAEIRFQEAAEGLQSFVGCFWVITAERSATIRMVPDGSTAISIQL
Ga0207677_113062341	3300026023	Miscanthus Rhizosphere	MSITSTVVDRAESRFIEAADVLRPFVGCFWIITAERGATIRVVPDASTAISVQLQDDWSPGWVLRSP
Ga0207708_103100081	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSITGTVVDSAETRFVEAAAVLQPYVGCFWVITAQRG
Ga0207676_125323131	3300026095	Switchgrass Rhizosphere	MSITSTVVDRAESRFIEAADVLRPFVGCFWIITAERG
Ga0207683_119457361	3300026121	Miscanthus Rhizosphere	MSISSTLVDRAQIQFHEAAEALRPFVGCFWVITAEQGATIR
Ga0209811_102431402	3300027821	Surface Soil	VSITSTVVHRAEIRFHEAADVLRPYVGCFWVITAERDATIRIVPDGSTAISV
Ga0209481_107683652	3300027880	Populus Rhizosphere	MSISSTLVHRADIQFHEAVEALRPFVGCFWVVTAQRGATIR
Ga0209486_108363801	3300027886	Agricultural Soil	MSISSTLVDRAEIEFHEAHDALRPFVGCFWVITAQPDATIRVVPDGSTAISI
Ga0268265_113558891	3300028380	Switchgrass Rhizosphere	MSISSTLVHRAEIAFHEADEPLRPFVGCFWVVTAQPDASIRVVPDGSTSISIQLQQGHS
Ga0268265_124962041	3300028380	Switchgrass Rhizosphere	MSITSTLVHRAEIQFHQAADVLRPYVGCFWVITADPDATIRIVPDASTSISVELQGQPAEWL
Ga0307497_101721252	3300031226	Soil	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMTAQRDATIRVVPDGSTAISIQLE
Ga0310886_106236811	3300031562	Soil	MSITSTVIDGADTRFIEAADVLRPYVGCFWVITANRGATIRVVPDASTSISLEVRTGWSS
Ga0318561_103170281	3300031679	Soil	MSVTSTSVHRAQTRFIQATDELRPYVGCFWIVTAEQGATLRIVPDGTTSISIELRQHSSSDWVLRGPLLKPAVRRFP
Ga0310813_102077312	3300031716	Soil	MSISSTLVDRAEIRFHEAPAALRAFVGCFWVVTAEAGAMIRVVPDGSAAISIQLDDIEVARW
Ga0306917_110493021	3300031719	Soil	MTISSTRMDRAPIRFQEAPDALRPYVGCFWIVTPKAGARIRVVPDGTTAIFAEL
Ga0310892_104094453	3300031858	Soil	MSITSTLIDGADIRFREAADVLRPYVGCFWVITAQRGATIRVVPDGSTAISIR
Ga0306919_115334291	3300031879	Soil	MSVTSTSVHRAQTRFIQATDELRPYVGCFWIVTAEQGATLRIVPDGTTSISIELRQHSSSDWVL
Ga0310893_104973031	3300031892	Soil	MSISSTLIDRAEIRFQPSADVLHPFVGCFWVITAEPDSTIRVI
Ga0318551_105470681	3300031896	Soil	MSVTSTSVHRAQTRFIQATDELRPYVGCFWIVTAEQGATLRIVPDGTTSISIELRQHSSSDWV
Ga0310900_104482241	3300031908	Soil	MEEVSDMSVTSTVVHRAETRFVEAAAPLRPYVGCFWVITADRGARVQIVPDASTSVSIELRNGRPSAWFLR
Ga0307412_113894242	3300031911	Rhizosphere	MSISSTVLDRADIRFHAAIPVLQPYVGCFWVITAERGATMRTVPDGTTSIAF
Ga0310901_104594322	3300031940	Soil	LSISSTLVDRAEIRFHEAPAALRAFVGCFWVVTAEAGAMIRVVPD
Ga0310912_107309181	3300031941	Soil	MSISSTLVDRAQIEFREAAEALRPFVGCFWVITAE
Ga0310897_105059732	3300032003	Soil	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMTAQRDATIRVVPDGSTA
Ga0310890_112046201	3300032075	Soil	MSISSTLVDRAEIEFHEAAEPLRPFVGCFWVMTAKRDATI
Ga0307471_1023506841	3300032180	Hardwood Forest Soil	MSISSTLVHGADIRFQEAADALRPYVGCFWVITADRDAIIRVVPDGTTAISIQ
Ga0307471_1038307232	3300032180	Hardwood Forest Soil	MSISSTLVQGADIRFVEAASALRSHVGCFWIITAERGAFMRIV
Ga0307471_1040325912	3300032180	Hardwood Forest Soil	MSISSTFVRGAEIRFHEAADALRPFVGCFWVVTAERDATIRVVPDGSTAISIQLQG
Ga0310810_100887894	3300033412	Soil	MTITSTVVERAETRFIEAAEALRPFVGCFWVISAAQGALIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084439

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences