Metagenome / Metatranscriptome Family F084438

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084438
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	134 residues
Representative Sequence	SAALFETVGRIDRELFATDTSGYTQYGRAYLSLQSAVPDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALANIRAFHLRVTRDVLRRLEHDRRSFADVASFDCH
Number of Associated Samples	91
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.21 %
% of genes from short scaffolds (< 2000 bps)	90.18 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.107 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.643 % of family members)
Environment Ontology (ENVO)	Unclassified (31.250 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.107 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.21% β-sheet: 3.70% Coil/Unstructured: 53.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00069	Pkinase	3.57
PF08327	AHSA1	2.68
PF05163	DinB	2.68
PF13620	CarboxypepD_reg	1.79
PF07676	PD40	1.79
PF00754	F5_F8_type_C	0.89
PF00561	Abhydrolase_1	0.89
PF01061	ABC2_membrane	0.89
PF13413	HTH_25	0.89
PF07638	Sigma70_ECF	0.89
PF00437	T2SSE	0.89
PF02518	HATPase_c	0.89
PF12704	MacB_PCD	0.89
PF13807	GNVR	0.89
PF13202	EF-hand_5	0.89
PF13492	GAF_3	0.89
PF08874	DUF1835	0.89
PF00144	Beta-lactamase	0.89
PF05974	DUF892	0.89
PF01565	FAD_binding_4	0.89
PF13360	PQQ_2	0.89
PF13350	Y_phosphatase3	0.89
PF05572	Peptidase_M43	0.89
PF13376	OmdA	0.89
PF01364	Peptidase_C25	0.89
PF03724	META	0.89
PF05402	PqqD	0.89
PF00106	adh_short	0.89
PF00072	Response_reg	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	14.29
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.68
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.89
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.89
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.89
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.89
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.11 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.11 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.11 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	87.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	86.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	86.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	86.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.89 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	86.61 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	86.61 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.89 %
Bradyrhizobium vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	86.61 %
Mesorhizobium sp. URHC0008	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. URHC0008	0.89 %
Bradyrhizobium vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Unclassified	root	N/A	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_15876824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300000956\|JGI10216J12902_100337340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1151	Open in IMG/M
3300000956\|JGI10216J12902_100456409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1227	Open in IMG/M
3300000956\|JGI10216J12902_108520333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300001431\|F14TB_100154115	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300004157\|Ga0062590_101611136	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300004480\|Ga0062592_100672091	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300004480\|Ga0062592_101032932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300005093\|Ga0062594_103229230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. URHC0008	511	Open in IMG/M
3300005180\|Ga0066685_10179439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1448	Open in IMG/M
3300005328\|Ga0070676_11215311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300005331\|Ga0070670_101975834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300005347\|Ga0070668_100074240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2653	Open in IMG/M
3300005353\|Ga0070669_101392692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300005354\|Ga0070675_100421174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1194	Open in IMG/M
3300005355\|Ga0070671_101845066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300005356\|Ga0070674_101494172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300005441\|Ga0070700_100632006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300005441\|Ga0070700_101142003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300005441\|Ga0070700_101356657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300005444\|Ga0070694_100605265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300005713\|Ga0066905_101423501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300005843\|Ga0068860_101815493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300005937\|Ga0081455_11053795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300006195\|Ga0075366_10365030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300006852\|Ga0075433_11267893	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300006880\|Ga0075429_101442937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300006903\|Ga0075426_11192625	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300006953\|Ga0074063_13380310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300009089\|Ga0099828_11685635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300009100\|Ga0075418_11675277	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300009156\|Ga0111538_10138410	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300009177\|Ga0105248_11390575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300009553\|Ga0105249_12475545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300010399\|Ga0134127_11439875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300010399\|Ga0134127_12286748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300010401\|Ga0134121_11179938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300012133\|Ga0137329_1059329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300012354\|Ga0137366_10810623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300012359\|Ga0137385_11656678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300012900\|Ga0157292_10177168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300012902\|Ga0157291_10397146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300012948\|Ga0126375_10433599	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300012957\|Ga0164303_11217449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300014325\|Ga0163163_10091399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3058	Open in IMG/M
3300014326\|Ga0157380_11164308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300014969\|Ga0157376_12261597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300015200\|Ga0173480_10310497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300015257\|Ga0180067_1114684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300015258\|Ga0180093_1069948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300015371\|Ga0132258_10082214	All Organisms → cellular organisms → Bacteria → Acidobacteria	7517	Open in IMG/M
3300015371\|Ga0132258_10322284	All Organisms → cellular organisms → Bacteria	3810	Open in IMG/M
3300015372\|Ga0132256_100313920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1654	Open in IMG/M
3300015373\|Ga0132257_104192264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300015373\|Ga0132257_104450306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300015374\|Ga0132255_101274961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1108	Open in IMG/M
3300015374\|Ga0132255_104311701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300017965\|Ga0190266_11159614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300018067\|Ga0184611_1014737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2311	Open in IMG/M
3300018067\|Ga0184611_1346294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300018422\|Ga0190265_13081431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300018429\|Ga0190272_11007742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300018469\|Ga0190270_11274750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300018476\|Ga0190274_10053903	All Organisms → cellular organisms → Bacteria	2928	Open in IMG/M
3300018476\|Ga0190274_11047757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300018476\|Ga0190274_11459009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	775	Open in IMG/M
3300018481\|Ga0190271_12274754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300018482\|Ga0066669_10423579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300018920\|Ga0190273_11848369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300019356\|Ga0173481_10421962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300019362\|Ga0173479_10062516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1263	Open in IMG/M
3300019377\|Ga0190264_10656135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300019377\|Ga0190264_11359641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300019458\|Ga0187892_10489361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300021080\|Ga0210382_10541633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300021082\|Ga0210380_10429843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300022893\|Ga0247787_1081013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300022915\|Ga0247790_10201368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300022915\|Ga0247790_10216181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300023102\|Ga0247754_1100991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300023260\|Ga0247798_1030905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300025919\|Ga0207657_11385510	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300025925\|Ga0207650_10648241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300025930\|Ga0207701_10135557	All Organisms → cellular organisms → Bacteria	2188	Open in IMG/M
3300025930\|Ga0207701_10870712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300025933\|Ga0207706_11089360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300025941\|Ga0207711_10725795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300025961\|Ga0207712_11493239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300026075\|Ga0207708_11806390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300026118\|Ga0207675_100096161	All Organisms → cellular organisms → Bacteria → Proteobacteria	2788	Open in IMG/M
3300027675\|Ga0209077_1131787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300028380\|Ga0268265_12034063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300028608\|Ga0247819_10911196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300028799\|Ga0307284_10292071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300028812\|Ga0247825_11051412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300031226\|Ga0307497_10723159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300031226\|Ga0307497_10781142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300031562\|Ga0310886_11017156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300031716\|Ga0310813_11067370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300031847\|Ga0310907_10751343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300031908\|Ga0310900_10387947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1057	Open in IMG/M
3300031908\|Ga0310900_10439313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300032012\|Ga0310902_10052083	All Organisms → cellular organisms → Bacteria → Proteobacteria	2005	Open in IMG/M
3300032012\|Ga0310902_10159845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1285	Open in IMG/M
3300032012\|Ga0310902_10411322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	863	Open in IMG/M
3300032012\|Ga0310902_10538374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300032144\|Ga0315910_11012012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300032179\|Ga0310889_10370240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300032211\|Ga0310896_10948172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300033807\|Ga0314866_085771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300034147\|Ga0364925_0171728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.64%
Host-Associated	Host-Associated	30.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.50%
Plants	Host-Associated → Plants	30.36%
Aquatic	Environmental → Aquatic	7.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.93%
Sediment	Environmental → Aquatic → Sediment	4.46%
Freshwater	Environmental → Aquatic → Freshwater	2.68%
Roots	Host-Associated → Plants → Roots	1.79%
Cave	Environmental → Terrestrial → Cave	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.82%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.46%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.57%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012133	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_158768241	3300000550	Soil	TDTSGYTQFGRAYLSLQSDVPDAQFIAXXXXXAAEFGVEYTPVVSGAPSLFQGGAAFPGNDWALNPRGEEYLSRIPPQSHRLLARIRAFHLRATQEVLRKLEGHNGRPQEDVVSFDSR*
JGI10216J12902_1003373401	3300000956	Soil	PELFETDTSGYTQFGRAYLSLQSAVPDAQFIAGYVRAAAEFGVQYTPIVEGMPSLFQGGAAFPGNDWTVSTRGEEYLSRIPPRSHRALGRVRAFHLRITQEVLRRLDRHDNRSHDEVMSFDCR*
JGI10216J12902_1004564091	3300000956	Soil	DPELFSTDTSGYTQFGRAYLSLQSAVPDEQFIAGYVQAAHEFNVEYTPVVGGVPSLFLGGAAFPGNDWTVDTRGEGYLSRIPPQSHPALGKIRAFHLRATREVLRRLGHPGNRWHGDVVSFSCDNSPRT*
JGI10216J12902_1085203332	3300000956	Soil	PPLATSAALFETVGRIDPELFETDTSGYTQFGRAYLSLQSAVPDAQFISGYVRAAAKFGVEYTPIVNGAPSLFQGGAAFPGNDWTVNTRGEEYLSRIPSQSHHALRRIRAFHLRVTQEVLGRLASSDKRSAEAAVSFDCR*
F14TB_1001541152	3300001431	Soil	MNDHVAKPIDPAALFETVGRIDPELFATDTSGYTQFGRAYLSLQSDVSNERFIEGYRRAAEAFGVEYTPVINGTPSLFQGGAAFPGNDWTVNTRGEEYLIRIPERSHHALARIRAFHLRVTRDVLXXLEHDRRPFADVASFDCR*
Ga0062590_1016111362	3300004157	Soil	FETDTSGYTQYGRAYLSLQSDVSDARFISGYVRAANEFGVEYTPIVNGVPSLFKGGAAFPGNDWIASPRGEDYLARIPEESHRALARIRAFVLRVTREVEHKLERRDDRHDNPISFDCK*
Ga0062592_1006720911	3300004480	Soil	DTSGYTQYGRAYLSLQSDVSDDRFIAGYVQAAGVAGVEYTPVVNGHPSLFQGGAAFPGNDWTVSREGQDYLSRIPPQSHRALARIRAFHLEVTQGVLRKLAHGNDKRAIDEVSSFQCR*
Ga0062592_1010329322	3300004480	Soil	VLNFPTVPTMAQSAALFETVGAIDPELFETDTSGYTQYGRAYLSLQSAVPDAQFIAGYVEAAEQAGVEYTPIVNGEPSLFQGSAGFPGNDWTASPHGEEYLDRIPAQSHEALGQIRDFHLRVIRRVLSKIKHSHSHEVTRFKCR*
Ga0062594_1032292301	3300005093	Soil	ARSAALFRLVGRIDPELFETDTSGYTQYGRAYLSLQSDVPDAQFISGYVRAANEFGVEYTPVVNGVPSLFKGGAAFPGNDWIASPRGEDYLARIPEESHRALARIRAFVLRVTREVEHKLERRDDRHDNPISFDCK*
Ga0066685_101794392	3300005180	Soil	VVLNFPAPPPLAQSAALFEAVGRIDPNLFSTDTSGYTQYGRAYLSLESAVPDAEFIAGYVQAAQEFGVEYTPIVDGQPSLFQGGAAFPGNNWRRNPGGEQYLSRIPAQSHEALGQLRAFHLRVTSEVLKRLGHGNDKHDEREVTQFSCR*
Ga0070676_112153111	3300005328	Miscanthus Rhizosphere	YVVLNFATPPPLAASAALFETVGRIDRELFATDTSGYTQYGRAYLSLQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN*
Ga0070670_1019758342	3300005331	Switchgrass Rhizosphere	DTSGYTQYGRAYLSLQSNVSDARFIAGYVEAARVAGVEYTPVVNGQPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR*
Ga0070668_1000742402	3300005347	Switchgrass Rhizosphere	ELFATDTSGYTQYGRAYLSLQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN*
Ga0070669_1013926921	3300005353	Switchgrass Rhizosphere	RSAALFRTVGRIDPELFETDTSGYTQYGRAYLSLQSAVPDEQFIAGYLRAAAEAGVEYTPIINGAPSLFQGGAAFPGNDWTLSTQGEEYLSRIPPQSHRALGRIRAFHLRATQDVLRNLEHHGHRSPDDVVSFECR*
Ga0070675_1004211741	3300005354	Miscanthus Rhizosphere	FATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPARSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR*
Ga0070671_1018450661	3300005355	Switchgrass Rhizosphere	FRTDTSGYTQFGRAYLSLESAVSDTRFIAGYVEAARRAGVEYTPIVNGQPALFQGGAAFPGNDWIQNPAGQEYLARIPPQSHKALRQLRATQLRITRDVLKKIDHDGHRNGRGEAIQLSCQ*
Ga0070674_1014941721	3300005356	Miscanthus Rhizosphere	GYTQFGRAYLSLQSDVSDERFIAGYVQASLEFNVEYTPIVGGVPSLFLGGAAFPGNDWTVDTRGEDYLSRIPPQSHPALGKIRAFHLRATREVLRRLGDPGNRWHGDVVSFSCDNSQRT*
Ga0070700_1006320062	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	TDTSGYTQFGRAYLSLQSDVPDAQFIAGYVAAAGQLGLQYTPVVNGLPSLFQGGAAFPGNDWTSSTGGQEYLSRIPAQSHRGLARLRAFHLKATQDVLRRLKHPGRGSDNDPIGWVCGQDHD*
Ga0070700_1011420031	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	YVVLNFATPPPLAASAALFETVGRIDPELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR*
Ga0070700_1013566571	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	ALFETVGDIDPQLFSTTTSGYTQYGRSYLSLQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN*
Ga0070694_1006052652	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	NFPAPPPLAQSAALFETVGRIDPELFETDTSGYTQYGRAYLSLESAVPDAQFIAGYVEAARQFGVEYTPIVNGQPSLFQGGAAFPGNDWRQSPGGEEYLSRIPAQSHRALGQIRAFHLSVTRDVLKKLGHGHGHDDHEAIQIKCH*
Ga0066905_1014235011	3300005713	Tropical Forest Soil	PPSISTSAALFKAVGRIDPDLFLTDTSGYTQFGRAYLSLQSDVSEARFVTGYSQAAAEFHVEYTPIVNGAPGLFRGGAAFPGNDWTVNTRGEEYLKRIPVESHRALGRIRTFHLRTTQEVLRRLDRHDGRPIDAVTSFDCK*
Ga0068860_1018154931	3300005843	Switchgrass Rhizosphere	ALFRTVGSINPELFSTDTSGYTQYGRAYLSLRSAVLDEQFIAGYVEAARRFGVEYAPIVNGQPSLFQGGAAFPGNDWTQNPEGQEYLSRIPAQSHRVLRRIRAFHLQTTRDVLRTLERGGRHDGHGDGIRLNCQ*
Ga0081455_110537951	3300005937	Tabebuia Heterophylla Rhizosphere	SAALFRTVGRIDPDLFSPDTSGYTQFGRAYLSLQSDVSDERFIAGYVQAALEFNVEYTPIVGGVPSLFLGGAAFPGNDWTVDTRGEEYLSRIPTQSHRALGRIRAFHLRATQDVLRRLRHHGNEWQDDVVSFSCDNG*
Ga0075366_103650301	3300006195	Populus Endosphere	PPPLAASAALFETVGGIDRELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR*
Ga0075433_112678931	3300006852	Populus Rhizosphere	SGYTQFGRAYLSLQSDVPDEEFIGGYVRAARRFGVEYTPVVNGVPSLFTGGAAFPGNDWTVNPNGEEYLSRIPRQVHRALARIRAFHLRATQEVLRRLDQHDDHRSLPDVTSFDCPR*
Ga0075429_1014429371	3300006880	Populus Rhizosphere	LNFARQPPLAASAALFETVGRIDPELFSTDTSGYTQYGRAYLSLQSAVSDARFIDGYVRAARQFGVEYTPIVNGQPSLFVGGAAFPGNDWTASPSGEEYLARIPAASHRALALIRAFHLRVTREVLHRLEDRERKLPDAAISFACR*
Ga0075426_111926252	3300006903	Populus Rhizosphere	PPPLARSAALFETVGRIDPEIFETDTSGYTQYGRAYLSLQSAVPDAQFIAGYVEAARQFGVEYTPIVDGQPSLFQGGAAFPGNDWTQSPAGQEYLARIPPQSHQALGQIRAFHLRVTREVLKKLGHDDHHGDREAIEFKCR*
Ga0074063_133803102	3300006953	Soil	TDTSGYTQYGRAYLSLQSAVSDQRFIDGYVRAAAAFGVEYTPVISGTPSLFQGGAAFPGNDWTTSTHGEEYLSRIPARSHRALARIRAFHLRVTSEVLRRLEHDRRPFADVASFDCH*
Ga0099828_116856352	3300009089	Vadose Zone Soil	VVLNFDTPPSIQTSADLFETVGRIDPDLFATDTSGYTQYGRAYLSLQSAVPDAQFIAGYVKAAKRFRVEYTPVVNGQPSLFQGGAAFPGNDWTVDEQGEGYLARIPRRSHKALGQIRQFHLRFTRAVLALIAAGDERELGELSCR*
Ga0075418_116752772	3300009100	Populus Rhizosphere	ALFATDTSGYTQFGRAYLSLQSDVSDAQFIAGYVRAAAEFGVEYTPIVNGQPTLFEGGAAFPGNDWVVNPRGEDYLARIPPQSHRALARIRAFHLSATRDVLRRLEHHGDRSRDDVVSFECRQSPL*
Ga0111538_101384104	3300009156	Populus Rhizosphere	TQFGRAYLSLQSAVSDAQFIAGYVQAAREFGVEYTPIVAGQPSLFQGGAAFPGNDWTLSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIEEVSSFQCR*
Ga0105248_113905751	3300009177	Switchgrass Rhizosphere	FPAPPRLGQSAALFKTVGRIDTELFSTDTSGYTQYGRAYVSLRSAVSDEQFIAGYVEAARRFGVEYAPIVNGQPSLFQGGAAFPGNDWTQNPEGQEYLSRIPAKSHRVLRRIRAFHLQTTRDVLRTLERGGRHDGHGDGIRLNCQ*
Ga0105249_124755451	3300009553	Switchgrass Rhizosphere	DSSGYTQYGRAYLSLQSFVPDEQFIAGYVEAASRAGLEYTPIVAGQPSLFEGGADFPGNDWTENPRGQDYLSRIPAVSHDALRRLRRSHLNVVREVLRKLQRNDPAATEFRCR*
Ga0134127_114398751	3300010399	Terrestrial Soil	LAQSAALFETVGRIDPELFETDTSGYTQYGRAYLSLQSAVPDAQFIAGYVEAAHEFGVEYTPIVNGQPSLFQGGAAFPGNDWRQSPGGEEYLSRIPAQSHRALGQIRAFHLRVTRDVLKKLGHGHGHDDHEAIQIKCH*
Ga0134127_122867482	3300010399	Terrestrial Soil	FETDTSGYTQYGRAYLSLQSDVPDAQFISGYVRAANEFGVEYTPVVNGVPSLFKGGAAFPGNDWIASPRGEDYLARIPEQSHRALARIRAFVLRVTREVEHKLERRDDRHDNPISFDCK*
Ga0134121_111799381	3300010401	Terrestrial Soil	VVLNFPAFPKIQASAALFETVGQIDPELFFTDSSGYTQYGRAYLSLQSFVPDAQFISGYVQAAAQAGVEYTPIVAGSPSLFQGGAAFPGNDWTASPHGEEYLSRIPQASHRSLRRIRDYNLRVTREVLGRIQHGRHDPVAFACR*
Ga0137329_10593291	3300012133	Soil	PLRASAALFRTVGDIDPLLFETEFSGYTQFGRAYLSLQSDVPDAQFIAGYLAAADQLGLEYTPIVDGIPSLFQGGAGFPGNDWTSSTRGQEYLSRIPAQSHRGLARLRAFHLKATQDVLRRLEHPGKGSDNDAFGWVCSQDRD*
Ga0137366_108106231	3300012354	Vadose Zone Soil	QTDTSGYTQYGRAYLSLESAVPDAQFIAGYVRAALEFGVEYTPVVNGQPSLFQGGAAFPGNDWTVSTNGEDYLSRIPPQSHRALGRIRALHLRVTEDVLRKLEHGGHEHRPIEHVVSFDCR*
Ga0137385_116566781	3300012359	Vadose Zone Soil	VLNFPAPPPLEQSAALFEAVGRIDPNLFSTDTSGYTQYGRAYLSLESAVPDAEFIAGYVQAAHESGVGYTPIINGQPSLFQGGAAFPGNNWRQSPGGEEYLSRIPAQSHPSLAQIRAFHLRVTSEVLKKLGHGNPHAESEVTQFKCR*
Ga0157292_101771681	3300012900	Soil	RTVGRIDPDLFSTDTSGYTQFGRAYLSLQSAVSDEKFIAGYFQAALEFNVEYTPVVGGVPSLFLGGAAFPGNDWTVDTRGEDYLSRIPSQSHPALGKIRAFHLRATREVLRRLDHHDNRWHGDVVSFSCDNSQRT*
Ga0157291_103971461	3300012902	Soil	FPANYVVLNFATPPPLAASAALFETVGRIDPELFETDTSGYTQYGRAYLSLQSAVSDDRFISGYVRAAAAFGVEYTPVINGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHHALARIRAFHLRVTSDVLRRLEHDRRSFADVASFDCH*
Ga0126375_104335991	3300012948	Tropical Forest Soil	TFYSDKAGIFRVNAKDSAEGRGYTQFGRAYLSLQSDVPNQEFIDGYVKAAKQFGVEYTPIVNGEPSLFLGGAAFPGNDWTVSPNGEEYLARIPAQSHRALARIRAFHLRVTRDVLRRLDRRDNKHDADEAVSFECR*
Ga0164303_112174491	3300012957	Soil	SAPPPLAQSAALFETVGRIDPELFETDPSGYTQYGRAYLSLESFVPDQEFIDAYVQAAQQTGVEYTPVVNGTPSLFQGGAAFPGNDWEASPAGQEYLARIPSQSQPALKPIRAYVLRVTKEVLRNLGHGKADLRDVNRFACQ*
Ga0163163_100913994	3300014325	Switchgrass Rhizosphere	QYGRAYLSLRSAVSDEQFIAGYVEAARRFGVEYTPIVNGQPSLFQGGAAFPGNDWIQNPGGQEYLSRIPAPSHRALRRIRALHLQITKDVLRTLEPGAHHGDGVRINCQ*
Ga0157380_111643081	3300014326	Switchgrass Rhizosphere	LFETVGKIDPELFSTDTSGYTQYGRAYLSLQSDVSNDRFIAGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR*
Ga0157376_122615971	3300014969	Miscanthus Rhizosphere	TVGRIDTELFSTDTSGYTQYGRAYLSLRSAVSDEQFIAGYVEAARRFGVEYTPLVNGQPSLFQGGAAFPGNDWTASPGGQEYLSRIPAQSHRALRRIRASNLQITRDVLRALGPGGHHDGHGDGVKIDCR*
Ga0173480_103104972	3300015200	Soil	PTIARSAALFETVGRIDPELFETDTSGYTQFGRAYLSLQSAVSDAQFIAGYVEAARVAGVEYTPVVNGQPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR*
Ga0180067_11146841	3300015257	Soil	PELFETDTSGYTQYGRAYLSLQSDVPDEQFIEGYRRAAAEAGVEYTPIVNGTHSLFQGGAAFPGNDWTVSTQGEEYLSRIPPQSHRALRRIRAFHLRVTQDVLRKLEHRGNRSHDDVVSFECQ*
Ga0180093_10699481	3300015258	Soil	NYVVVNFPAPPPIATSAAFFRAVGRIDRELFDTDTSGYTQYGRAYLSLQSNVSKRRFIKGYSEAANIFGLEYTPMVNGVPSLFRGGAAFPENDWTVSTGGEDYLSRIPAQSHRGLGRVRAFHLRVTGEVIRKLERHDKRSHDDVVSFECR*
Ga0132258_100822141	3300015371	Arabidopsis Rhizosphere	PANYVVLNFATPPPLDASAALFETVGRIDPELFATDTSGYTQYGRAYLSLQSAVPDQQFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTVSPRGEEYLIRIPARSHPALARIRAFHLRVTRDVLRRLEHDRRSFADVASFECN*
Ga0132258_103222845	3300015371	Arabidopsis Rhizosphere	YTQFGRAYLSLQSDVPDAEFIAGYVAAANQLGLQYTPVVNGVPSLFQGGAAFPGNDWTSSTTGQEYLSRIPAQSHRALARLRAFHLKATRDALRELEHPGKGSDDDAIGSVCSQGRD*
Ga0132256_1003139203	3300015372	Arabidopsis Rhizosphere	PLAVSAALFKAVGQIDPELFGTDTSGYTQYGRAYLSLQSDVPDARFIAGYVAAANLFRVEYTPIVSGQPSLFRGGAAFPGNDWTVNVRGEEYLSRIPAQSHRALSRIRLFVLGATEEVVRKLEQGHKRPSETVASFDCRSKERES*
Ga0132257_1041922641	3300015373	Arabidopsis Rhizosphere	TVGRIDRELFATDTSGYTQYGRAYLSLQSAVSDERFIAGYVRAAAAFGVEYTPVSNGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPAGSHRALARIRAFHLRVTREVLRRLEHDRRPFAAVASFDCSAS*
Ga0132257_1044503061	3300015373	Arabidopsis Rhizosphere	VVLNFQTPPPIAVSARLFRAVGRIDPELFETDTSGYTQFGRAYLSLQSDVPDAQFIAGYVRAAAEFGVEYTPIVNGVPGLFKGGAAFPGNDWTVSTRGEEYLSRIPSQSHRALGGIRAFHLRVTREVLRGLEHHDNRSHDDVVSFDCQ*
Ga0132255_1012749611	3300015374	Arabidopsis Rhizosphere	YVVLNFDKPPSLATSAALFETVGRIDPELFETDTSGYTQYGRAYLSLQSAVPDAQFIAGYVEAASRFGVEYTPIVAGVPSLFQGGAAFPGNDWTASPHGEEYLARIPAAAHRALGKLRAFSLRVTSQVVRRIEQGRHDVVEFSCH*
Ga0132255_1043117012	3300015374	Arabidopsis Rhizosphere	AALFKLVGRIDPKLFETDTSGYTQYGRAYLSLQSDVPDAEFIAGYARAAAIAGVEYTPIAGGAPSLFQGGAAFPGNDWTVNTHGEDYLSRIPARSHLALTRIRAFHLKVTREVLRRLQHPNKRGDDDAISFECR*
Ga0190266_111596141	3300017965	Soil	DPDLFSTDTSGYTQFGRAYLSLQSDVSDEKFIAGYVQAALEFNVEYTPVVGGVPSLFLGGAAFPGNDWTVDTRGEDYLSRIPRRSHPALGKIRAFHLRATREVLRRLDHHGNRWHADVVSFSCDNSQRT
Ga0184611_10147374	3300018067	Groundwater Sediment	VGRIDKELFETDTSGYTQYGRAYLSLQSAVPDEQFIAGYVKAAGIAGVEYTPIVMGTPALFQGGAAFPGNDWTANPGGEEYLERIPVRSHRALARIRAFHLQITREVLRRLEHGNDKRALEEATSFACR
Ga0184611_13462941	3300018067	Groundwater Sediment	SAGFFRLVGRIDNELFATDTSGYTQFGRAYLALQSDVPDAQFIAGYVRATSIAGLEYTPLINGEPALFQGGAAFPGNDWTSNPNGEEYLSRIPADSHRALARIRAFHLRVTREVLRKLDRRGDRSTERWHDGDAVAFDCR
Ga0190265_130814311	3300018422	Soil	VLNFKTAPPIAASAALFKTVGRIDPELFETDTSGYTQFGRAYLSLQSDVPDAQFIAGYFRAAKEFGVAYTPIVNGMPSLFQGGAAFPGNDWTVNTRGEEYLSRIPAQSHRALGRIRAFHLRVTQEVLRKLRHQNKRSHEDVVSFACR
Ga0190272_110077422	3300018429	Soil	VLNFDTPPPLARSAALFKTVGRIDPDLFRTETSGYTQYGRAYLSLQSDVEDAQFIHGYVRAAAEFGVEYTPVVNGAPSLFQGGAAFPGNNWLVNTRGEEYLSRIPRQSHRELGRIRAFHLRATQDVLRKLERRNHRSNDDVVSFECR
Ga0190270_112747502	3300018469	Soil	VNFRTPPPISVSAGFFRLVGRIDNELFATDTSGYTPYGRSYPGLQSDAPAAQFTAGYTRAASIAGLEYTPLINGEPTLFQGGAAFPGNDWTSNPNGEEYLSRIPADSHRALARIRAFHLRVTQEVLRKLDRRDDRSAQRWHGDDALTFDCR
Ga0190274_100539031	3300018476	Soil	DAPPPLARSAALFRTVGRIDPELFETDTSGYTQYGRAYLSLQSDVPDKQFIDGYVRAAAEAGVEYTPIVNGKPSLFQGGAAFPGNDWTLSTQGEEYLSRIPPQSHRALRRIRAFHLRATQEVLRKLEHRGNRSHDDVVSFECQ
Ga0190274_110477572	3300018476	Soil	VVNFRTPPPISVSAGFFRIVGRIDNELFATDTSGYTQYGRAYLALQSDVPDAQFIDGYVQATSIARLEYTPLINGKPALFQGGAAFPSNDWTANPGGEEYLSRIPADSHRALARIRAFHLRVTREVLRKLDRRGDRSTERWHDGDAVAFDCR
Ga0190274_114590091	3300018476	Soil	DTSGYTQYGRAYLSLQSAVPDDQFIAGYVKAARLTGLEYTPIVMGQPSLFQGGAAFPGNDWTVSPRGEDYLERIPVQSHRALGKIRAFHLQITREVLRRLEHGNDKRALEEATSFTCR
Ga0190271_122747541	3300018481	Soil	NFPTPPPIAKSAAFFRAVGRIDSELFATDSSGYTQFGRAYLSLQSFVSDEQFIAGYTEAARLFRLEYTPIVNGIPSLFQGGAAFPGNDWTLNTRGEEYLSRIPQQSHRALGRVRAFHLRATGEVIRKLERHDKRSHDDAVSFECR
Ga0066669_104235791	3300018482	Grasslands Soil	YVVLNFAAPPSIADSAALFETVGRIDPQIFSTDTSGYTQYGRAYLSLQSDVPDAEFIAGYVQAADEFGVEYTPIVNGQPSLFQGGAAFPGNNWRTKPNGEGYLARIPAQTHAALGQIRDFHLRVTREVLKKLKEGDDHHDGDKAVREVTQFKCR
Ga0190273_118483692	3300018920	Soil	VGRIDPDLFATDTSGYTQYGRAYLSLQSDVPDAQFIAGYTRAAAEAGVEYTPIVEGKPSLFQGGAAFPGNDWTSNTRGEDYLSRIPPQSHRALARIRAFHLRVTQEVLRRLAHHDKRAAHDDVVSFECR
Ga0173481_104219621	3300019356	Soil	PELFETDTSGYTQFGRAYLSLQSAVSDAQFIAGYAQAAMEFGVEYTPIVNGKPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR
Ga0173479_100625161	3300019362	Soil	ASAALFETVGRIDRELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPHGEDYLSRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR
Ga0190264_106561351	3300019377	Soil	LFDTDTSGYTQYGRAYLSLQSAVRDERFIAGYVKAARITGLEYTPIVMGQPSLFQGGAAFPGNDWTVSPRGEEYLERIPVQSQRALARIRAFHLQITREVLRRLEHGNDKRALEEATSFGCR
Ga0190264_113596411	3300019377	Soil	PPLAASAALFETVGGIDRELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAVFGVEYTPLINGTPALFQGGAAFPGNDWTVSTRGEEYLSRIPARSHRALARIRAFHLRVTREVLRRLEHDRRSFADVASFDCH
Ga0187892_104893611	3300019458	Bio-Ooze	LFETDTSGYTQFGRAYLSLQSAVPDQQFIDGYVKAARIVGVEYTPIVNGMASLFQGGAAFPGNDWEVFTRGEDYLSRIPAQSHRALGRIRAFVLRVTREVLRRLEEHDRRSSHDVVSFDC
Ga0210382_105416331	3300021080	Groundwater Sediment	GRIDPELFETDTSGYTQYGRAYLSLQSAVPDAQFIAGYVRAAAEFGVEYTPIVNGKPSLFRGGAAFPGNDWTLNTRGEEYLSRIPPQSHRALGRIRAFHLRATQEVLRRLEHHDKRSQDDVVSFECR
Ga0210380_104298431	3300021082	Groundwater Sediment	TVGRIDPELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLLRIPARSHHALARIRAFHLRVTREVLRRIEHDRRSFADVASFDCH
Ga0247787_10810131	3300022893	Soil	AAFFAAVGAIDPQLFETDTSGYTQYGRAYLSLQSDVPDSQFIAGYSQAAAQAGLEYTPIVSGQPALFQGGAAFPGNDWSVNKQGEDYLARIPEASHTALARIRAFHLRFTRAVLARLAQGNTSPRVMRVFLSRLECN
Ga0247790_102013681	3300022915	Soil	PLAASAALFETVGRIDPELFETDTSGYTQYGRAYLSLQSAVSDDRFISGYVRAAAAFGVEYTPVINGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHHALARIRAFHLRVTSDVLRRLEHDRRSFADVASFDCH
Ga0247790_102161811	3300022915	Soil	VVLNFATPPPLAASAALFETVGRIDRELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEDYLLRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR
Ga0247754_11009911	3300023102	Soil	ELFSTDTSGYTQYGRAYLSLQSDVSNDRFIAGYVRAAAAFGVEYTPVINGTPSLFTGGAAFPGNDWTASPRGEEYLTRIPARSHRALAHIRAFHLRVTRDVLRRLEHDRRAFPDVASFDC
Ga0247798_10309051	3300023260	Soil	SAALFETVGRIDPELFATDTSGYTQYGRAYLSLQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0207657_113855101	3300025919	Corn Rhizosphere	PLSNLQDDHDDAGGRIFATPPPLAASAALFETVGTIDRELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Ga0207650_106482411	3300025925	Switchgrass Rhizosphere	LFETDTSGYTQYGRAYLSLQSNVSDARFIAGYVEAARVAGVEYTPVVNGQPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR
Ga0207701_101355571	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	YTQYGRAYLSLQTAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPARSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Ga0207701_108707122	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TPPPLAASAALFETVGRIDPELFATDTSGYTQYGRAYLSLQSDVPNQRFIDGYVRVAAAFGVEYTPLINGTPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALANIRAFHLRVTRDVLRRLEHDRRSFADVASFDCH
Ga0207706_110893602	3300025933	Corn Rhizosphere	SAALFETVGRIDRELFATDTSGYTQYGRAYLSLQSAVSDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEDYLLRIPARSHRALARIRAFHLRVTREVLSRLDHDRRSFADVASFDCR
Ga0207711_107257952	3300025941	Switchgrass Rhizosphere	KTPPPIAVSAKLFKAVGRIDPELFETDTSGYTQFGRAYLSLQSDVPDAQFIAGYVRAAAEFGVEYTPIVNGVPSLFQGGAAFPGNDWTVSTRGEEYLSRIPPQSHRALGRIRAFHLRVTREVLRSLERHDNRSHDDVVSFECQ
Ga0207712_114932391	3300025961	Switchgrass Rhizosphere	ELFATDTSGSTQYGRAYLSLQSAVPDPQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0207708_118063901	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	FPRLPPLQASAALFRTVGEIDPLLFATDTSGYTQFGRAYLSLQSDVPDAQFIAGYVAAAGQLGLQYTPVVNGLPSLFQGGAAFPGNDWTSSTGGQEYLSRIPAQSHRGLARLRAFHLKATQDVLRRLKHPGRGSDNDPIGWVCGQDHD
Ga0207675_1000961617	3300026118	Switchgrass Rhizosphere	TSGYTQYGRAYLSLQSDVSNDRFIAGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPERSHRALARIRAFHLRVTREVLGRLEHDRRSFADVASFDCR
Ga0209077_11317872	3300027675	Freshwater Sediment	IARSARLFETVGEIDPELFETDTSGYTQYGRAYLSLQSAVPDAQFIAGYVEAAARFGVEYTPIVGGVPSLFQGGAAFPGNDWTASPGGEEYLARIPAAAHQALGRIRAFHLRLTRKVLRRIEQGHHDVVEFSCH
Ga0268265_120340631	3300028380	Switchgrass Rhizosphere	LNFDTPPPIAKSAALFKLVGRIDPELFETDTSGYTQYGRAYLSLQSDVPDAQFISGYVRAASEFGVEYTPVVNGVPSLFKGGAAFPGNDWIASPRGEDYLARIPEQSHRALARIRAFVLRVTREVEHKLERRDDRHDNPISFDCK
Ga0247819_109111961	3300028608	Soil	FSTDTSGYTQYGRAYLSLQSDVSNDRFIAGYVRAAAAFGVEYTPVINGTPSLFTGGAAFPGNDWTASPRGEEYLTRIPARSHRALAHIRAFHLRVTRDVLRRLEHDRRAFPDVASFDCH
Ga0307284_102920711	3300028799	Soil	AAPPSIAKSAALFEAVGRIDPELFSTDTSGYTQYGRAYLSLQSDVPDAQFIAGYVQAAEESSVEYTPIINGQPSLFTGGAGFPGNNWNTKPHGEGYLARIPTQSHSALGQIRDFHLRVTREVLKKLKNGNGHHDGDQGASEVTQFKCR
Ga0247825_110514122	3300028812	Soil	DRELFATDTSGYTQYGRAYLSLQSDVSDEQFIAGYARAARQFGVEYTPVVNGAPSLFVGGAAFPGNDWTSSPRGEEYLSRIPRESHRALSRLRAFHLQVTKAVLDSLGRGDARSLDDVLAFDCRTDSGS
Ga0307497_107231591	3300031226	Soil	SAALFETVGRIDRELFATDTSGYTQYGRAYLSLQSAVPDERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALANIRAFHLRVTRDVLRRLEHDRRSFADVASFDCH
Ga0307497_107811421	3300031226	Soil	PSIRRSAALFETVGRIDPELFETDTSGYTQYGRAYLSLQSAVPDQQFIDGYVAAAAAFGVEYTPIVGGSPSLFAGGAAFPGNDWTQSPRGEEYLSRIPSQAHSGLARIRAFHLSVTRKVLRRIEQGRHDVVEFSCH
Ga0310886_110171561	3300031562	Soil	ASAALFETVGRIDPELFATDTSGYTQYGRAYLSLQSAVSDDRFISGYVRAAAAFGVEYTPVINGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALAHIRAFHLRVTSEVLRRLEHDRRPFADVASFDCH
Ga0310813_110673701	3300031716	Soil	YVVLNFPSTPTIARSAALFETVGRIDPELFETDTSGYTQFGRAYLSLQSAVSDAQFIAGYAQAAMEFGVEYTPIVNGKPSLFQGGAAFPGNDWTVSREGEDYLSRIPAQSHRALARIRAFHLQVTQEVLRKLAHGNDKHAIDEVSSFQCR
Ga0310907_107513432	3300031847	Soil	QFGRAYLSLQSAVSDEKFIAGYVKAALEFNVEYTPVVGGVPSLFLGGAAFPGNDWTVDTRGEDYLSRIPPQSHPALGKIRAFHLRATREVLRRLGDHGNRWHGDVVSFSCDNSQRT
Ga0310900_103879471	3300031908	Soil	AALFETVGRIDPELFATDTSGYTQYGRAYLSLQSAVSNERFIDGYVRAAAAFGVEYTPVINGTPSLFQGGAAFPGNDWTASPRGEEYLSRIPAHSHHALARIRAFHLRVTREVLRRLEHDRRSFADVASFDCH
Ga0310900_104393131	3300031908	Soil	TPPPLAASAALFETVGRIDPELFATDTSGYTQYGRAYLSLQSAVPDQQFIDGYVRAAAAFHVEYTPVINGTPSLFQGGAAFPGNDWTVSTRGEEYLSRIPVRSHGALARIRAFHLRVTRDVLRRLEHDRRGSAAVVSFDCAN
Ga0310900_119528781	3300031908	Soil	RIDPDLFETDTSGYTQYGRAYLSLQSAVPDQQFIDGYVAAAAAFGVEYTPIVGGSPSLFAGGAAFPGNDWIQSPRGEEYLARIPSQAHFELGRIRAFHLSVTRKVLRRIEQKRHDVVEFSCH
Ga0310902_100520831	3300032012	Soil	IAASAALFRIVGGIDKDLFETDTSGYTQYGRAYLSLQSAVPDAQFIAGYVEAASRFGVEYTPIVGGVPSLFQGGAAFPGNDWTASPRGEEYLTRIPAAAHRALGKLRDFALRVTKQVVRRIEQGRHDVVEFSCH
Ga0310902_101598451	3300032012	Soil	NYVVLNFATPPPLAASAALFETVGRIDPELFETDTSGYTQYGRAYLSLQSAVSDDRFISGYVRAAAVFGVEYTPVINGMPSLFQGGAAFPGNDWTVSPRGEEYLSRIPARSHRALAHIRAFHLRVTSEVLRRLEHDRRPFADVASFDCH
Ga0310902_104113222	3300032012	Soil	TDTSGYTQYGRAYLSLQSAVPDEQFIAGYLRAAAEAGVEYTPIINGAPSLFQGGAAFPGNDWTLSTQGEEYLSRIPPQSHRALGRIRAFHLRATQDVLRNLEHHGHRSPDDVVSFECR
Ga0310902_105383742	3300032012	Soil	TDTSGYTQYGRAYLSLQSDVPDEQFIKGYVQAAAAFGVEYTPVVNGQPTLFTGGAAFPGNDWTVNTNGEEYLARIPSQSHRALSRIRAFHLRVTREVLRKLDDSDQRRHDGPIAFECR
Ga0315910_110120121	3300032144	Soil	YVVLNFDTPPSIAKSAALFRTVGRIDSELFATDTSGYTQYGRAYLSLQSDVPDAQFIAGYVRAAAEFGVEYTPLINGAPSLFQGGAAFPGNDWILNPHGEEYLARIPAQSHRALARLRAFHLRATEEVLRKLEYHGKRPPYDPVSFDCR
Ga0310889_103702401	3300032179	Soil	ARSAALFRTVGRIDPDLFSTDTSGYTQFGRAYLSLQSAVSDEKFIAGYVQAALEFNVEYTPVVGGLPSLFLGGAAFPGNDWTVDTRGEDYLSRIPPQSHPALGKIRAFHLRATREVLRRLGDHGNRWHGDVVSFSCDNSQRT
Ga0310896_109481721	3300032211	Soil	RIDPKLFETDTSGYTQYGRAYLSLQSDVPDEQFIAGYVRAADEFGVDYTPIVNGTPTLFQGGAAFPGNDWTVNSRGEEYLSRIPQQSHRALSRIRAFHLRVTREVLRKLEFHDKRSHDDAVSFECRGRE
Ga0314866_085771_1_369	3300033807	Peatland	QIDPNLFDTDSSGYTQYGRAYLSLESFVPDQEFIDGYVQAAAVYGLEYTPIVGGVPSLFQGGAAFPGNDWTVSRKGEDYLSRIPAASHAALRKIRQNQLRIVRDVLKGIETGRRDPIQFSCH
Ga0364925_0171728_3_413	3300034147	Sediment	RSAALFRTVGRIDPELFETDTSGYTQYGRAYLSLQSDVPDEQFIEGYRRAAAEAGVEYTPIVNGTHSLFQGGAAFPGNDWTVSTQGEEYLSRIPPQSHRALRRIRAFHLRVTQDVLRKLEHRGNRSHDDVVSFECQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084438

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences