Metagenome / Metatranscriptome Family F084437

Basic Information
Family ID	F084437
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	76 residues
Representative Sequence	DIILSIEKNGTEIGTITFDAGGDIDSDGGQVGAFNIPAATDFAEGDRYALRVTQSDNAAPAGLSVTLPFLRTDI
Number of Associated Samples	80
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	92.86 %
% of genes from short scaffolds (< 2000 bps)	82.14 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Most Common Taxonomy
Group	Unclassified (89.286 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere (8.929 % of family members)
Environment Ontology (ENVO)	Unclassified (52.679 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.500 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 28.43% Coil/Unstructured: 71.57%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01471	PG_binding_1	2.68
PF00622	SPRY	1.79
PF01979	Amidohydro_1	0.89
PF01717	Meth_synt_2	0.89
PF02653	BPD_transp_2	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
All Organisms	root	All Organisms	10.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
cellular organisms	root	All Organisms → cellular organisms	8.04 %
Viruses	superkingdom	All Organisms → Viruses	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.04 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.68 %
Holosporales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	2.68 %
Candidatus Paracaedibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %
Candidatus Odyssella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %
unclassified Candidatus Odyssella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.29 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %
Candidatus Odyssella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02H4TAI	Not Available	512	Open in IMG/M
3300000559\|F14TC_105778265	Not Available	629	Open in IMG/M
3300000858\|JGI10213J12805_10135434	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3172	Open in IMG/M
3300000858\|JGI10213J12805_10164710	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3075	Open in IMG/M
3300001431\|F14TB_108963709	Not Available	562	Open in IMG/M
3300002077\|JGI24744J21845_10098371	Not Available	539	Open in IMG/M
3300002244\|JGI24742J22300_10019930	Not Available	1141	Open in IMG/M
3300002244\|JGI24742J22300_10126919	Not Available	506	Open in IMG/M
3300005093\|Ga0062594_101725603	Not Available	655	Open in IMG/M
3300005328\|Ga0070676_10367869	Not Available	992	Open in IMG/M
3300005341\|Ga0070691_10394399	Not Available	778	Open in IMG/M
3300005354\|Ga0070675_101109807	Not Available	727	Open in IMG/M
3300005355\|Ga0070671_101258472	Not Available	652	Open in IMG/M
3300005356\|Ga0070674_100021488	All Organisms → cellular organisms → Bacteria → Proteobacteria	4145	Open in IMG/M
3300005356\|Ga0070674_100156466	Not Available	1725	Open in IMG/M
3300005356\|Ga0070674_100817171	Not Available	806	Open in IMG/M
3300005356\|Ga0070674_101078647	Not Available	708	Open in IMG/M
3300005356\|Ga0070674_101394982	Not Available	627	Open in IMG/M
3300005356\|Ga0070674_101534512	Not Available	599	Open in IMG/M
3300005364\|Ga0070673_100533265	Not Available	1065	Open in IMG/M
3300005456\|Ga0070678_101317772	Not Available	672	Open in IMG/M
3300005459\|Ga0068867_100536240	Not Available	1011	Open in IMG/M
3300005526\|Ga0073909_10022482	Not Available	2073	Open in IMG/M
3300005526\|Ga0073909_10212925	Not Available	841	Open in IMG/M
3300005713\|Ga0066905_102316747	Not Available	502	Open in IMG/M
3300005718\|Ga0068866_10020644	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3021	Open in IMG/M
3300005764\|Ga0066903_100607888	Not Available	1897	Open in IMG/M
3300005842\|Ga0068858_101874437	Not Available	592	Open in IMG/M
3300005843\|Ga0068860_101820026	Not Available	631	Open in IMG/M
3300005937\|Ga0081455_10424776	Not Available	915	Open in IMG/M
3300005937\|Ga0081455_10589626	Not Available	727	Open in IMG/M
3300005937\|Ga0081455_10659723	Not Available	672	Open in IMG/M
3300006195\|Ga0075366_10655633	Not Available	651	Open in IMG/M
3300006195\|Ga0075366_11043828	Not Available	510	Open in IMG/M
3300006237\|Ga0097621_101266330	Not Available	696	Open in IMG/M
3300006237\|Ga0097621_101388314	Not Available	665	Open in IMG/M
3300006358\|Ga0068871_101986805	Not Available	553	Open in IMG/M
3300006854\|Ga0075425_102465164	Not Available	576	Open in IMG/M
3300009081\|Ga0105098_10817833	Not Available	504	Open in IMG/M
3300009098\|Ga0105245_10021172	All Organisms → cellular organisms → Bacteria	5702	Open in IMG/M
3300009098\|Ga0105245_11324128	Not Available	769	Open in IMG/M
3300009148\|Ga0105243_10686983	Not Available	996	Open in IMG/M
3300009148\|Ga0105243_12763035	Not Available	531	Open in IMG/M
3300009156\|Ga0111538_11104171	Not Available	1003	Open in IMG/M
3300009176\|Ga0105242_10344407	Not Available	1374	Open in IMG/M
3300009551\|Ga0105238_11891217	Not Available	630	Open in IMG/M
3300009553\|Ga0105249_10575187	Not Available	1179	Open in IMG/M
3300009553\|Ga0105249_10685506	Not Available	1084	Open in IMG/M
3300009553\|Ga0105249_10707301	Not Available	1068	Open in IMG/M
3300010047\|Ga0126382_11980976	Not Available	554	Open in IMG/M
3300010362\|Ga0126377_12954441	Not Available	548	Open in IMG/M
3300010366\|Ga0126379_10292662	Not Available	1629	Open in IMG/M
3300010376\|Ga0126381_102947812	Not Available	677	Open in IMG/M
3300010397\|Ga0134124_12894243	Not Available	524	Open in IMG/M
3300010398\|Ga0126383_10953563	Not Available	945	Open in IMG/M
3300010398\|Ga0126383_13501881	Not Available	513	Open in IMG/M
3300010399\|Ga0134127_11138006	Not Available	845	Open in IMG/M
3300010400\|Ga0134122_10137606	Not Available	1973	Open in IMG/M
3300010403\|Ga0134123_10673230	Not Available	1007	Open in IMG/M
3300010403\|Ga0134123_10893921	Not Available	893	Open in IMG/M
3300011106\|Ga0151489_1324098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	520	Open in IMG/M
3300012232\|Ga0137435_1147895	Not Available	717	Open in IMG/M
3300012948\|Ga0126375_10310830	Not Available	1099	Open in IMG/M
3300012948\|Ga0126375_10645884	Not Available	815	Open in IMG/M
3300013296\|Ga0157374_12115257	Not Available	590	Open in IMG/M
3300013308\|Ga0157375_10087964	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3160	Open in IMG/M
3300013308\|Ga0157375_12407567	Not Available	628	Open in IMG/M
3300014326\|Ga0157380_11676096	Not Available	693	Open in IMG/M
3300014968\|Ga0157379_10706407	Not Available	947	Open in IMG/M
3300014969\|Ga0157376_12161204	Not Available	595	Open in IMG/M
3300015371\|Ga0132258_10951593	Not Available	2169	Open in IMG/M
3300015372\|Ga0132256_103495552	Not Available	528	Open in IMG/M
3300015374\|Ga0132255_103261392	Not Available	692	Open in IMG/M
3300017792\|Ga0163161_10552718	Not Available	944	Open in IMG/M
3300017792\|Ga0163161_10614987	Not Available	897	Open in IMG/M
3300017792\|Ga0163161_10665069	Not Available	864	Open in IMG/M
3300018073\|Ga0184624_10534031	Not Available	507	Open in IMG/M
3300018481\|Ga0190271_10094704	Not Available	2728	Open in IMG/M
3300021560\|Ga0126371_11952260	Not Available	705	Open in IMG/M
3300024177\|Ga0247686_1054065	Not Available	502	Open in IMG/M
3300024232\|Ga0247664_1010995	All Organisms → cellular organisms → Bacteria	2087	Open in IMG/M
3300024249\|Ga0247676_1049126	Not Available	687	Open in IMG/M
3300025315\|Ga0207697_10111539	Not Available	1171	Open in IMG/M
3300025315\|Ga0207697_10114428	Not Available	1157	Open in IMG/M
3300025927\|Ga0207687_10010310	All Organisms → cellular organisms → Bacteria	6106	Open in IMG/M
3300025927\|Ga0207687_10194676	Not Available	1580	Open in IMG/M
3300025930\|Ga0207701_10246822	Not Available	1559	Open in IMG/M
3300025933\|Ga0207706_10297791	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300025933\|Ga0207706_10467626	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300025934\|Ga0207686_10380866	Not Available	1070	Open in IMG/M
3300025937\|Ga0207669_10007221	All Organisms → cellular organisms → Bacteria → Proteobacteria	5120	Open in IMG/M
3300025937\|Ga0207669_11326840	Not Available	611	Open in IMG/M
3300025941\|Ga0207711_11442824	Not Available	631	Open in IMG/M
3300025942\|Ga0207689_11229053	Not Available	630	Open in IMG/M
3300025961\|Ga0207712_10493564	Not Available	1045	Open in IMG/M
3300025961\|Ga0207712_12032652	Not Available	514	Open in IMG/M
3300026035\|Ga0207703_11831825	Not Available	583	Open in IMG/M
3300026089\|Ga0207648_10687318	Not Available	948	Open in IMG/M
3300026121\|Ga0207683_11229238	Not Available	694	Open in IMG/M
3300027310\|Ga0207983_1038196	Not Available	614	Open in IMG/M
3300027821\|Ga0209811_10015709	Not Available	2447	Open in IMG/M
3300027821\|Ga0209811_10031795	Not Available	1759	Open in IMG/M
3300028072\|Ga0247675_1044864	Not Available	653	Open in IMG/M
3300028281\|Ga0247689_1052917	Not Available	572	Open in IMG/M
3300028720\|Ga0307317_10257578	Not Available	589	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	59.82%
Environmental	Environmental	40.18%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	59.82%
Terrestrial	Environmental → Terrestrial	34.82%
Aquatic	Environmental → Aquatic	5.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	34.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.54%
Roots	Host-Associated → Plants → Roots	4.46%
Freshwater	Environmental → Aquatic → Freshwater	2.68%
Sediment	Environmental → Aquatic → Sediment	2.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.39%
Loam	Environmental → Terrestrial → Soil → Loam	4.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.79%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	8.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.04%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	8.04%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.57%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.79%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024177	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024249	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028072	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16	Environmental	Open in IMG/M
3300028281	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK30	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_06409380	2170459003	Grass Soil	KNRVEIGTITFAAGGTLDAAGGQLGAFNVPAQTNFAAGDLYALRVTQSDNADPAGLSVTLPFVRTDI
F14TC_1057782651	3300000559	Soil	EIGTIIFAANGDIDTAGGQVGDFNIPAATAFAEGDTYALRVTQSDNAEPSGLSVTLPFVRTDI*
JGI10213J12805_101354345	3300000858	Soil	TEIGTITFEAAGDIDTAGGQEGAFSILAAVAFAEGDRYALRATQSDNVEPTGLSVTLPFVRTDV*
JGI10213J12805_101647105	3300000858	Soil	EAAGDIDTAGGQEGAFSILAAVEFAEGDRYALRVTQSDNVEPTGLSVTLPFVRTDL*
F14TB_1089637091	3300001431	Soil	DVGNDSTGATDIVLSIEKNRAEIGTITFNANGEIDTAGGQVGAFNIPAATDFAQGDTYALRATQSDNVEPSGLSVTLPFVRTDI*
JGI24744J21845_100983711	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	GDIDTSGGQAGTFNLPTDTDFAEGDHYTLRVTQSDNAEPAGLSVTLPFIRTDI*
JGI24742J22300_100199303	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	DTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI*
JGI24742J22300_101269191	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	DHAYAYLDVGIGTGTNIVIAIEKNRVQVGTVTFTAGATLDAGGGQSGSISVPVATEFAQGDRYALRVTASSNAVPAGMSVTLPFVRTDI*
Ga0062594_1017256031	3300005093	Soil	VEIGTVTFEAAGDLDTGGGQVGTFSIPADTDFAEGDIYGLRVTQSDNAEPSGLSVTLPFLRTDI*
Ga0070676_103678692	3300005328	Miscanthus Rhizosphere	IQRDAGELVVQFIANRSMQLPAGNAGAYAYLEVGDDSTGATDIILSIEKNRVEIGTVTFTAGDLDTGGGHEGNIAVPATVDFAAGDRYALRVTQSDNAGASGLSVTLPFLRTDI*
Ga0070691_103943991	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYGEGDRYALRVTQSDNAEPAGLSVTLPFVRTDI*
Ga0070675_1011098072	3300005354	Miscanthus Rhizosphere	GAGIGTITFEAGGDIDSDGGQAGDFIIMVATDFAVGDRYGLRVTQSDNAAPSDLSVTLPFVRTDI*
Ga0070671_1012584721	3300005355	Switchgrass Rhizosphere	ATSIILSIQKNATEIGTITIAANAQDGVFNVPVATDFAEGDLYALRVTQSTSAVPAGLSVTLPFIRTDI*
Ga0070674_1000214881	3300005356	Miscanthus Rhizosphere	SGDEGAYAYLDVGNDAPGATDVILSIEWNGTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYAAGSRYALRVTQSDNAEPAGLSVTLPFIRTDI*
Ga0070674_1001564661	3300005356	Miscanthus Rhizosphere	DAVGATDIILAIEKNGTEIGTITFDAGGVIDSDGGQVGTFSIPAAIDFADGDRYALRVTQSDNAEPSGLSVTLPFIRTDI*
Ga0070674_1008171712	3300005356	Miscanthus Rhizosphere	MQLPSGTSGAYAWLDVATDAGGTDIILSIEKNGTEIGTITFDAEEQDGAFSIPATVDFAVGDRYAIRVTQSDNAEPSDLSITLPFLRTDI*
Ga0070674_1010786473	3300005356	Miscanthus Rhizosphere	APGATDVILSIEWNGTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYGEGDRYALRVTQSDNAAPAGLSVTLPFIRTDI*
Ga0070674_1013949823	3300005356	Miscanthus Rhizosphere	IILSIEKNGTEIGTITIAAGEQDGVFNIPAATDFAEGDRYALRVTQSNNDEPSGLSVTLPFIRTDI*
Ga0070674_1015345121	3300005356	Miscanthus Rhizosphere	FDAGGDIDSDGGQVGAFSIPAATDFAEGDRYALRVTQSDNAVPSGLSVTLPFIRTDI*
Ga0070673_1005332652	3300005364	Switchgrass Rhizosphere	GNDAVGATDIVISIEKNGTEIGTITFDAGGVIDGDGGQEGDFVVLAAVDFADGDRYALRVTASDNALPSGLSVTLPFVRTDI*
Ga0070678_1013177721	3300005456	Miscanthus Rhizosphere	IGTITIAANAQDGVFNVPVATDFAEGDLYALRVTQSTSAVPAGLSVTLPFIRTDI*
Ga0068867_1005362401	3300005459	Miscanthus Rhizosphere	GAGDEHAYAYLDVGNDAGGATDIILSIEKNGTEIGTITFDAGGDIDSDGGQVGAFNIPAATDFAEGDRYALRVTQSDNAAPAGLSVTLPFIRTDI*
Ga0073909_100224823	3300005526	Surface Soil	MRIVSGDAHAYAYLDVGIASGTSIILSIQKNRVEIGTVTFTVGGLDAAGGKAGAFNIPATVDFAEGDTYAIRVTQSNNAAPSGLSVTLPFLRTDL*
Ga0073909_102129252	3300005526	Surface Soil	TEIGTITFAAGGTLDANGGQAGVFSIPAQVDFVAGDRYTLRVTQSDNALPSDLSVTLPFERMDI*
Ga0073909_103876511	3300005526	Surface Soil	TDIILSIEKNEVEIGTITFVAGGTVDAAGGQVGVFSIPVDIDFVVGDRYSLRVTQSANGAPSDLSVTLPFVRMDI*
Ga0066905_1023167471	3300005713	Tropical Forest Soil	NGTEIGTITFAAGGGQNGVFSIPTATNFAAGDRYALRVTQSNNVAPADLSVTLPFVRTDI
Ga0068866_100206441	3300005718	Miscanthus Rhizosphere	APGATDVILSIEWNGTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYAAGSRYALRVTQSDNAEPAGLSVTLPFIRTDI*
Ga0066903_1006078881	3300005764	Tropical Forest Soil	DELIFVGIANRNMRLDAGSERAYAYLDVGNDGAGATDIIISIEWNRSEIGTITFVAGGATDTAGGQVGEINVPTAVGFAEGDTYGLRVTQSDNAEPAGLSITLPFIRTDI*
Ga0068858_1018744372	3300005842	Switchgrass Rhizosphere	RSMKIGPGDEGAYAYLDVGNDAPGATDIILSIEWNGTEFGTITFPAGGEIDTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI*
Ga0068860_1018200261	3300005843	Switchgrass Rhizosphere	DVGNDAPGATDIILSIEWNGTEFGTITFPAGGEIDTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI*
Ga0081455_104247763	3300005937	Tabebuia Heterophylla Rhizosphere	YAYLDVGNDSTGATDIVISIEKNRTEIGTITFAAGGDIDTAGGQVGAFTILAATSFAEGDTYGLRITASDNAEPAGLSVTLPFVRTDI*
Ga0081455_105896261	3300005937	Tabebuia Heterophylla Rhizosphere	LFVGIANRTMRLDGAEGAYAYLDIGNDSTGATDIIISIERNRTEIGTVTFAAGGEIDTAGGQVGEFSIPAAVGFVEGDTYGLRVTQSDNAEPAGLSITLPFIRTDI*
Ga0081455_106597231	3300005937	Tabebuia Heterophylla Rhizosphere	IGTITFEGGGDIDSDGGQVGAFNIPAATDFAEGDHYGLRVTQSDNAEPSGLSVTLPFIRTDI*
Ga0075366_106556332	3300006195	Populus Endosphere	LGVGNGSPGATDIILSIEKNGTEIGTITFEAAGDIDTAGGQVGDFTINTTIDFAESDRYALRVTQSDSAGPADLSVTLPFIRTDM*
Ga0075366_110438283	3300006195	Populus Endosphere	LEVGNDSTGATDVIISIEKNGTEIGTITFEAAGELDTAGGQQGDFIILEAVAFAEGDRYALRVTQSDNAEPAGLSVTLPFVRTDI*
Ga0097621_1012663302	3300006237	Miscanthus Rhizosphere	GTITIAAGGQTGSFVVPAAVDFADGDRYALRVTASNNAQPSGLSVTLPFVRLDTL*
Ga0097621_1013883142	3300006237	Miscanthus Rhizosphere	ATEIGTITIAANAQDGVFNIPAATAFAEGDRYALRVTQSNSAVPAGLSVTLPFIRTDI*
Ga0068871_1019868051	3300006358	Miscanthus Rhizosphere	GNDSTGATDVILSIEKNGTEIGTITFAAGGDIDSDGGQVGAFDIPATINFAEGDRYALRVTQSDNAEPAGLSVTLPFIRTDI*
Ga0075425_1024651642	3300006854	Populus Rhizosphere	HACAYLGVGNGSPGATDIILSIEKNGTEIGTITFEAAGDIDTAGGQVGDFTINTTIDFAESDRYALRVTQSDSAGPADLSVTLPFIRTDM*
Ga0105098_108178332	3300009081	Freshwater Sediment	VGNAHAYAYLEVGDDSTGATDIILSIEKNRVEIGTVTFTAGDLDTGGGHEGNIAVPATIDFVEGDRYALRVTQSDNAGASGLSVTRPFLRTDI*
Ga0105245_100211721	3300009098	Miscanthus Rhizosphere	EGAYAYLDVGNDAPGATDVILSIEWNGTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYAAGSRYALRVTQSDNAEPAGLSVTLPFIRTDI*
Ga0105245_113241281	3300009098	Miscanthus Rhizosphere	LSIEKNGTEIGTITFSAGGDIDTSGGQAGTFNLPTDTDFAEGDHYTLRVTQSDNAEPAGLSVTLPFIRTDI*
Ga0105243_106869833	3300009148	Miscanthus Rhizosphere	SIEWNGTEFGTITFPAGGEIDTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI*
Ga0105243_127630351	3300009148	Miscanthus Rhizosphere	IILSIEKNGTEIGTITFDAGGVIDSDGGQVGAFSIPAATDFAEGDRYALRVTQSDNAAPSGLSVTLPFIRTDI*
Ga0111538_111041712	3300009156	Populus Rhizosphere	IEKNRVEIGTITFQAAGDLDTDGGQIGTFDIPADTDFAEGDRYALRVTQSDNAEPAGLSVTLPFLRTDI*
Ga0105242_103444071	3300009176	Miscanthus Rhizosphere	GTEIGTITFDAGGVIDSDGGQVGAFSIPAATDFAEGDRYALRVTQSDNAVPSGLSVTLPFIRTDI*
Ga0105238_118912172	3300009551	Corn Rhizosphere	DAGGDIDSDGGQVGAFNIPAATDFAEGDRYALRVTQSDNAAPAGLSVTLPFIRTDI*
Ga0105249_105751871	3300009553	Switchgrass Rhizosphere	TITFSAGGDIDTSGGQAGTFNLPTDTDFAEGDHYTLRVTQSDNAEPAGLSVTLPFIRTDI
Ga0105249_106855062	3300009553	Switchgrass Rhizosphere	INNRAMQLGAGDDHAHAYLDVGNDAVGATDIILAIEKNGTEIGTITFDAGGVIDSDGGQVGTFSIPAAIDFADGDRYALRVTQSDNAEPSGLSVTLPFIRTDI*
Ga0105249_107073011	3300009553	Switchgrass Rhizosphere	WNGTEFGTITFPAGGEIDTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI*
Ga0126382_119809761	3300010047	Tropical Forest Soil	IFLGIANRTMSLAAGDDGAYAYLDVGNNATGATDIILSIQKNRTEIGTITFTAGGTVDTAGGQAGNFNIPALTDFAEGDHYALRITQSNNAQPAGLSVVLPFIRTDI*
Ga0126377_129544411	3300010362	Tropical Forest Soil	TGATDIVLSIEKNGTEIGTITFVANGDIDSDGGQVGSFNIPALIEFAEGDHYALRVTQSDNAEAAGLSVTLPFVRTDI*
Ga0126379_102926621	3300010366	Tropical Forest Soil	ITFAVSSGIDTAGGQEGVFNIPTATDFAAGDHYALRVTQSNNAEPSGLSVTLPFVRTDI*
Ga0126381_1029478121	3300010376	Tropical Forest Soil	FSIEKNGTAIGTITFAVNTDIDTAGGQAGSFNIPAATDFVEGDHYMLRVTQSDNAEPSGLSITLPFIRTDI*
Ga0134124_128942431	3300010397	Terrestrial Soil	TEIGTITFAAGGDIDSDGGQVGAFDIPATINFAEGDRYALRVTQSDNAEPAGLSVTLPFIRTDI*
Ga0126383_109535632	3300010398	Tropical Forest Soil	GATNIILSIQKNRIEIGTITFAAGGPVDAGGGQAGAFNIPAVTNFVEGDTYGLRVTQSNNAAPSGLSVTLPFIRTDI*
Ga0126383_135018811	3300010398	Tropical Forest Soil	NNAVGATNIILSIQKNRTEIGTITFAAGGTIDAGGGQLGTINIPAATAFAAGDRYALRVTQSNNAQPSGLSVTLPFIRTDI*
Ga0134127_111380061	3300010399	Terrestrial Soil	LDVGNDAPGATDIILSIEWNGTEFGTITFPAGGEIDTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI*
Ga0134122_101376061	3300010400	Terrestrial Soil	ITFPAGGDIDTSGGQVGEFNIPLPVGYGEGDRYALRVTQSDNAAPAGLSVTLPFIRTDI*
Ga0134123_106732302	3300010403	Terrestrial Soil	ENAYAYLDIGNDAVGATAIVLSIEKNGTEIGTITIAAGGQTGSFVVPAAVDFADGDRYALRVTASNNAQPSGLSVTLPFVRLDTL*
Ga0134123_108939212	3300010403	Terrestrial Soil	LPAGNAGAYAYLDVGDDSTGATDIILSIEKNRVEIGTVTFTAGDLDTGGGHEGAIAVPVTVDFIAGDRYALRVTQSDNAGASGLSVTLPFLRTDI*
Ga0151489_13240981	3300011106	Soil	ITIGAGEQEGTFDIPAATDFAEGDRYALRVTASANAEPSGLSVTLPFIRTDI*
Ga0137435_11478952	3300012232	Soil	DIILSIEKNGTEIGTITFDAGGDIDSDGGQVGAFNIPAATDFAEGDRYALRVTQSDNAAPAGLSVTLPFLRTDI*
Ga0126375_103108301	3300012948	Tropical Forest Soil	AYAYLDVGANSGTNIILSIEKNRVEIGTITFTVGVNIDTDGGQTAPINIPAATDFAEGDVYALRVTASANAAPSGLSLTLPFLRTDI*
Ga0126375_106458842	3300012948	Tropical Forest Soil	LASGDDRAYAYLDIANNAGGATNIILSIQKNRTEIGTITFTAGGTVDAGGGQLGVFSIPAQTNFVEGDSYGLRVTQSDNAGPSGLSVTLPFIRTDI*
Ga0157374_121152572	3300013296	Miscanthus Rhizosphere	NGTEIGTITFEADGDVNAADGQEGEIDIPAATNFAEGDRYALRVTQSDNVAPSGLSVTLPFVRTDI*
Ga0163162_120308791	3300013306	Switchgrass Rhizosphere	KNSAEVGTITFAAGGNHAGTFSIPARADFVAGDRYALRITQSIDAAPSDLSVTLPFIRMDI*
Ga0157375_100879646	3300013308	Miscanthus Rhizosphere	AYAYPHSGNDALGAPAIVLSIEKNGTEIGTITIAAGGQTGSFVVPAAVDFADGDRYALRVTASNNAQPSGLSVTLPFVRLDTL*
Ga0157375_124075671	3300013308	Miscanthus Rhizosphere	IAAGGQTGSFSVPAATDFAEGDRYALRITSSNNAQPSGLSVTLPFIRTDI*
Ga0157380_116760962	3300014326	Switchgrass Rhizosphere	GNDGAYAWLDVGVATGTDIILSIEKNTTEIGTITFAVGGGQEGDFDIPADADFAEGDRYALRVTQSGNAAPSDLSVTLPFLRTDI*
Ga0157379_107064073	3300014968	Switchgrass Rhizosphere	NGTEIGTITFAAGGDIDSDGGQVGAFDIPATINFAEGDRYALRVTQSDNAEPAGLSVTLPFIRTDI*
Ga0157376_121612042	3300014969	Miscanthus Rhizosphere	FAAAGSVDAGGGQVGTFSIPATVDFAEGDRYALSVTQSNNAAPSGLSVTLPLLRTDI*
Ga0132258_109515934	3300015371	Arabidopsis Rhizosphere	ADRAMRLLSLSSAPYAYLDIGNDAGTTDIIVSIEKNEVEIGTVTFVAGGTVDADGGQLGEFSIPADVDFVASDRYALRVTQSAEAVPSDLSVTLPFERLDV*
Ga0132256_1034955522	3300015372	Arabidopsis Rhizosphere	VMPGGGSNIVISIQKNSTEIGTITFTVAGGHVGTFNIPATTDFAEGDRYGLRVTSSDNAAPADLSITLPFLRTDI*
Ga0132255_1032613922	3300015374	Arabidopsis Rhizosphere	IDTAGGQVGEFAIPAAVDFAEGDTYALRITQSDNALPAGLSVTLPFIRTDI*
Ga0163161_105527182	3300017792	Switchgrass Rhizosphere	ASAYAYLDIGNDAIGGTDIILSIEKNRTEIGTITFEAEGDVDTDGGQVGTFSIPADTAFAEGDLYALRVTQSDNAEPAGLSVTLPFLRTDI
Ga0163161_106149871	3300017792	Switchgrass Rhizosphere	GAYAYLDVGNDSVGATDIILSIERNGTEIGTITFDAGGVIDTDGGQAGEFTINTAVDFAEGDRYALRVTQSDNAEPAGLSVTLPFVRTDI
Ga0163161_106650691	3300017792	Switchgrass Rhizosphere	YLDVGIGTGTNIILSIQKNRTEIGTVTFTAGATLDAGGGQGGTINVPVTTDFAEGDHYALRVTQSNNASPSGLSVTLPFLRTDI
Ga0184624_105340312	3300018073	Groundwater Sediment	YAYLDVGNDSTGATDSILSIEKNGTEIGTITFDAAGDIDTAGGQAGDFNIPAATDFAEGDHYALRVTQSDNAEPSGLSVTLPFVRTDI
Ga0184628_100655203	3300018083	Groundwater Sediment	IGTVTFEAGGTLDAEGGQLGIVIVPANADLVAGDRYALRVTQSDEPVPSDMSVTLPFVRKDI
Ga0190271_100947044	3300018481	Soil	SMRLPAGTEGCFAWLDVGNDGTDVILSIEKNDTEIGTITFASGGDQVGAFVIPADTEFVVGDRYAIRVTQSDNAAPSGLSITLPFLRTDI
Ga0210380_100242751	3300021082	Groundwater Sediment	VLSIEKNSVEIGTITFDAGGTLDADGGQLGVVLVPAQADLVAGDRYALRVTQSNESAPSDMSVTLPFIRTDI
Ga0210380_102757461	3300021082	Groundwater Sediment	VGTITFDAGGTVDADGGQLGAFSIPARADFVAGDRYALRVTQSNDDEPSDLSVTLPFIRMDII
Ga0126371_119522601	3300021560	Tropical Forest Soil	TDIIISIEKNRDEIGTITFAAGSEIDTAGGQAGDFNIPATISFVAGDTYALRVTQSDNAEPSGLSVTLPFIRKNI
Ga0247686_10540652	3300024177	Soil	TFAVGSEIDSDGGQAGAFHVATATDFAEGDIYALRVTASNNAAPSGLSVTLPFLRTDI
Ga0247664_10109951	3300024232	Soil	AYAYLDVGVATGTDIILSIEKNRVEIGTVTFTVGSEIDSDGGQVGAFHVATATDFAEGDIYALRVTASNNAAPSGLSVTLPFLRTDI
Ga0247676_10491262	3300024249	Soil	HAYAYLDVGVATGTDIILSIEKNRVEIGTVTFAVGSEIDSDGGQAGAFHVATATDFAEGDIYALRVTASNNAAPSGLSVTLPFLRTDI
Ga0207697_101115393	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	LDVGNDSTGATDVILSIEKNGTEIGTITFSAGGDIDTSGGQAGTFNLPTDTDFAEGDHYTLRVTQSDNAEPAGLSVTLPFIRTDI
Ga0207697_101144281	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VANRSMKIGPGDEGAYAYLDVGNDAPGATDIILSIEWNGTEFGTITFPAGGEIDTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI
Ga0207687_100103101	3300025927	Miscanthus Rhizosphere	VGNDAPGATDVILSIEWNGTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYAAGSRYALRVTQSDNAEPAGLSVTLPFIRTDI
Ga0207687_101946761	3300025927	Miscanthus Rhizosphere	NDAVGATDVIVSIEKNGTEIGTITFDAGGDIDTAGGQAGDFIINTAVDFAAGDRYALRITQSDNAEPSGLSITLPFVRTDI
Ga0207701_102468223	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	GATAIVLSIEKNGTEIGTITIAAGGQTGSFVVPAAVDFADGDRYALRVTASNNAQPSGLSVTLPFVRLDTL
Ga0207706_102977914	3300025933	Corn Rhizosphere	EGAYAYLDVGNDAPGATDVILSIEWNGTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYGEGDRYALRVTQSDNAAPAGLSVTLPFIRTDI
Ga0207706_104676261	3300025933	Corn Rhizosphere	SIEKNGTEIGTITIAAGGQTGSFVVPAAVDFADGDRYALRVTASNNAQPSGLSVTLPFVRLDNL
Ga0207686_102058011	3300025934	Miscanthus Rhizosphere	GGQAGTFNLPTDTDFAEGDHYTLRVTQSDNAEPAGLSVTLPFIRTDI
Ga0207686_103808661	3300025934	Miscanthus Rhizosphere	IDSDGGQVGAFSIPAATDFAEGDRYALRVTQSDNAVPSGLSVTLPFIRTDI
Ga0207669_100072218	3300025937	Miscanthus Rhizosphere	EGAYAYLDVGNDAPGATDVILSIEWNGTEVGTITFPAGGDIDTSGGQVGEFNIPLPVGYAAGSRYALRVTQSDNAEPAGLSVTLPFIRTDI
Ga0207669_113268401	3300025937	Miscanthus Rhizosphere	DAVGATDIILAIEKNGTEIGTITFDAGGVIDSDGGQVGTFSIPAAIDFADGDRYALRVTQSDNAEPSGLSVTLPFIRTDI
Ga0207711_114428241	3300025941	Switchgrass Rhizosphere	MRLAAGNAHAYAYLDVGNNAPGSTAIILSIEKNRTEIGTITFAAAGTVDAGGGQVGTFSIPATVNFAEGDRYALSVTQSNNAAPSGLSVTLPLLRTDI
Ga0207689_112290531	3300025942	Miscanthus Rhizosphere	IDSDGGQAGDFIIMVATDFAVGDRYGLRVTQSDNAAPSDLSVTLPFVRTDI
Ga0207712_104935642	3300025961	Switchgrass Rhizosphere	INNRAMQLGAGDDHAHAYLDVGNDAVGATDIILAIEKNGTEIGTITFDAGGVIDSDGGQVGTFSIPAAIDFADGDRYALRVTQSDNAEPSGLSVTLPFIRTDI
Ga0207712_120326522	3300025961	Switchgrass Rhizosphere	SEIGTITFEAAGDIDTAGGQEGAFIILAAVDFAEGDHYALRATSSDNAEPAGLSVTLPFVRTDI
Ga0207703_118318252	3300026035	Switchgrass Rhizosphere	RSMKIGPGDEGAYAYLDVGNDAPGATDIILSIEWNGTEFGTITFPAGGEIDTAGGQLGEFDIPLPIGYAAGSRYALRVTQSNNAEPAGLSVTLPFIRTDI
Ga0207648_106873183	3300026089	Miscanthus Rhizosphere	AGIGTITFEAGGDIDSDGGQAGDFIIMVATDFAVGDRYGLRVTQSDNAAPAGLSVTLPFIRTDI
Ga0207683_112292382	3300026121	Miscanthus Rhizosphere	IQKNATEIGTITIAANAQDGVFNIPAATAFAEGDRYALRVTQSNSAVPAGLSVTLPFIRTDI
Ga0207983_10381961	3300027310	Soil	RTMNLPSGNAHAYAYLDVGIASGTSIILSIQKNRVEIGTVTFAVGGLDAAGGKAGAFNIPATVDFAEGDTYAIRVTQSNNATPSGLSVTLPFLRTDI
Ga0209811_100157091	3300027821	Surface Soil	HAYAYLDVGIASGTSIILSIQKNRVEIGTVTFAVGGLDAAGGKAGAFNIPATVDFAEGDTYAIRVTQSNNSTPSGLSVTLPFLRTDI
Ga0209811_100317953	3300027821	Surface Soil	IDIILSIQKNRVEIGTITFVAGSGIDTDGGQPGAFNIPALVDFAEGDTYAIRVTQSNNAAPSGLSVTLPFLRTDI
Ga0209811_101962701	3300027821	Surface Soil	DIILSIEKNEVEIGTITFVAGGTVDAAGGQVGVFSIPVDIDFVVGDRYSLRVTQSANGAPSDLSVTLPFVRMDI
Ga0247675_10448641	3300028072	Soil	TGANIILSIEKNRVEIGTVTFAVGSEIDSDGGQAGAFHVATATDFAEGDIYALRVTASNNAAPSGLSVTLPFLRTDI
Ga0247689_10529171	3300028281	Soil	TVTFTVGSEIDSDGGQAGAFHVATATDFAEGDIYALRVTASNNAAPSGLSVTLPFLRTDI
Ga0307317_102575781	3300028720	Soil	EIGTITIAANAQDGAFSIPAATDFAEGDRYALRVTQSNSAVPSDLSVTLPFIRTDI

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084437

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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