Metagenome Family F084420

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084420
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	90 residues
Representative Sequence	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLRAIRSLSVVGALLLACAAGLVAYEVLRVTLSS
Number of Associated Samples	86
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.26 %
% of genes near scaffold ends (potentially truncated)	27.68 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (17.857 % of family members)
Environment Ontology (ENVO)	Unclassified (30.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.214 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.30% β-sheet: 1.68% Coil/Unstructured: 42.02%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.183.1.0: automated matches	d3nvia_	3nvi	0.68171
a.183.1.1: Nop domain	d2ozbb1	2ozb	0.67857
f.38.1.1: Glycerol-3-phosphate transporter	d1pw4a1	1pw4	0.67818
a.183.1.1: Nop domain	d5ganf2	5gan	0.66415
f.24.1.1: Cytochrome c oxidase subunit I-like	d7coha_	7coh	0.66094

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04191	PEMT	7.14
PF13924	Lipocalin_5	3.57
PF01636	APH	2.68
PF10067	DUF2306	2.68
PF02517	Rce1-like	2.68
PF08974	DUF1877	2.68
PF12867	DinB_2	2.68
PF03473	MOSC	1.79
PF01872	RibD_C	1.79
PF13590	DUF4136	0.89
PF00474	SSF	0.89
PF00884	Sulfatase	0.89
PF08734	GYD	0.89
PF08241	Methyltransf_11	0.89
PF07676	PD40	0.89
PF03243	MerB	0.89
PF13414	TPR_11	0.89
PF13570	PQQ_3	0.89
PF01522	Polysacc_deac_1	0.89
PF13211	DUF4019	0.89
PF13489	Methyltransf_23	0.89
PF00293	NUDIX	0.89
PF13432	TPR_16	0.89
PF04993	TfoX_N	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	2.68
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	2.68
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.79
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.79
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.89
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	0.89
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.18 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	3.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.57 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.68 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.14 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	3.57 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	3.57 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.68 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.79 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.25 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	3.57 %
Leptospirales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales	3.57 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.89 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.89 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.89 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.25 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	3.57 %
Leptospiraceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae	3.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	2.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.89 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.25 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	3.57 %
Leptospira	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	3.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	2.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	0.89 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.25 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3.57 %
Leptospira perolatii	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira perolatii	3.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	2.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.89 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	0.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.25 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3.57 %
Leptospira perolatii	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira perolatii	3.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	2.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Gemmatimonas groenlandica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas groenlandica	0.89 %
Bacteroidetes bacterium 13_1_20CM_4_60_6	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	0.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.89 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_874951	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
2162886012\|MBSR1b_contig_9766615	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira perolatii	917	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101206117	Not Available	537	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101820603	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1985	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101824189	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300000956\|JGI10216J12902_106603880	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300001213\|JGIcombinedJ13530_101080977	Not Available	547	Open in IMG/M
3300004058\|Ga0055498_10005743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	1447	Open in IMG/M
3300004114\|Ga0062593_100386799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1243	Open in IMG/M
3300004114\|Ga0062593_100705650	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300004114\|Ga0062593_102342271	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300004114\|Ga0062593_103511566	Not Available	503	Open in IMG/M
3300004156\|Ga0062589_100568840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300005093\|Ga0062594_100715723	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300005289\|Ga0065704_10189602	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300005331\|Ga0070670_100388925	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300005332\|Ga0066388_101513507	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300005353\|Ga0070669_101716115	Not Available	547	Open in IMG/M
3300005457\|Ga0070662_100807819	Not Available	797	Open in IMG/M
3300005543\|Ga0070672_100834342	Not Available	812	Open in IMG/M
3300005544\|Ga0070686_100721639	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300005564\|Ga0070664_100532616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1085	Open in IMG/M
3300006196\|Ga0075422_10530959	Not Available	537	Open in IMG/M
3300006224\|Ga0079037_100051154	All Organisms → cellular organisms → Bacteria	3232	Open in IMG/M
3300006844\|Ga0075428_100169560	All Organisms → cellular organisms → Bacteria	2367	Open in IMG/M
3300006871\|Ga0075434_100799974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	959	Open in IMG/M
3300006871\|Ga0075434_102336172	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	537	Open in IMG/M
3300006871\|Ga0075434_102532408	Not Available	514	Open in IMG/M
3300006881\|Ga0068865_101448489	Not Available	614	Open in IMG/M
3300006904\|Ga0075424_100458638	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1360	Open in IMG/M
3300009094\|Ga0111539_10009754	All Organisms → cellular organisms → Bacteria	12117	Open in IMG/M
3300009094\|Ga0111539_13554083	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300009100\|Ga0075418_10027037	All Organisms → cellular organisms → Bacteria	6270	Open in IMG/M
3300009100\|Ga0075418_10829397	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300009100\|Ga0075418_10845872	Not Available	988	Open in IMG/M
3300009100\|Ga0075418_11658439	Not Available	695	Open in IMG/M
3300009100\|Ga0075418_12251688	Not Available	594	Open in IMG/M
3300009147\|Ga0114129_13506209	Not Available	501	Open in IMG/M
3300009156\|Ga0111538_10025785	All Organisms → cellular organisms → Bacteria	7662	Open in IMG/M
3300009156\|Ga0111538_11960739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300009162\|Ga0075423_11740904	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009174\|Ga0105241_12533467	Not Available	514	Open in IMG/M
3300009553\|Ga0105249_11466774	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300009553\|Ga0105249_12073819	Not Available	641	Open in IMG/M
3300009792\|Ga0126374_11069922	Not Available	637	Open in IMG/M
3300010400\|Ga0134122_10252377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1491	Open in IMG/M
3300010400\|Ga0134122_10579658	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300010401\|Ga0134121_12054838	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300010403\|Ga0134123_10094363	All Organisms → cellular organisms → Bacteria	2366	Open in IMG/M
3300012232\|Ga0137435_1021827	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300012951\|Ga0164300_10217367	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300012957\|Ga0164303_10588993	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300012958\|Ga0164299_10249577	All Organisms → cellular organisms → Bacteria → Acidobacteria	1060	Open in IMG/M
3300012961\|Ga0164302_10630417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	782	Open in IMG/M
3300012985\|Ga0164308_11523634	Not Available	615	Open in IMG/M
3300013308\|Ga0157375_12588185	Not Available	606	Open in IMG/M
3300014745\|Ga0157377_10331291	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira perolatii	1015	Open in IMG/M
3300015200\|Ga0173480_10256233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	956	Open in IMG/M
3300015371\|Ga0132258_10547568	All Organisms → cellular organisms → Bacteria	2899	Open in IMG/M
3300015371\|Ga0132258_11400195	All Organisms → cellular organisms → Bacteria	1767	Open in IMG/M
3300015372\|Ga0132256_101370601	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300015373\|Ga0132257_100150355	All Organisms → cellular organisms → Bacteria → Acidobacteria	2728	Open in IMG/M
3300015373\|Ga0132257_101905512	Not Available	765	Open in IMG/M
3300015374\|Ga0132255_100012102	All Organisms → cellular organisms → Bacteria	10182	Open in IMG/M
3300015374\|Ga0132255_104481182	Not Available	592	Open in IMG/M
3300015374\|Ga0132255_106202781	Not Available	506	Open in IMG/M
3300017792\|Ga0163161_11091343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300018083\|Ga0184628_10042754	All Organisms → cellular organisms → Bacteria	2276	Open in IMG/M
3300019362\|Ga0173479_10465670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300025893\|Ga0207682_10547748	Not Available	547	Open in IMG/M
3300025908\|Ga0207643_10256365	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300025918\|Ga0207662_10460474	Not Available	871	Open in IMG/M
3300025923\|Ga0207681_11204843	Not Available	636	Open in IMG/M
3300025923\|Ga0207681_11808962	Not Available	510	Open in IMG/M
3300025926\|Ga0207659_10121453	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira perolatii	2002	Open in IMG/M
3300025933\|Ga0207706_10747620	Not Available	833	Open in IMG/M
3300025933\|Ga0207706_11729835	Not Available	503	Open in IMG/M
3300025940\|Ga0207691_10092603	All Organisms → cellular organisms → Bacteria → Proteobacteria	2707	Open in IMG/M
3300025961\|Ga0207712_11634143	Not Available	577	Open in IMG/M
3300026118\|Ga0207675_100352638	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300027715\|Ga0208665_10112370	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	842	Open in IMG/M
3300027907\|Ga0207428_10180611	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira perolatii	1594	Open in IMG/M
3300027909\|Ga0209382_11496373	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300028587\|Ga0247828_10332410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300028802\|Ga0307503_10072666	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300028802\|Ga0307503_10415612	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300028812\|Ga0247825_10033243	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6	3410	Open in IMG/M
3300031538\|Ga0310888_10019719	All Organisms → cellular organisms → Bacteria	2799	Open in IMG/M
3300031547\|Ga0310887_10067417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1670	Open in IMG/M
3300031547\|Ga0310887_11085435	Not Available	513	Open in IMG/M
3300031847\|Ga0310907_10041657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1729	Open in IMG/M
3300031892\|Ga0310893_10435676	Not Available	580	Open in IMG/M
3300031908\|Ga0310900_10925715	Not Available	713	Open in IMG/M
3300031908\|Ga0310900_11654103	Not Available	543	Open in IMG/M
3300031940\|Ga0310901_10466357	Not Available	561	Open in IMG/M
3300031944\|Ga0310884_10221673	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300031944\|Ga0310884_10844154	Not Available	562	Open in IMG/M
3300032000\|Ga0310903_10471497	Not Available	651	Open in IMG/M
3300032003\|Ga0310897_10386063	Not Available	659	Open in IMG/M
3300032013\|Ga0310906_10033947	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300032017\|Ga0310899_10445670	Not Available	628	Open in IMG/M
3300032075\|Ga0310890_10675257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	807	Open in IMG/M
3300032075\|Ga0310890_11525346	Not Available	551	Open in IMG/M
3300032122\|Ga0310895_10169800	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	958	Open in IMG/M
3300033407\|Ga0214472_10353705	All Organisms → cellular organisms → Bacteria → Acidobacteria	1387	Open in IMG/M
3300033414\|Ga0316619_11248008	Not Available	658	Open in IMG/M
3300033416\|Ga0316622_101000135	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300033480\|Ga0316620_12328449	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas groenlandica	533	Open in IMG/M
3300033487\|Ga0316630_10277878	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1278	Open in IMG/M
3300033513\|Ga0316628_101143249	Not Available	1036	Open in IMG/M
3300034692\|Ga0373917_0027078	Not Available	795	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.68%
Host-Associated	Host-Associated	46.43%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.21%
Plants	Host-Associated → Plants	46.43%
Aquatic	Environmental → Aquatic	4.46%
Bioremediation	Engineered → Bioremediation	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	33.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.50%
Marine	Environmental → Aquatic → Marine	1.79%
Sediment	Environmental → Aquatic → Sediment	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.89%
Metal	Engineered → Bioremediation → Metal	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.57%
Loam	Environmental → Terrestrial → Soil → Loam	2.68%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.89%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.32%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	17.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.89%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	17.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.04%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.46%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034692	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3	Engineered	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0339.00005280	2162886007	Switchgrass Rhizosphere	MSTAETSFLGLLFSGTLALLAGIFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLRAIRSLTVVGALLLACAAGLVAYEVLRVTLSS
MBSR1b_0970.00000160	2162886012	Miscanthus Rhizosphere	MSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLAC
INPhiseqgaiiFebDRAFT_1012061172	3300000364	Soil	MSGTEAIFLALVFVGVLALLAGLILTRLHWRLDIPSYGRGTRFLDVTLHPERYAKDAPFGVIRSVSAIGAALLACAIAVVAWRILQTMLKS*
INPhiseqgaiiFebDRAFT_1018206033	3300000364	Soil	MSTTETSFIGLLFSGTVALLAGMLLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVTDAPLRVIRSLTLIGSVLLACAAGVVAYEILRVTLSS*
INPhiseqgaiiFebDRAFT_1018241891	3300000364	Soil	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKEAPLRAIRSLTVVGVLLLACAAGLVAYEVFRVTLSS*
JGI10216J12902_1066038801	3300000956	Soil	GRRVRTETAFLTLLFAGLTALIAGMMLTRLHWRPDIPPYNRGTRALQVMLHPGRYTRGAPLRTIRTLNVIGSILLAGAAGVVAYELLHTVLRR*
JGIcombinedJ13530_1010809771	3300001213	Wetland	MITTEGAFLILLFSGILALVCGLGLTRVHWRTDIPPYGRRTRFIDVMLHPERYGKDAPLRAIRSLNLLGALLLGAAAGVLAYEIFHTILRQ*
Ga0055498_100057431	3300004058	Natural And Restored Wetlands	MSVTEAAFLILLLSGIAVLLAGLMLTRLYWRPDIPPYGRRTRFLDVTLHPADYVTNAPLRAIRNLNLAGALLLAGAAGVVVYELLQAIALP*
Ga0062593_1003867992	3300004114	Soil	MSTTETSFLGLLFSGTLALLAGMFLTRLHWRQDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRSLTVVGALLLASAAGLVAYEVVRVTLSS*
Ga0062593_1007056501	3300004114	Soil	MSTAETSFLGLLFSGTLALLAGIFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVRDAPLRAIRSLTLVGALLLACAAGVVAYEVVRVTLSS*
Ga0062593_1023422711	3300004114	Soil	MEAAFLGLLFSGIAALLAGVLLTRLHWRTDIPPYGPGTRFLDVTRHPERYVKDAPLGVIRGLMFVGEVLLACAASVVAWEILRTMPRS*
Ga0062593_1035115661	3300004114	Soil	MSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS*
Ga0062589_1005688401	3300004156	Soil	FSGTLALLAGMFLTRLHWRQDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRSLTVVGALLLASAAGLVAYEVVRVTLSS*
Ga0062594_1007157233	3300005093	Soil	MSTTETSFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRSLTVVGALLLASAAGLVAYEVVRV
Ga0065704_101896022	3300005289	Switchgrass Rhizosphere	MSTAETSFLGLLFSGTLALLAGIFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLRAIRSLTVVGALLLACAAGLVAYEVLRVTLSS*
Ga0070670_1003889252	3300005331	Switchgrass Rhizosphere	MSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS*
Ga0066388_1015135073	3300005332	Tropical Forest Soil	MSTTQAAFLSLLSLGVAALLTGVMLTRFHWRSDIPPYGRRTRLLNVMLHPEAYATNAPLGAIRGLNIAGALLLGGAAVVVAYELLQTMLRL*
Ga0070669_1017161152	3300005353	Switchgrass Rhizosphere	MVAASMSTTETDFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLA
Ga0070662_1008078192	3300005457	Corn Rhizosphere	MSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVE
Ga0070672_1008343422	3300005543	Miscanthus Rhizosphere	MSTTETSFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRSLTVVGALLLASAAGLVAYEVVRVTLSS*
Ga0070686_1007216392	3300005544	Switchgrass Rhizosphere	MVAASMSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS*
Ga0070664_1005326161	3300005564	Corn Rhizosphere	FAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS*
Ga0075422_105309592	3300006196	Populus Rhizosphere	MSTAEALFLGLLFTGILALLAGVLTTRLHWRSDIPPYGRRTRFLDVTLHPEAYVADAPLRAIRTLNLTGGLLLAAAVGVAVYDILRTMLAA*
Ga0079037_1000511541	3300006224	Freshwater Wetlands	MSPTEDAFLILLFPGIFVLLTGVGLTRLHWRPDIPPYGRRTRFLDVMLHPERYVKDAPLRAIRSLNLTGALLIAGAAGVSAYEILRTILRP*
Ga0075428_1001695605	3300006844	Populus Rhizosphere	MNATEAVFLALVFTGVLALLAGMILTRVHWRQDIPPYGRQTRFVDVTLHPDRYAKDAPLGVIRCLSAIGAVLLGCAAAVVAREIVMTILRS*
Ga0075434_1007999741	3300006871	Populus Rhizosphere	MLWVRSPKGAWDTWTGRKHRLPRVRSVPSARRASARAHGMSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS*
Ga0075434_1023361722	3300006871	Populus Rhizosphere	VTAEAIFFGLLFSGISTLLGGLLLTRLHWRRDIPPYGRRTKFLDVTLHPEKYAEDAPFGVIRSLNAVGAVLLAGAAVVVTWEILQTLRR*
Ga0075434_1025324081	3300006871	Populus Rhizosphere	LPDEVLFLTLVFAGVLALLAGMILTRAYWRQDIPPYGRQTRFIDVTLHPERYAKDAPFGLIRTLNTVGVLLLASAAAAVVWEVLQTMLA*
Ga0068865_1014484891	3300006881	Miscanthus Rhizosphere	MSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAA
Ga0075424_1004586383	3300006904	Populus Rhizosphere	MAQTIVRAVEARGEGLPDEVLFLTLVFAGVLALLAGMILTRAYWRQDIPPYGRQTRFIDVTLHPERYANDAPFGLIRTLNTVGVLLLASAAAAVVWEVLQTMLT*
Ga0111539_100097548	3300009094	Populus Rhizosphere	MSTAEALFLGLLFTGILALLAGLLTTRLHWRSDIPPYGRRTRFLDVTLHPEAYVADAPLRAIRTLNLTGGLLLAAAVGVAVYDILRTMLAA*
Ga0111539_135540832	3300009094	Populus Rhizosphere	MEAAFLGLLFSGIAALLAGVLLTRLHWRTDIPPYGLGTRFLDVTRHPERYVKDAPLGVIRGLMFVGEVLLACAASVVA
Ga0075418_1002703711	3300009100	Populus Rhizosphere	MIATEAVFLALVFTGVLALLAGMILTRVHWRPDIRPYGRQTRFLDVTLHPERYAKDAPFDVIRSLSAVGAVLLACAVAAVARELLRTMLRS*
Ga0075418_108293972	3300009100	Populus Rhizosphere	MTELRQGAFLGLLFSGILALLAGAMLTRLHWRPDTPPYGRSTRLLDVALHPETYARDAPLRTIRSLNLTGALLLAGAAGVVAYELLHAILRA*
Ga0075418_108458722	3300009100	Populus Rhizosphere	MSTAEALFLGLLFTGILALLAGVLTTRLHWRSDIPPYGRRTRFLDVTLHPEAFVADAPLRAIRILNLTGGLLLAAAVGVAVYDILRTMLAA*
Ga0075418_116584392	3300009100	Populus Rhizosphere	MSTTEAGFLSLLFPGIVALLAGMMLTRIHWRPDIPPYGRQTRFLDVTLHPERYVKDAPLRAIRSLTVAGAILLAAAVSVVVYEILRVMLRS*
Ga0075418_122516881	3300009100	Populus Rhizosphere	MTTENVFLVLLMLGIAALLSAVMLTRFHWRPDAAPYSRRTRFLDVTLHPERYVKDGPLRTIRSLIGMGVCLLAAAILVVAYEIVRSIGTR*
Ga0114129_135062091	3300009147	Populus Rhizosphere	MAARDAAIGADVGRLRKASARAHSMSTTETSFIGLLFSGTLALLAAMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS*
Ga0111538_100257853	3300009156	Populus Rhizosphere	MSTAEALFLGLLFPGILALLAGVLTTRLHWRSDIPPYGRRTRFLDVTLHPEAYVADAPLRAIRTLNLTGGLLLAAAVGVAVYDILRTMLAA*
Ga0111538_119607392	3300009156	Populus Rhizosphere	MTQAAFLILLFSGIVALLGGVMMTRIHWRTDIPPYGRRTRVLDVTRHPEKYVADAPLRAIRALNVTGLLLLAAAISVVVYEILRTIR*
Ga0075423_117409041	3300009162	Populus Rhizosphere	VLAGVLALLAGMMLTRLHWRADIPPYGRDTRFLDVTLHPRRYAEGAPFGLIRVLSSVGALLLAAAIVLVVMEILRTSIGH*
Ga0105241_125334671	3300009174	Corn Rhizosphere	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLHAIRSLTVGGALLLAGAAGLVAFEVFRVTLSS*
Ga0105249_114667742	3300009553	Switchgrass Rhizosphere	MSTTETGFLGLLFSGILARLAGLLLMRLHWRPDIPSFCWHARFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS*
Ga0105249_120738192	3300009553	Switchgrass Rhizosphere	LTTIEAAFLSLLFSGIAALLTGVLLTRLHWRSDIPPYGRNTRFLDVTRHPEKYVTDAPLDAIRRLNLLGALLLAGAAGVVAYQLLQVTLTR*
Ga0126374_110699222	3300009792	Tropical Forest Soil	MSSNANETAFLSLLFLGLFALLAGIMMTRLNWHPDIPPYGLRTRLLDVMRHPERYVKDAPLGVIRSLNLAGVVLLVGAAGVVAYEILRVMRLV*
Ga0134122_102523773	3300010400	Terrestrial Soil	MSATEAVFLALVFTGVPALLAGMILTRVHWRQDIPPYGRQTHFVDVTLHPERYAKDAPFGVIRSLSAIGAVLLGCAAAVVAREIVMTMLRS*
Ga0134122_105796582	3300010400	Terrestrial Soil	MTEEAFLGLLFSGILALLAGVLVTRLHWRADIPPYGRRTRFLDVTLHPEAYVTAAPLRAIRVLNLAGVLLLMGAMGVVVYEIQRVVRTPTNSAR*
Ga0134121_120548381	3300010401	Terrestrial Soil	MSTTEIAFLGLLFSGILALLAGVLVTRLHWRADIPPYGRRTRFLDVTLHPEAYVTAAPLRAIRVLNLAGVLLLMGAMGVVVYEIQRVVRTPTNSAR*
Ga0134123_100943632	3300010403	Terrestrial Soil	MGSGMSATEAAFLGFLFSGITALLAGVMLTRVHWRPDIPPYGLGTRFLDVTRHPERYVKDAPLGAIRGLVFVGGVLLAGAASVVAWEILQTMSR*
Ga0137435_10218273	3300012232	Soil	MSATETSFLGLLFSGTVALLAGMFLTRLHWRPDIPPYGRQTGFLDVTLHPDRYAKDAPLRAIRSLTVVGALLLACAAGVVAYEVLRVTLSS*
Ga0164300_102173672	3300012951	Soil	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKEAPLRAIRSLTVVGVLLLAGAAGLVAFEVFRVTLSS*
Ga0164303_105889931	3300012957	Soil	GFLGLLFSGTLALFAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLHAIRSLTVGGALLLAGAAGLVVFEVFRVTLSS*
Ga0164299_102495773	3300012958	Soil	MLDRILDETETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKEAPLRAIRSLTVVGVLLLACAAGLVAYEVFRVTLSS*
Ga0164302_106304172	3300012961	Soil	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLHAIRSLTVGGALLLAGAAGLVAFEVFRVTLSS*
Ga0164308_115236341	3300012985	Soil	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKEAPLRAIRSLTVVGVLLLACAAGLVAYEVFGVTLSS*
Ga0157375_125881852	3300013308	Miscanthus Rhizosphere	MSTTETSFLGLLFPGTLALIAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDQYVKDAPLRAIRSLTLVGALLLACAAGLVAYEVLRVTLSS*
Ga0157377_103312911	3300014745	Miscanthus Rhizosphere	MSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLA
Ga0173480_102562333	3300015200	Soil	MSTTETDFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS*
Ga0132258_105475686	3300015371	Arabidopsis Rhizosphere	MEAAFLGLLFSGIAALLAGVLLTRLHWRTDIPPYGLGTRFLDVTRHPERYVKDAPLGVIRGLMFVGEVLLACAASVVAWEILRTMPRS*
Ga0132258_114001953	3300015371	Arabidopsis Rhizosphere	MTAEAVFLVLILSGVFALLASVLLTRLYWRPDIPPYGRATRFLDVTLHPERYVGNAPLRAIRTLAFVGALLMACAAAIVAKEIVHVSR*
Ga0132256_1013706012	3300015372	Arabidopsis Rhizosphere	MSTTEAGFLSLLFPGILALLAGIMLTRIHWRPDISPYGRQTRFLDVTLHPERYVKDAPLRTIRSLTVAGALLLAAAVSVVVYEILRVMLRS*
Ga0132257_1001503553	3300015373	Arabidopsis Rhizosphere	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVEEAPLRAIRSLTVVGVLLLACAAGLVAYEVFRVTLSS*
Ga0132257_1019055121	3300015373	Arabidopsis Rhizosphere	MSTTEAGFLSLLFPGILALLAGIMLTRIHWRPDIPPYGRQTRFLDVTLHPERYVKDAPLRTIRSLTVAGALLLAAAVSVVVYEILRVMLRS*
Ga0132255_1000121023	3300015374	Arabidopsis Rhizosphere	MSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDATLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS*
Ga0132255_1044811822	3300015374	Arabidopsis Rhizosphere	MSTTEAGFLSLLFPGILALLAGIMLTRIHWRPDIPPYGRQTRCLDVTLHPERYVKDAPLRTIRSLTVAGALLLAAAVSVVVYEILRVMLRS*
Ga0132255_1062027811	3300015374	Arabidopsis Rhizosphere	MEAAFLGLLFSGIAALLAGVLLTRLHWRTDIPPYGLGTRFLDVTRHPERYVKDAPLGVIRGLMFVGEVLLACAASVVAWETLRTMPRS*
Ga0163161_110913431	3300017792	Switchgrass Rhizosphere	MSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS
Ga0184628_100427542	3300018083	Groundwater Sediment	MSTTETSFLGLLFSGIFALLTGTFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLRAIRSLTVVGALLLACAAGLMAYEVLRVTLSS
Ga0173479_104656702	3300019362	Soil	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRTLTVVGALLLASAAGLVAYEVVRVTLSS
Ga0207682_105477481	3300025893	Miscanthus Rhizosphere	AMVAASMSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS
Ga0207643_102563652	3300025908	Miscanthus Rhizosphere	MVAASMSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS
Ga0207662_104604742	3300025918	Switchgrass Rhizosphere	MSTTETSFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRSLTVVGALLLASAAGLVAYEVVRVTLSS
Ga0207681_112048432	3300025923	Switchgrass Rhizosphere	MSTTETDFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAV
Ga0207681_118089621	3300025923	Switchgrass Rhizosphere	MSTTESSFLGLLLSGTLALIAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVR
Ga0207659_101214533	3300025926	Miscanthus Rhizosphere	MSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS
Ga0207706_107476202	3300025933	Corn Rhizosphere	MSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVT
Ga0207706_117298351	3300025933	Corn Rhizosphere	MSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRSLTVVGALLLASAAGLVAYEVVRVTLSS
Ga0207691_100926035	3300025940	Miscanthus Rhizosphere	MSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVKDAPLRAIRSLTVIGALLLAGAAGL
Ga0207712_116341431	3300025961	Switchgrass Rhizosphere	LTTIEAAFLSLLFSGIAALLTGVLLTRLHWRSDIPPYGRNTRFLDVTRHPEKYVTDAPLDAIRRLNLLGALLLAG
Ga0207675_1003526383	3300026118	Switchgrass Rhizosphere	MSTTETGFLGLLFSGILALLAGLLLMRLHWRPDIPSYGRQTRFLDVVLHPDRYVRDAPLRAIRSLTVIGALLLAGAAGLVAVEVVRVTFSS
Ga0208665_101123702	3300027715	Deep Subsurface	MSPTEDAFLILLFPGIFVLLTGVGLTRLHWRPDIPPYGRRTRFLDVMLHPERYVKDAPLRAIRSLNLTGALLIAGAAGVSAYEILRTILRP
Ga0207428_101806113	3300027907	Populus Rhizosphere	MSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIV
Ga0209382_114963732	3300027909	Populus Rhizosphere	MIATEAVFLALVFTGVLALLAGMILTRVHWRPDIRPYGRQTRFLDVTLHPERYAKDGPFDVIRSLSAVGAVLLA
Ga0247828_103324102	3300028587	Soil	MSTTETSFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLGAIRGLTVVGALLIACAAGLVAYEVVRVTLSS
Ga0307503_100726662	3300028802	Soil	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLRAIRSLSVVGALLLACAAGLVAYEVLRVTLSS
Ga0307503_104156121	3300028802	Soil	MTEVAFLGLLFSGILALLAGMLVTRLHWRPDIPPYGRRTRFLHVTLHPEAYVTAAPLRAIRALNIAGVLLLMGAMGVVVYEIQRVVRTPTNSAR
Ga0247825_100332433	3300028812	Soil	MSTTETSFLGLLFSGTLALLAGMLLTRLHWRPEIPPYGRQTRFLDVTLHPDRYVKDAPLRAIRSLTVVGALLLACAAGLVAYEVVRVTLSS
Ga0310888_100197195	3300031538	Soil	MSTTESSFLGLLLSGTLALIAGMFLTRLHWRPDIPPYGRETRFLDVTLHPDRYVKDAPLRAIRSLTLVGALLLAGAAGLVAYEVLRVTLSS
Ga0310887_100674173	3300031547	Soil	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVEEAPLRAIRSLTVVGVLLLACAAGLVAYEVFRVTLSS
Ga0310887_110854351	3300031547	Soil	MSTTEAGFLSLLFPGILALLAGIMLTRIHWRPDIPPYGRQTRFLDVTLHPERYVKDAPLRTIRSLTVAGALLLAAAVSVVVYEILRVMLRS
Ga0310886_104452301	3300031562	Soil	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLHAIRSLTVGGALLL
Ga0310907_100416573	3300031847	Soil	MSTTETLLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS
Ga0310893_104356761	3300031892	Soil	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLRAIRSLTLVGALLLVCAAGLVAYEVVRVTLSS
Ga0310900_109257151	3300031908	Soil	MSTTEALFLGLLFTGILALLAGVLTTRLHWRSDIPPYGRRTRFFDVTLHPEAYVADAPLRAIRILNLTGGLLLAAAVGVAVYEILRTMLAA
Ga0310900_116541031	3300031908	Soil	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKEAPLRAIRSLTVVGVLLLACAAGLVAYEVFRVTLSS
Ga0310901_104663572	3300031940	Soil	MSTTESSFLGLLLSGTLALIAGMFLTRLHWRPDIPPYGRQTRFLNVTLHPDRYVKDAPLRAIRSLTVVGALLLACAAGLVAYEVLRVTLSS
Ga0310884_102216733	3300031944	Soil	LANGMSTTESSFLGLLLSGTLALIAGMFLTRLHWRPDIPPYGRETRFLDVTLHPDRYVKDAPLRAIRSLTLVGALLLAGAAGLVAYEVLRVTLSS
Ga0310884_108441542	3300031944	Soil	VRSVPSARRASARAHGMSTTETSFIGLLFAGTLALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS
Ga0310903_104714972	3300032000	Soil	MSTTESSFLGLLLSGTLALIAGMFLTRLHWRPDIPPYGRETRFLDVTLHPDRYVKDAPLRAIRSLTVGGALLLACAAGLVAYEVVRVTLSS
Ga0310897_103860632	3300032003	Soil	LALLAGMLLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRVIRSLTVAGPLLLACAAGVVAYEIVRVTLSS
Ga0310906_100339474	3300032013	Soil	MSTTESSFLGLLLSGTLALIAGMFLTRLHWRPDIPPYDRQTRVLDVTLHPDRYVKDAPLRAIRSLTLVGALLLAGAAGLVAYEVLRVTLSS
Ga0310899_104456701	3300032017	Soil	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKEAPLRAIRSLTVVGVLLLACAAGLVAYEVFRVTLSS
Ga0310890_106752572	3300032075	Soil	MNTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKDAPLHAIRSLTVGGALLLAGAAGLVAFEVFRVTLSS
Ga0310890_115253462	3300032075	Soil	MTQAAFLILLFSGIVALLGGVMMTRIHWRTDIPPYGRRTRVLDVTRHPEKYVADAPLSAIRALNVTGLLLLAAAISVVVYEILRTIR
Ga0310895_101698001	3300032122	Soil	MSTTETGFLGLLFSGTLALLAGMFLTRLHWRPDIPPYGRQTRFLDVTLHPDRYVKEAPLRAIRSLTVVGVLLLACAAGL
Ga0214472_103537053	3300033407	Soil	MSATEAVFLALVFTGVLALLAGMILTRVHWRQDIPPYGRQTRFVDVTLHPERYAKDAPFGVIRSLSAIGVVLLGCAAAVVTREIVMTMLRS
Ga0316619_112480082	3300033414	Soil	MSATEAVFLALVFTGVLALLAGMILTRVHWRQDIPPYGRQTRFVDVTLHPERYAKDAPFGVIRSLSAIGAVLLGCAAAVVAREIVMTILRSCVRVR
Ga0316622_1010001352	3300033416	Soil	MVAQEDAFLLLFFAGLFALLVGVGLTRLHWRPDIPPYGRGTRFLDVTLHPERYAKNAPLPAIRSLNLIGALLVAAAAGISVYEMVRTMMLG
Ga0316620_123284492	3300033480	Soil	VVDHEPTYQGRVTTEAVFLTLVFSGVLALLAGMVLTRLHWRPDIPPYGRRTRFLDVTLHPERYTKDAPLGVIRSLSAVGAVLLAGAAAAVAWELLRTMLRS
Ga0316630_102778781	3300033487	Soil	MSPTEDAFLILLFPGIFVLLTGVGLTRLHWGPDIPPYGRRTRFLDVMLHPERYVKDAPLRAIRSLNLTGALLIAGAAGVSAYEILRTILRP
Ga0316628_1011432492	3300033513	Soil	MSATEAVFLALVFTGVLALLAGMILTRVHWRQDIPPYGRQTRFVDVTLHPERYAKDAPFGVIRSLSAIGAVLLGCAAAVVAREI
Ga0373917_0027078_83_358	3300034692	Sediment Slurry	MSPTEGIFLALIFTGVLALLAGMILTRLHWRQDIPPYGRHTRFVDVTLHPERYARDAPFAVIRSLSAIGAVLLACAAAVVATEILRTMLRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084420

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences