Metagenome Family F084389

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084389
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	47 residues
Representative Sequence	RIKANWASSEGAEARTDALRITHTWIRTRGTWQIIGGMSAPVNANGQ
Number of Associated Samples	99
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.79 %
% of genes near scaffold ends (potentially truncated)	97.32 %
% of genes from short scaffolds (< 2000 bps)	91.96 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (21.429 % of family members)
Environment Ontology (ENVO)	Unclassified (32.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.964 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 40.00% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF08002	DUF1697	27.68
PF00561	Abhydrolase_1	5.36
PF03734	YkuD	4.46
PF02630	SCO1-SenC	3.57
PF00248	Aldo_ket_red	2.68
PF00106	adh_short	1.79
PF00211	Guanylate_cyc	1.79
PF12697	Abhydrolase_6	1.79
PF16864	Dimerisation2	1.79
PF02774	Semialdhyde_dhC	0.89
PF02518	HATPase_c	0.89
PF13181	TPR_8	0.89
PF06580	His_kinase	0.89
PF01272	GreA_GreB	0.89
PF12804	NTP_transf_3	0.89
PF13466	STAS_2	0.89
PF01118	Semialdhyde_dh	0.89
PF13489	Methyltransf_23	0.89
PF00583	Acetyltransf_1	0.89
PF06736	TMEM175	0.89
PF00072	Response_reg	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	27.68
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	4.46
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	4.46
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	3.57
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	3.57
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.79
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.89
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.89
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.89
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.89
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.89
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	67.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	67.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	34.82 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	34.82 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	34.82 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.89 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	34.82 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.89 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	34.82 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.89 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.89 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17165699	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1257	Open in IMG/M
2170459022\|GZEQPF102H8JBE	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
2189573000\|GPBTN7E02I7LSS	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	503	Open in IMG/M
2228664022\|INPgaii200_c1069081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	620	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100725253	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	702	Open in IMG/M
3300000890\|JGI11643J12802_11629366	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1087	Open in IMG/M
3300000956\|JGI10216J12902_120472137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300001431\|F14TB_103283573	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300002126\|JGI24035J26624_1021581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300002128\|JGI24036J26619_10037507	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300002899\|JGIcombinedJ43975_10107594	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	515	Open in IMG/M
3300004643\|Ga0062591_101996752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	598	Open in IMG/M
3300005172\|Ga0066683_10819457	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005177\|Ga0066690_10011048	All Organisms → cellular organisms → Bacteria → Proteobacteria	4632	Open in IMG/M
3300005179\|Ga0066684_10799634	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300005180\|Ga0066685_11162968	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	501	Open in IMG/M
3300005184\|Ga0066671_10953647	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	541	Open in IMG/M
3300005330\|Ga0070690_100184564	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300005332\|Ga0066388_105309719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300005344\|Ga0070661_100722605	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	813	Open in IMG/M
3300005364\|Ga0070673_102068802	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300005438\|Ga0070701_11234157	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005439\|Ga0070711_101268825	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300005439\|Ga0070711_102076368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	500	Open in IMG/M
3300005545\|Ga0070695_100499376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	941	Open in IMG/M
3300005556\|Ga0066707_10021996	All Organisms → cellular organisms → Bacteria	3401	Open in IMG/M
3300005574\|Ga0066694_10213107	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	917	Open in IMG/M
3300005574\|Ga0066694_10436940	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005587\|Ga0066654_10716126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300005764\|Ga0066903_100224433	All Organisms → cellular organisms → Bacteria	2854	Open in IMG/M
3300005764\|Ga0066903_105358869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300006032\|Ga0066696_10962559	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300006237\|Ga0097621_100269238	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300006791\|Ga0066653_10623363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	550	Open in IMG/M
3300006796\|Ga0066665_10461642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1046	Open in IMG/M
3300006797\|Ga0066659_10058230	All Organisms → cellular organisms → Bacteria	2474	Open in IMG/M
3300006854\|Ga0075425_102336563	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	594	Open in IMG/M
3300009012\|Ga0066710_100041697	All Organisms → cellular organisms → Bacteria	5548	Open in IMG/M
3300009012\|Ga0066710_104010773	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	551	Open in IMG/M
3300009137\|Ga0066709_100994980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1227	Open in IMG/M
3300009137\|Ga0066709_103270005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	590	Open in IMG/M
3300009137\|Ga0066709_104149550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300009553\|Ga0105249_11563730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	732	Open in IMG/M
3300010043\|Ga0126380_10978774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	710	Open in IMG/M
3300010304\|Ga0134088_10483286	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300010322\|Ga0134084_10046714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1263	Open in IMG/M
3300010323\|Ga0134086_10438585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300010359\|Ga0126376_11533269	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300010361\|Ga0126378_10631399	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300010361\|Ga0126378_12193314	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300010362\|Ga0126377_11093294	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	866	Open in IMG/M
3300010362\|Ga0126377_11934176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	666	Open in IMG/M
3300010398\|Ga0126383_11435227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	780	Open in IMG/M
3300010398\|Ga0126383_11980527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300010399\|Ga0134127_10556497	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1169	Open in IMG/M
3300011271\|Ga0137393_10472920	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1075	Open in IMG/M
3300012198\|Ga0137364_10069838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2400	Open in IMG/M
3300012198\|Ga0137364_10906444	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	667	Open in IMG/M
3300012200\|Ga0137382_10553741	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	819	Open in IMG/M
3300012206\|Ga0137380_10642905	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	925	Open in IMG/M
3300012207\|Ga0137381_10728274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	861	Open in IMG/M
3300012209\|Ga0137379_11385747	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	607	Open in IMG/M
3300012211\|Ga0137377_10525896	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1121	Open in IMG/M
3300012211\|Ga0137377_11228585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	679	Open in IMG/M
3300012350\|Ga0137372_10504051	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	900	Open in IMG/M
3300012354\|Ga0137366_10705941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	719	Open in IMG/M
3300012356\|Ga0137371_10457074	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300012358\|Ga0137368_10134068	All Organisms → cellular organisms → Bacteria	1853	Open in IMG/M
3300012360\|Ga0137375_10239372	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300012362\|Ga0137361_11436609	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300012685\|Ga0137397_10115958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1971	Open in IMG/M
3300012929\|Ga0137404_10355989	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300012948\|Ga0126375_10231346	All Organisms → cellular organisms → Bacteria → Proteobacteria	1237	Open in IMG/M
3300012948\|Ga0126375_11723488	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012955\|Ga0164298_10719413	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300012957\|Ga0164303_10313920	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	930	Open in IMG/M
3300012976\|Ga0134076_10478245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300012984\|Ga0164309_10315733	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300012989\|Ga0164305_10913526	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300013307\|Ga0157372_11916762	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	681	Open in IMG/M
3300014166\|Ga0134079_10065097	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300015357\|Ga0134072_10101382	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300016294\|Ga0182041_10416359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1147	Open in IMG/M
3300016371\|Ga0182034_10977988	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	730	Open in IMG/M
3300018431\|Ga0066655_10750037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	662	Open in IMG/M
3300018433\|Ga0066667_11136891	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300018482\|Ga0066669_12017673	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300019362\|Ga0173479_10053495	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300019789\|Ga0137408_1026033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1446	Open in IMG/M
3300019885\|Ga0193747_1088171	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300020018\|Ga0193721_1000448	All Organisms → cellular organisms → Bacteria	11688	Open in IMG/M
3300021411\|Ga0193709_1079738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	730	Open in IMG/M
3300021475\|Ga0210392_10160923	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1542	Open in IMG/M
3300021560\|Ga0126371_11409069	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300024279\|Ga0247692_1005583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2035	Open in IMG/M
3300024331\|Ga0247668_1066310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300025915\|Ga0207693_10661278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	811	Open in IMG/M
3300025925\|Ga0207650_10791822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	803	Open in IMG/M
3300026307\|Ga0209469_1009557	All Organisms → cellular organisms → Bacteria	3708	Open in IMG/M
3300026307\|Ga0209469_1074288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1027	Open in IMG/M
3300026312\|Ga0209153_1149795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	872	Open in IMG/M
3300026313\|Ga0209761_1191286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	913	Open in IMG/M
3300026323\|Ga0209472_1128114	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300026330\|Ga0209473_1321477	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300026490\|Ga0257153_1063094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	751	Open in IMG/M
3300026547\|Ga0209156_10214526	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	912	Open in IMG/M
3300028146\|Ga0247682_1040007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	840	Open in IMG/M
3300028708\|Ga0307295_10051031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1068	Open in IMG/M
3300028782\|Ga0307306_10117613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	719	Open in IMG/M
3300028799\|Ga0307284_10151605	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	894	Open in IMG/M
3300028885\|Ga0307304_10039947	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1693	Open in IMG/M
3300031847\|Ga0310907_10818696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.86%
Host-Associated	Host-Associated	7.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.86%
Plants	Host-Associated → Plants	7.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.93%
Loam	Environmental → Terrestrial → Soil → Loam	8.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	31.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459022	Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002126	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Host-Associated	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02706070	2088090014	Soil	VNWATSEGVEVRKDALRITHTWIRTHGTWQIVGGMSAPVNAEGK
FA2_06573320	2170459022	Grass Soil	AEIKTDSLRITHTWTRTPGRWQIIGGMSSPVNATGQ
N55_05458150	2189573000	Grass Soil	NGEGAEARTDRLRITHTWIRTGGTWQIIGGMSSPVNAEGK
INPgaii200_10690812	2228664022	Soil	ADIAINHYRIKLNWARIDNGEAARTDGLRITHTWIRIGDRWQIIGGMSAPVNPDGK
INPhiseqgaiiFebDRAFT_1007252532	3300000364	Soil	IKATWATSEGVEVRKDILRITHTWIRTHGTWQILGGMSAPVNSEGK*
JGI11643J12802_116293663	3300000890	Soil	RINMTWANSAGAEVRTDRMRITHTWIRAQDTWQIIGGMSSPVNANSQ*
JGI10216J12902_1204721372	3300000956	Soil	WADGAGAEVRTDRLRITHTWTRTHGAWHIIGGMSSPVNADGK*
F14TB_1032835732	3300001431	Soil	RIKITWANGEGAEVKNDALRIMHTWLRTDGTWQIAGGMSAPVNAEGK*
JGI24035J26624_10215811	3300002126	Corn, Switchgrass And Miscanthus Rhizosphere	DLAMDYYRIKATWANSTGAEVKTDRIRITHTWIRTAGTWQIIGGMSSPVDATGQ*
JGI24036J26619_100375071	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MDYYRIKATWTDSTGAEVRTDGLRITHTWTRTHGTWQIIGGMSSPVNATGQ*
JGIcombinedJ43975_101075942	3300002899	Soil	YRIKATWAASDKSKVRTDALRITHTWIRTHDTWQILGGMSAPVNEKGQ*
Ga0062591_1019967522	3300004643	Soil	YRIKANWASSDTGEVVRTDAMRITHTWIRTNGTWQILGGMSAPVNADGK*
Ga0066683_108194571	3300005172	Soil	WATSEGVEVRKDTLRITHTWIRTHGTWQILGGMSAPVNSEGK*
Ga0066690_100110487	3300005177	Soil	RIKATWANSKGVEVKTDALRITHTWIRTRDTWQIIAGMSAQVNAEGK*
Ga0066684_107996342	3300005179	Soil	ANGAGAEGKTDRLRITHTWIRTHGTWQIIGGMSSPLTATGQ*
Ga0066685_111629681	3300005180	Soil	YYRINATWANGAGVEVRTDRLRITHTWTRTHGTWQIIGGMSLPCERGG*
Ga0066671_109536471	3300005184	Soil	RATWSGEKQPGSKAEALRITHTWIRHDGTWQIFGGMSAPVNAQGK*
Ga0070690_1001845642	3300005330	Switchgrass Rhizosphere	GDLAMDYYRIKATWANSTGAEVKTDRIRITHTWIRKDGTWQIIGGMSSPVDATGQ*
Ga0066388_1053097191	3300005332	Tropical Forest Soil	DIALNYYRISLTWANRQGAEFRTDKLRITHTWIRTHDTWQIIGGMSSPANADGQ*
Ga0070661_1007226051	3300005344	Corn Rhizosphere	DYYRIKATWANSTGAEVKTDRIRITHTWIRKEGTWQIIGGMSSPVNTAGQ*
Ga0070673_1020688022	3300005364	Switchgrass Rhizosphere	RIKATWTNTAGAEVKNDRMRITHTWIRTHGMWQIIGGMSAPVNAEGQ*
Ga0070701_112341571	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	TGDLALDYYRIKATWANSTGAEVRTDRLRITHTWTRTHGTWQIIGGMSSPVNTAGR*
Ga0070711_1012688251	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MDYYRIKATWANSTGAEVRTDSLRITHTWTRTHGTWQIIGGMSSPVNATGQ*
Ga0070711_1020763681	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	INHYRIKATWPNSEGAEVKTDALRITHTWIRTNRTWQILGGMSVPVSDKGQ*
Ga0070695_1004993761	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ATWTNTAGAEVKNDRMRITHTWIRTHGMWQIIGGMSAPVNAEGQ*
Ga0066707_100219961	3300005556	Soil	IKTDAFRITHTWMRTHGTWQILGGMSAPVNSEGK*
Ga0066694_102131072	3300005574	Soil	LAIHVTGDVAINHYRIEATRAASDDSKVRTDVLRITHTWVRAHDTWQILGGISAPVNDKGQ*
Ga0066694_104369401	3300005574	Soil	DYYRINATWANSQGTEVRTDRLRITHTWIRTGGTWQIIGGMSSPVNAESK*
Ga0066654_107161261	3300005587	Soil	SKVRTDVLRITHTWVRAHDTWQILGGISAPVNDKGQ*
Ga0066903_1002244333	3300005764	Tropical Forest Soil	MNWAKGEQPETKNDTMRITHTWIRTDGTWQIIGGMSAPVNADGK*
Ga0066903_1053588691	3300005764	Tropical Forest Soil	AGAEVRTDRIRVTHTWLRTHGDWQIVGGMSSPVNAEGQ*
Ga0066696_109625591	3300006032	Soil	EGVGVKTDALRITHTWIRTHAIWQIIGGMSAPVNAEGK*
Ga0097621_1002692382	3300006237	Miscanthus Rhizosphere	EAAGPEVTRITHTWIRIDGRWQILGGMSAPVNAEGK*
Ga0066653_106233631	3300006791	Soil	VEARKDAFRITHTWIRTHGTWQILGGMSAPVDAEGK*
Ga0066665_104616421	3300006796	Soil	GVEVRKDTLRITHTWIRTHGTWQILGGMSAPVNSEGK*
Ga0066659_100582301	3300006797	Soil	VRKDTLRITHTWIRTHGTWQILGGMSAPVNSEGK*
Ga0075425_1023365632	3300006854	Populus Rhizosphere	WANSTGAQVRSDRLRITHTWIRTRGTWQIIGGMSSPVNAEGK*
Ga0066710_10004169712	3300009012	Grasslands Soil	AINHYRINAAWTNGEGGKVRTDRLRVTHTWIRTGGTWQIIGGMSSPVNTEGK
Ga0066710_1040107731	3300009012	Grasslands Soil	IEQLAIQVTGDIAINHYRIKANWATSEGVEVRKDTLRITHSWIRTHGTWQILGGMSAPVNSEGK
Ga0066709_1009949801	3300009137	Grasslands Soil	AEARTDALRITHTWIRTRGTWQIIGGMSAPVNANGQ*
Ga0066709_1032700051	3300009137	Grasslands Soil	IEQLAIQVTGDIAINHYRIKANWATSEGVEVRKDTLRITHSWIRTHGTWQILGGMSAPVNSEGK*
Ga0066709_1041495502	3300009137	Grasslands Soil	YRIKANWATSEGAEVRTDVLRITHTWIHTHGTWQILGGMSAPVNAKGQ*
Ga0105249_115637301	3300009553	Switchgrass Rhizosphere	YRINANWANGAGAELRIDRLRITHTWIRTHDTWQIIGGMSSPVNADGQ*
Ga0126380_109787741	3300010043	Tropical Forest Soil	VKITGDIAIDHYRIKLNWVRIDNGEAARTDGLRITHTWVRTGDTWQILGGMSAPVNSEGK
Ga0134088_104832861	3300010304	Grasslands Soil	RIKANWASSEGAEARTDALRITHTWIRTRGTWQIIGGMSAPVNANGQ*
Ga0134084_100467141	3300010322	Grasslands Soil	HYRIKANWASSEGAEARTDALRITHTWIRTRGTWQIIGGMSAPVNANGQ*
Ga0134086_104385851	3300010323	Grasslands Soil	DIAMDYYRINATWANGAGAEVRTDRLRITHTWIRTHGTWQIIGGMSSPVNANGQ*
Ga0126376_115332692	3300010359	Tropical Forest Soil	DIAMDYYRIKATWANSTGAEVTTDRIRITHTWIRTHGTWQIIGGMSSPVNADGQ*
Ga0126378_106313991	3300010361	Tropical Forest Soil	IATNYYRIDFTWANSTGAEVKTDRMRITHTWIRTRGTWQIIGGMSSPVNATGQ*
Ga0126378_121933141	3300010361	Tropical Forest Soil	RIKATWANREGAEVRTDALRITHTWLRTHGAWQIIGGMSAPVNSEGK*
Ga0126377_110932941	3300010362	Tropical Forest Soil	YRIKITWANGQNAEARTDTMRITHTWIKTNGSWQIIGGMSAPVNADGK*
Ga0126377_119341762	3300010362	Tropical Forest Soil	YYRIKATWANREGAEVRTDALRITHTWLRTHGAWQIIGGMSAPVNSEGK*
Ga0126383_114352271	3300010398	Tropical Forest Soil	AIDHYRIKLNWARIDNGEAARTDGLRITHTWVRTGDTWQILGGMSAPVNSEGK*
Ga0126383_119805271	3300010398	Tropical Forest Soil	IATNYYRIDFTWANSAGAEVKTDRLRITHTWIRTRGTWQIIGGMSSPVNETGR*
Ga0134127_105564971	3300010399	Terrestrial Soil	KANWAKGNSGDILQTDAMRITHTWIRTNGTWQILGGMSAPVNEKGQ*
Ga0137393_104729202	3300011271	Vadose Zone Soil	VAINHYRIKANWANNEGAEVRTDALRITHTWIRTHGTWQIIGGMSAPVNSEGK*
Ga0137364_100698384	3300012198	Vadose Zone Soil	TGDVAINHYRIKATWAASDDSEVRTNVLRITHTWVRAHDTWQILGGMSAPVNDKGQ*
Ga0137364_109064442	3300012198	Vadose Zone Soil	TWANNEGAEVRTDAFRITHTWIRTHDNWQIIGGMSAPVNPEGK*
Ga0137382_105537411	3300012200	Vadose Zone Soil	TWADNEGVGVKTDALRITHTWIRTHGIWQIIGGMSAPVNAEGK*
Ga0137380_106429051	3300012206	Vadose Zone Soil	NNEGAEVRTDVLRITHTWIRAHDTWQILGGMSAPVNEKGQ*
Ga0137381_107282742	3300012207	Vadose Zone Soil	VHVTGDVAINHYRIKATWAASDDSKVRTDVLRITHTWVRAHDTWQILGGRPTTVNKKGQ*
Ga0137379_113857471	3300012209	Vadose Zone Soil	WATSETAKVQTDALRITHTWIRTHGTWQILGGMSAPVNADGK*
Ga0137377_105258961	3300012211	Vadose Zone Soil	KATWANNEGAEVRTDAFRITHTWIRTHDNWQIIGGMSAPVNPEGK*
Ga0137377_112285851	3300012211	Vadose Zone Soil	IAINHYRINGAWTNGEGGKVRTDRLRITHTWIRTGGTWQIIGGMSSPVNTEGK*
Ga0137372_105040511	3300012350	Vadose Zone Soil	WATSEGVELRKDTLRITHTWIRTHGTWQILGGMSAPVNSEGK*
Ga0137366_107059411	3300012354	Vadose Zone Soil	SKVRTDVLRITHTWVRAHGTWQILGGMSAPINDKGQ*
Ga0137371_104570741	3300012356	Vadose Zone Soil	ANWATSETAKARTDALRITHTWIRTRGAWQILGGMSAPVNEKGQ*
Ga0137368_101340681	3300012358	Vadose Zone Soil	ATSEGVEVRKDALRITHTWIRTHGTWQILGGMSAPVDAEGK*
Ga0137375_102393721	3300012360	Vadose Zone Soil	IKANWATSEGVEVRKDALRITHTWIRTHGTWQILGGMSAPVDAEGK*
Ga0137361_114366092	3300012362	Vadose Zone Soil	AIDHYRIKATWSASDESKVRTDVLRITHTWVRAHDTWQILGGMSAPVNDEGQ*
Ga0137397_101159581	3300012685	Vadose Zone Soil	GDIAMDYYRIKATWANSTGAEVRTDRIRITHTWFRTHGTWQIIGGMSSPVNATGQ*
Ga0137404_103559891	3300012929	Vadose Zone Soil	ANWAASGTAKVRTDALRITHTWIRTHGTWQILGGMSAPVNAEGK*
Ga0126375_102313461	3300012948	Tropical Forest Soil	TGKVVRTDALRITHTWIKTNGTWQIIGGMSAPVNADGK*
Ga0126375_117234882	3300012948	Tropical Forest Soil	MTAGIAMDYYRINVTWANSAGTEVKTDRLPITHTWIRTHGTWQIIVGMSSPVNATGQ*
Ga0164298_107194131	3300012955	Soil	IKATWANSTGAEVSTDRLRITHTWTLTHGTWQIIGGMSSPVNATGQ*
Ga0164303_103139201	3300012957	Soil	LAMDYYRIKATWANSTGAEVKTDRIRITHTWIRTAGTWQIIGGMSSPVNTAGQ*
Ga0134076_104782451	3300012976	Grasslands Soil	RIRANWANNEGAEVRTDVLRITHTWIRAHDTWQILGGMSAPVNEKGQ*
Ga0164309_103157331	3300012984	Soil	KATWANSTGAEVKTDRIRITHTWIRKDGTWQIIGGMSSPVNTAGQ*
Ga0164305_109135261	3300012989	Soil	GRTESNTEVIRITHTWLRAHGSWQIIGGMSAPVNAEGK*
Ga0157372_119167621	3300013307	Corn Rhizosphere	IINWTNSTNTGADAITNKIRITHTWLRTRDTWVILGGMSAPVNEHGQ*
Ga0134079_100650971	3300014166	Grasslands Soil	WTKKDTGEVARTDAMRITHTWIRTNGTWQIIGGMSAPVNADGK*
Ga0134072_101013821	3300015357	Grasslands Soil	GDVAINYYRIKATWSNREGVEVKADALRITHTWIRTHGTWQIIAGMSAQVNAEGK*
Ga0182041_104163591	3300016294	Soil	NGAGTEVKTDRLRITHAWIRTHGTWQIIGGMSSPVNATGQ
Ga0182034_109779881	3300016371	Soil	ANSEGVEVRADKLRITHTWIRTGGTWQIIGGMSSPVNAKGK
Ga0066655_107500372	3300018431	Grasslands Soil	DVAIDHYRIKATWAPSDDSKVRTDVLRITHTWIRAHDTWQILGGMSAPVNDKGQ
Ga0066667_111368911	3300018433	Grasslands Soil	TSETAKARTDALRITHTWIRTRGAWQILGGMSAPVNEKGQ
Ga0066669_120176732	3300018482	Grasslands Soil	TNHYQSKANGATSQPAKAMTDAWRITHTWIRTRGAWQILGGMSAPVNEKGQ
Ga0173479_100534952	3300019362	Soil	DLAMDYYRIKATWADNTGAEVKTDRIRITHTWIRTHGTWQIIGGMSSPVNATGQ
Ga0137408_10260333	3300019789	Vadose Zone Soil	ATNEGVEVRKDALRITHTWIRNHGTWQIVGGMSAPVNAKGQ
Ga0193747_10881711	3300019885	Soil	IKATWAANDDSKVRTDVFRITHTWIRAHDTWQILGGMSAPVDDKGQ
Ga0193721_10004481	3300020018	Soil	AANDDSKVRTDVFRITHTWIRAHDTWQILGGMSAPVDDKGQ
Ga0193709_10797382	3300021411	Soil	WGGPRPTESKTEFLRITHTWICTHGAWQIIGGMSAPVNANGQ
Ga0210392_101609233	3300021475	Soil	ANSTGAEVKTDSLRITHTWTRKHGTWQIIGGMSSPVNATGQ
Ga0126371_114090691	3300021560	Tropical Forest Soil	AVDSQATRITHTWIRIDGRWQILGGMSAPVNAEGK
Ga0247692_10055832	3300024279	Soil	TGPTESNTEILRATHTWLRTHGAWQIIGGMAAPVNAEGK
Ga0247668_10663101	3300024331	Soil	GPTESNTEILRATHTWLRTHGAWQIIGGMAAPVNAEGK
Ga0207693_106612781	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	INATWANGAGAEVRTDRFRITHTWTRTHGTWQIIGGMSSPVNADGQ
Ga0207650_107918221	3300025925	Switchgrass Rhizosphere	TQVTGDLAMDYYRIKATWANGTGAEVRTDRLRITHTWTRTHGTWQIIGGMSSPVNTAGR
Ga0209469_10095571	3300026307	Soil	SEGVEVRKDTLRITHTWIRTHGTWQILGGMSAPVNSEGK
Ga0209469_10742881	3300026307	Soil	WAPSDDSKVRTDVLRITHTWIRAHDTWQILGGMSAPVNDKGQ
Ga0209153_11497951	3300026312	Soil	HYRIKLNWAKNDTGEVARTDAMRITHTWIRTNGAWQIIGGMSAPVNAAGK
Ga0209761_11912861	3300026313	Grasslands Soil	SEGAEARTDALRITHTWIRTRGTWQIIGGMSAPVNANGQ
Ga0209472_11281141	3300026323	Soil	PGPTESNTEILRATHTWLRTHGAWQIIGGMAAPVNAEGK
Ga0209473_13214771	3300026330	Soil	IEQLAIQVTGDIAINYYRIKLNWATSEGVEARKDAFRVTHIWIRTHGTWQILGGMSAPVDAEGK
Ga0257153_10630942	3300026490	Soil	IEQLAICVIGDVAIDHYRIKMNWANREGPDATTEALRITHTWIRTHGVWQIIGGMAAPVNSEGK
Ga0209156_102145263	3300026547	Soil	TWAASDDSKVRTDVLRITHTWVRAHDTWQILGGMSAPVNDKGQ
Ga0247682_10400071	3300028146	Soil	RIIAMWADSTGAEAKTDKMRITHTWIRTHGTWQIIGGMSSPVNANGR
Ga0307295_100510313	3300028708	Soil	GDMAMDYYRIKATWADGTGAEVRTDRLRITHTWIRTHGTWQIIGGMSSPLNTAGQ
Ga0307306_101176131	3300028782	Soil	YRIKATWADNTGAEVRTDGLRVAHAWTRTHGTWQIIGGMSSPVNATGQ
Ga0307284_101516051	3300028799	Soil	ADNTGAEVRTDGLRVAHAWTRTHGTWQIIGGMSSPLNATGQ
Ga0307304_100399474	3300028885	Soil	YRIKANWATNEGVEVRKDALRITHTWIHNHGTWQIVGGMSAPVNAKGQ
Ga0310907_108186961	3300031847	Soil	NATWADETGAEVRTDRMRITHTWIRTHGTWQIIGGMSSPVNPEGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084389

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences