Metagenome / Metatranscriptome Family F084375

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084375
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	52 residues
Representative Sequence	MIAWIAALFTGPLLAGFAVYLCRGPRRDRRLAREQIAEWQILAEIERHENLR
Number of Associated Samples	79
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	91.96 %
% of genes near scaffold ends (potentially truncated)	15.18 %
% of genes from short scaffolds (< 2000 bps)	89.29 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.250 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (22.321 % of family members)
Environment Ontology (ENVO)	Unclassified (38.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.964 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.50% β-sheet: 0.00% Coil/Unstructured: 37.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00732	GMC_oxred_N	10.81
PF14026	DUF4242	3.60
PF03704	BTAD	2.70
PF01565	FAD_binding_4	1.80
PF01656	CbiA	0.90
PF00202	Aminotran_3	0.90
PF00501	AMP-binding	0.90
PF04185	Phosphoesterase	0.90
PF17032	zinc_ribbon_15	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	10.81
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	2.70
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	2.70
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
All Organisms	root	All Organisms	43.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
cellular organisms	root	All Organisms → cellular organisms	43.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.93 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.89 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.57 %
Thiolinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiolinaceae	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	3.57 %
Thiolinea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiolinaceae → Thiolinea	0.89 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	3.57 %
Thiolinea disciformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiolinaceae → Thiolinea → Thiolinea disciformis	0.89 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.25 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.57 %
Frankia asymbiotica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia asymbiotica	0.89 %
Thiolinea disciformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiolinaceae → Thiolinea → Thiolinea disciformis	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573004\|GZGWRS401CJ3RN	Not Available	511	Open in IMG/M
3300004479\|Ga0062595_100709092	Not Available	810	Open in IMG/M
3300004479\|Ga0062595_100836098	Not Available	765	Open in IMG/M
3300004633\|Ga0066395_10019774	All Organisms → cellular organisms → Bacteria	2659	Open in IMG/M
3300005164\|Ga0066815_10027110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	839	Open in IMG/M
3300005175\|Ga0066673_10442304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
3300005332\|Ga0066388_100252373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2403	Open in IMG/M
3300005332\|Ga0066388_106238241	Not Available	602	Open in IMG/M
3300005332\|Ga0066388_107702914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiolinaceae → Thiolinea → Thiolinea disciformis	540	Open in IMG/M
3300005434\|Ga0070709_10453317	Not Available	967	Open in IMG/M
3300005436\|Ga0070713_100635866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1015	Open in IMG/M
3300005456\|Ga0070678_100827651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	842	Open in IMG/M
3300005713\|Ga0066905_100560458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	961	Open in IMG/M
3300005764\|Ga0066903_100201644	All Organisms → cellular organisms → Bacteria	2978	Open in IMG/M
3300005764\|Ga0066903_100635592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1861	Open in IMG/M
3300005764\|Ga0066903_103473682	Not Available	849	Open in IMG/M
3300005764\|Ga0066903_105461910	Not Available	670	Open in IMG/M
3300005764\|Ga0066903_105603743	Not Available	661	Open in IMG/M
3300005764\|Ga0066903_106622817	Not Available	603	Open in IMG/M
3300005764\|Ga0066903_106700814	Not Available	599	Open in IMG/M
3300005843\|Ga0068860_100978968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	863	Open in IMG/M
3300006028\|Ga0070717_10310880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1402	Open in IMG/M
3300006046\|Ga0066652_100960142	Not Available	813	Open in IMG/M
3300006237\|Ga0097621_101011801	Not Available	778	Open in IMG/M
3300006575\|Ga0074053_11751124	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300006604\|Ga0074060_11285097	Not Available	544	Open in IMG/M
3300006755\|Ga0079222_10172732	Not Available	1261	Open in IMG/M
3300006804\|Ga0079221_10037218	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300006854\|Ga0075425_100086130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3558	Open in IMG/M
3300006953\|Ga0074063_13190599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1353	Open in IMG/M
3300009098\|Ga0105245_11330348	Not Available	768	Open in IMG/M
3300009162\|Ga0075423_10301715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1679	Open in IMG/M
3300009162\|Ga0075423_11660652	Not Available	687	Open in IMG/M
3300009792\|Ga0126374_10000832	All Organisms → cellular organisms → Bacteria	8383	Open in IMG/M
3300009792\|Ga0126374_11893816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300010043\|Ga0126380_10029723	Not Available	2747	Open in IMG/M
3300010043\|Ga0126380_10080362	Not Available	1885	Open in IMG/M
3300010043\|Ga0126380_10493825	Not Available	937	Open in IMG/M
3300010046\|Ga0126384_10255305	Not Available	1419	Open in IMG/M
3300010046\|Ga0126384_11600934	Not Available	613	Open in IMG/M
3300010047\|Ga0126382_10284575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1232	Open in IMG/M
3300010048\|Ga0126373_10773833	Not Available	1021	Open in IMG/M
3300010048\|Ga0126373_13330936	Not Available	500	Open in IMG/M
3300010358\|Ga0126370_11717914	Not Available	605	Open in IMG/M
3300010358\|Ga0126370_11924103	Not Available	576	Open in IMG/M
3300010359\|Ga0126376_10119279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2054	Open in IMG/M
3300010361\|Ga0126378_11076697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	905	Open in IMG/M
3300010366\|Ga0126379_11093088	Not Available	903	Open in IMG/M
3300010366\|Ga0126379_11251516	Not Available	848	Open in IMG/M
3300010366\|Ga0126379_13420532	Not Available	531	Open in IMG/M
3300010398\|Ga0126383_10368007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1464	Open in IMG/M
3300010398\|Ga0126383_10618781	Not Available	1156	Open in IMG/M
3300012200\|Ga0137382_10265844	Not Available	1191	Open in IMG/M
3300012208\|Ga0137376_10837690	Not Available	791	Open in IMG/M
3300012960\|Ga0164301_10618778	Not Available	802	Open in IMG/M
3300012960\|Ga0164301_10766508	Not Available	734	Open in IMG/M
3300012971\|Ga0126369_11303502	Not Available	816	Open in IMG/M
3300012984\|Ga0164309_10837299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	744	Open in IMG/M
3300012988\|Ga0164306_11993505	Not Available	505	Open in IMG/M
3300012989\|Ga0164305_10361532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1097	Open in IMG/M
3300015373\|Ga0132257_101887871	Not Available	769	Open in IMG/M
3300016294\|Ga0182041_11249699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	678	Open in IMG/M
3300016445\|Ga0182038_11016071	Not Available	735	Open in IMG/M
3300017939\|Ga0187775_10360747	Not Available	590	Open in IMG/M
3300017944\|Ga0187786_10178906	Not Available	789	Open in IMG/M
3300017947\|Ga0187785_10059474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1451	Open in IMG/M
3300017947\|Ga0187785_10264324	Not Available	777	Open in IMG/M
3300017959\|Ga0187779_10403165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	892	Open in IMG/M
3300017966\|Ga0187776_10359322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	963	Open in IMG/M
3300017974\|Ga0187777_10996335	Not Available	606	Open in IMG/M
3300018032\|Ga0187788_10146963	Not Available	886	Open in IMG/M
3300018058\|Ga0187766_10338775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	982	Open in IMG/M
3300018060\|Ga0187765_10214328	Not Available	1119	Open in IMG/M
3300018064\|Ga0187773_10007413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4513	Open in IMG/M
3300018064\|Ga0187773_10190211	Not Available	1086	Open in IMG/M
3300019890\|Ga0193728_1126338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1153	Open in IMG/M
3300020581\|Ga0210399_10485299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia asymbiotica	1028	Open in IMG/M
3300021478\|Ga0210402_10327148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1420	Open in IMG/M
3300021560\|Ga0126371_10196895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2108	Open in IMG/M
3300021560\|Ga0126371_11024401	Not Available	967	Open in IMG/M
3300021560\|Ga0126371_12081949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300021560\|Ga0126371_12428752	Not Available	634	Open in IMG/M
3300021560\|Ga0126371_12689509	Not Available	603	Open in IMG/M
3300025927\|Ga0207687_10544428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	973	Open in IMG/M
3300027765\|Ga0209073_10238256	Not Available	703	Open in IMG/M
3300027874\|Ga0209465_10109595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1358	Open in IMG/M
3300028884\|Ga0307308_10281176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	797	Open in IMG/M
3300031543\|Ga0318516_10242615	Not Available	1042	Open in IMG/M
3300031719\|Ga0306917_10777799	Not Available	751	Open in IMG/M
3300031720\|Ga0307469_11370637	Not Available	674	Open in IMG/M
3300031765\|Ga0318554_10157095	Not Available	1292	Open in IMG/M
3300031860\|Ga0318495_10279250	Not Available	745	Open in IMG/M
3300031879\|Ga0306919_11213646	Not Available	573	Open in IMG/M
3300031897\|Ga0318520_10509989	Not Available	743	Open in IMG/M
3300031954\|Ga0306926_11131550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	924	Open in IMG/M
3300032010\|Ga0318569_10086483	Not Available	1403	Open in IMG/M
3300032066\|Ga0318514_10789198	Not Available	505	Open in IMG/M
3300032174\|Ga0307470_10872994	Not Available	704	Open in IMG/M
3300032180\|Ga0307471_102647076	Not Available	636	Open in IMG/M
3300032770\|Ga0335085_10016863	All Organisms → cellular organisms → Bacteria	10536	Open in IMG/M
3300032770\|Ga0335085_10417943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1551	Open in IMG/M
3300032770\|Ga0335085_10749618	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1080	Open in IMG/M
3300032770\|Ga0335085_10813892	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1027	Open in IMG/M
3300032770\|Ga0335085_12140549	Not Available	564	Open in IMG/M
3300032783\|Ga0335079_10333853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1647	Open in IMG/M
3300032783\|Ga0335079_10333853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1647	Open in IMG/M
3300032783\|Ga0335079_10755678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1011	Open in IMG/M
3300032783\|Ga0335079_11664697	Not Available	625	Open in IMG/M
3300032954\|Ga0335083_10172424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2013	Open in IMG/M
3300033158\|Ga0335077_10344983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1615	Open in IMG/M
3300033803\|Ga0314862_0113100	Not Available	637	Open in IMG/M
3300033805\|Ga0314864_0119642	Not Available	654	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.96%
Host-Associated	Host-Associated	8.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.96%
Plants	Host-Associated → Plants	8.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	22.32%
Loam	Environmental → Terrestrial → Soil → Loam	15.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	22.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.61%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	10.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.79%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG2_07782800	2189573004	Grass Soil	MSVWISALFIGPLVAAFAVYLCRGPRQDRRLAREQIAEWQILAEIERYENLR
Ga0062595_1007090921	3300004479	Soil	MIAWMAVLFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHENLR*
Ga0062595_1008360981	3300004479	Soil	MIAWIAALFTGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERYENLR*
Ga0066395_100197741	3300004633	Tropical Forest Soil	MIAWIVALFACPLLAGFAVYLCRGPRRDRRLTREQIAEWQVLAEIERHENLADPGAGAM*
Ga0066815_100271102	3300005164	Soil	MIAWILALFSVPLLAGFAVYLCRGPRQRRRLTGEQIAEWRVLAEIEKHEDLR*
Ga0066673_104423042	3300005175	Soil	LMIAWISALSAGPLLAGFAVYLCRGPRQDRRLAREQIAEWQILAEIERLENLR*
Ga0066388_1002523733	3300005332	Tropical Forest Soil	MIAWILALFGVPLLAGFAVYLCRGPRQRRRLTSEQIAEWQVLAAIEKDEDLR*
Ga0066388_1062382411	3300005332	Tropical Forest Soil	MIAWIVALFACPLLAGFAVYLCRGPRRDRRLTREQIAEWQILAEIERHENLADPGAGAM*
Ga0066388_1077029141	3300005332	Tropical Forest Soil	MVAWILALFSVPLLAGFAVYLCRGPRQRRRLTSQQLAEWQVLAAIEQDEDLR*
Ga0070709_104533171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIAWISALSTGPLLAGFAVYLCRGPRRDPRLAREQIAEWQILAEIERLENLH*
Ga0070713_1006358661	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIAWMAVLFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHENLH*
Ga0070678_1008276512	3300005456	Miscanthus Rhizosphere	MIAWMAALFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHENLR*
Ga0066905_1005604581	3300005713	Tropical Forest Soil	MIAWIAVLFTDLLLVGFTIYLCCGPRRDRRLAREQIAEWQILAEIERHENLR*
Ga0066903_1002016444	3300005764	Tropical Forest Soil	MIAWIAVLFTDLLLVGFTIYLCRGPRRDRRLAREQIAEWQILAEIERHENLR*
Ga0066903_1006355921	3300005764	Tropical Forest Soil	MIAWISALLAGPMLLAGFAVYLCRGHRQFRRLTRGQIAELQVLSDIESYENLR*
Ga0066903_1034736822	3300005764	Tropical Forest Soil	MIAWIAMLFTDLLLAGFTVYLWRGPRRNRRLTHGQVAELQVLAEIERHENLR*
Ga0066903_1054619102	3300005764	Tropical Forest Soil	MIAWIVALFACPLLAGFAVYLCRGPRRGLRMTREQIAEWQVLAEIERHENLH*
Ga0066903_1056037431	3300005764	Tropical Forest Soil	MIAWILALFSVPLLAGFAVYLCRGPRQRHRLTGEQIAEWQVLAEIEKHEDLR*
Ga0066903_1066228171	3300005764	Tropical Forest Soil	MIAWISALLAGPMLLAGFAAYLCRGPRQYRRLTRGQIAELQVLSGIENYENLR*
Ga0066903_1067008141	3300005764	Tropical Forest Soil	MIAWISALFTGPLLACFAFYLCRGPRQDRRLAREQIAEWQILAEIERLENLH*
Ga0068860_1009789682	3300005843	Switchgrass Rhizosphere	APMIAWMAVLFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHENLH*
Ga0070717_103108802	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIAWMAALFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHENLH*
Ga0066652_1009601422	3300006046	Soil	MIAWISALSAGPLLAGFAVYLCRGPRQDRRLAREQIAEWQILAEIERLENLR*
Ga0097621_1010118012	3300006237	Miscanthus Rhizosphere	MIAWMAALFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAE
Ga0074053_117511242	3300006575	Soil	VGSRRDRKMIAWILALFSVPLLAGFAVYLCRGPRQRRRLTSEQIAEWRVLAEIEKHEDLR
Ga0074060_112850972	3300006604	Soil	MIAWISALFIGPLVATFAVYLCRGPRQDRRLAREQIAEWQILAEIERYENLR*
Ga0079222_101727322	3300006755	Agricultural Soil	MIAWISALFTGPLLAGFAVYLCRGPRRDPRLARERIAEWQTLAEIERLENLH*
Ga0079221_100372182	3300006804	Agricultural Soil	MIAWISALFTGPLLAGFAVYLCRGPRRDPRLAREQIAEWQTLAEIERLENLH*
Ga0075425_1000861302	3300006854	Populus Rhizosphere	MIAWIAALYTGPLLAGFAVYLCRGPRRDRRPAREQIAEWQILAEIERYENLR*
Ga0074063_131905993	3300006953	Soil	MIAWISALFTGPLLAGFAIYLCRGPRRDLRLTREQIAEWQILTEIERLENLH*
Ga0105245_113303481	3300009098	Miscanthus Rhizosphere	MIAWIAALFTGPLLAGFAVYLCRGPRRDRRLAREQIAEWQILAEIERYENLR*
Ga0075423_103017151	3300009162	Populus Rhizosphere	MIAWIAALYTGPLLAGFAVYLCRGPGRDRRPAREQIAEWQILAEIERYENLR*
Ga0075423_116606521	3300009162	Populus Rhizosphere	MIAWMAVLFVSPSLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHENLR*
Ga0126374_100008321	3300009792	Tropical Forest Soil	MIAWILALFGVPLLAGFAVYLCRGPRQRRRLTSEQIAEWQVLAAIEQDEDLR*
Ga0126374_118938161	3300009792	Tropical Forest Soil	MIAWILALFSVPLLAGFAVYLCRGPRQRRRLTSEQIAEWRVLAEIEKHEDLR*
Ga0126380_100297235	3300010043	Tropical Forest Soil	MIAWIAVLFTDLLLVGFTIYLCRGPRRNRRLAREQIAEWQILAEIERHENLR*
Ga0126380_100803624	3300010043	Tropical Forest Soil	MIAWIVTLFSVPLLAGFAVYLCRGPRRDRRLTSEQIAEWQILAEIEKHENLR*
Ga0126380_104938252	3300010043	Tropical Forest Soil	MIAWILALFGVPLLAGFAVYLCRGPRQRRRLTSEQLAEWQVLAAIEQDEDLR*
Ga0126384_102553052	3300010046	Tropical Forest Soil	MIIWIAVLFTDLLLIGSTVYLCCGPGRDRRLTREQIAEWQVLAEIERHENLR*
Ga0126384_116009341	3300010046	Tropical Forest Soil	MIAWIAMLFTDLLLVGFTVYLCRGPRRDRRLTREQIAEWQVLAEIERHENLR*
Ga0126382_102845752	3300010047	Tropical Forest Soil	MIAWILALFSVPLLAGFAVYLCRGPRQRRRLTSEQIAEWQVLAAIEKDEDLR*
Ga0126373_107738332	3300010048	Tropical Forest Soil	MIAWIAMLFTDLLLAGFAVYLWRGPRRHRLTREQVAELQVLAEIERHENLR*
Ga0126373_133309362	3300010048	Tropical Forest Soil	MIAWISALFTGPLLACFAVYLCRGARQDRRLAREQIAEWQILAEIERLENLR*
Ga0126370_117179142	3300010358	Tropical Forest Soil	MIAWISALFTGPLLACFAFYLCRGPRQDRRLAREQIAEWQILAEIERLENLR*
Ga0126370_119241032	3300010358	Tropical Forest Soil	MIAWMAALCIGPLLASFAFYLCRGPRQDRRLARAQIAEWQILAEIERHENLR*
Ga0126376_101192791	3300010359	Tropical Forest Soil	MVAWILALFSVPLLAGFAVYLCRGPRQRRRLTSEQIAEWQVLAAIEKDEDLR*
Ga0126378_110766971	3300010361	Tropical Forest Soil	MIVWISALFTGPLLACFAVYLCRGPRQDRRLAREQIAEWQILAEIERLENLR*
Ga0126379_110930883	3300010366	Tropical Forest Soil	MIAWISALLAGPVLLAGFAVYLCRGPRQYRRLTRGQIAELQVLS
Ga0126379_112515161	3300010366	Tropical Forest Soil	MIAWISALFTGPLLACFAVYLCRGPRQDRRLAREQIAEWQILAEIERLENLR*
Ga0126379_134205321	3300010366	Tropical Forest Soil	EMIAWILALFGVPLLAGFAVYLCRGPRQRRRLTSEQIAEWQVLAAIEKDEDLR*
Ga0126383_103680072	3300010398	Tropical Forest Soil	MIAWIAMLFTDLLLIGSTVYLCCGPGRDRRLTREQIAEWQVLAEIERHENLR*
Ga0126383_106187811	3300010398	Tropical Forest Soil	MIAWIVTLFPVPLLAGFAVYLCRGPRWGRRLTRGQIAEWQILAEIERHENLR*
Ga0137382_102658442	3300012200	Vadose Zone Soil	MIAWISALSIGPLLAGFAVYLCRGVRQDRRLAREQIAEWQILAEIERLENLR*
Ga0137376_108376902	3300012208	Vadose Zone Soil	MIAWISALSIGPLLAGFAVYLCRGVRQDRRLAREQIAEWQILAEIERLENLS*
Ga0164301_106187781	3300012960	Soil	MIAWMAALFISPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHEKLR*
Ga0164301_107665081	3300012960	Soil	MIAWISALFTGPLLAGFAIYLCRGPCRDLRLTREQLAEWQILTAIERLENLH*
Ga0126369_113035022	3300012971	Tropical Forest Soil	MIAWISALFTGPLLAGFAVYLCRGVRQDRRLAREQIADWQILAEIERIEDLR*
Ga0164309_108372992	3300012984	Soil	MIAWISALFTGPLLAGFAIYLCRGPCRDLRLTREQLAEWQILTEIERHENMH*
Ga0164306_119935051	3300012988	Soil	MIAWMATLFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERHENLR*
Ga0164305_103615322	3300012989	Soil	MIAWISALFTGPLLAGFAIYLCRGPCRDLRLTREQLAEWQILTEIERLENMH*
Ga0132257_1018878711	3300015373	Arabidopsis Rhizosphere	MIAWISALFTGPLLAGFAVYLCRGLRRDPRLAREQIAEWQILAEIERHENLR*
Ga0182041_112496992	3300016294	Soil	PMIVWISALFTGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERLENLR
Ga0182038_110160711	3300016445	Soil	MIVWISALFTGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAE
Ga0187775_103607471	3300017939	Tropical Peatland	MIAWILALFSVPLLAGFAVYLCRGPRQRRRLTSEQIAEWQVLAEIEKHEDLR
Ga0187786_101789061	3300017944	Tropical Peatland	MIAWIVALFSVPLLAGFAVYLCRGPRQRHRLTGEQIAEWQVLAEIEKHEDLR
Ga0187785_100594742	3300017947	Tropical Peatland	MIAWISALFTGPLAAGFAFYLCRGARQDRRVAREQIAEWQILAEIERLENLR
Ga0187785_102643242	3300017947	Tropical Peatland	MIAWILALSTVPLLAGFAVYICRGPRLRCRLTGGQIAEWQILAEIEKHEDLR
Ga0187779_104031652	3300017959	Tropical Peatland	MIAWILALSTVPLLAGFAVYLCRGPRQRGRLTSEQISEWQILAEIEKHEDLC
Ga0187776_103593222	3300017966	Tropical Peatland	MIAWILALSTVPLLAGFAVYLCRGPRLRCRLTGGQIAEWQILAEIEKHEDLR
Ga0187777_109963351	3300017974	Tropical Peatland	MIAWISALSAGPLLAAFAVYLCRGVRQDRRLAREQIAEWQILAEIERLENLL
Ga0187788_101469632	3300018032	Tropical Peatland	MIAWISALSTGPLLAGFAVYLCRGPRRDRRLTREQIAEWQILAEIERLENLR
Ga0187766_103387752	3300018058	Tropical Peatland	MTAWISALSAGPLLAAFAVYLCRGVRQDRRLAREQIAEWQILAEIERLE
Ga0187765_102143282	3300018060	Tropical Peatland	MIAWLAALFACPLLAGFAVYLCRVARQDSRLAREQIAEWQVLAEIERHENLR
Ga0187773_100074136	3300018064	Tropical Peatland	MIAWIVALFAVPLLAGFAVYLCRGPRQRRRLTSGQIAEWQVLAEIEKHEDLR
Ga0187773_101902111	3300018064	Tropical Peatland	MIAWISALSTGPLLAGFAVYLCRGPRRDRRVAREQIAEWQILAEIERLENLR
Ga0193728_11263382	3300019890	Soil	MIAWISALSIGPLLAGFAVYLCRGLRQDRHLAREQIAEWQILSEIERLENLR
Ga0210399_104852992	3300020581	Soil	MIAWISALFTGPLLAGFAIYLCRGPRRDHRLTREQIAEWQILTAIERLENLR
Ga0210402_103271481	3300021478	Soil	MIAWISALFTGPLLAGFAIYLCRGPRRGLRLTREQIAAWQILTEIERLENLH
Ga0126371_101968954	3300021560	Tropical Forest Soil	MIAWIAMLFTDLLLAGFTVYLWRGPRRNRRLTREQVAELQVLAEIERHENLR
Ga0126371_110244012	3300021560	Tropical Forest Soil	MIAWIVALFACPLLAGFAVYLCRGPRRDRRLTREQIAEWQVLAEIERHENLH
Ga0126371_120819491	3300021560	Tropical Forest Soil	MIAWISALFTGPLLAGFAVYLCRGVRQDRRLAREQIADWQILAEIERIEDLR
Ga0126371_124287522	3300021560	Tropical Forest Soil	MIAWISALLAGPVLLAGFAVYLCRGPRQYRRLTRGQIAELQVLSDIES
Ga0126371_126895092	3300021560	Tropical Forest Soil	MIAWISALSAGPLLAGFAVYLCRGPRQDSRLAREQIAEWQILAEIERLENLH
Ga0207687_105444282	3300025927	Miscanthus Rhizosphere	MIAWIAALFTGPLLAGFAVYLCRGPRRDRRLAREQIAEWQILAEIERHENLR
Ga0209073_102382561	3300027765	Agricultural Soil	MIAWISALFTGPLLAGFAVYLCRGPRRDPRLAREQIAEWQTLAEIERLENLH
Ga0209465_101095951	3300027874	Tropical Forest Soil	MIAWIVALFACPLLAGFAVYLCRGPRRDRRLTREQIAEWQVLAEIERHENLADPGAGAM
Ga0307308_102811761	3300028884	Soil	MSVWISALFIGPLVAAFAVYLCRGPRQDRRLAREQIAEWQILAEIERYE
Ga0318516_102426151	3300031543	Soil	MIVWISALFSGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERLENLR
Ga0306917_107777991	3300031719	Soil	MIVWISALFTGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERLENLR
Ga0307469_113706372	3300031720	Hardwood Forest Soil	MIAWISALSTGPMLAGFAVYLCRGPRRDPRPAREQIAEWQILAEIERHENLH
Ga0318554_101570952	3300031765	Soil	MIAWISALFTGPLLAGFAVCLCRGPRQERHLAREQIAEWQVLAEIERLENLH
Ga0318495_102792501	3300031860	Soil	MIVWISALFSGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERRENLRRY
Ga0306919_112136461	3300031879	Soil	MIVWISALFTGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERLENL
Ga0318520_105099891	3300031897	Soil	MIVWISALFTGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERLENLRRYRHQRNV
Ga0306926_111315502	3300031954	Soil	MIVWISALFSGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILAEIERLENLPDTGTSAM
Ga0318569_100864831	3300032010	Soil	MIVWISALFSGPLLAGFAVYLCRGPGRDRRLAREQIAEWQILA
Ga0318514_107891982	3300032066	Soil	MIAWISALFLGPLVAAFAVYLCRGPREDRRLAREQVAEWQILAEIERHENLR
Ga0307470_108729941	3300032174	Hardwood Forest Soil	MIAWMAALFVSPLLAGFAFYLCRGPREDRRLAREQIAEWQILAEIERYENLR
Ga0307471_1026470762	3300032180	Hardwood Forest Soil	MIAWMAALFVSPLLAGFALYLCRGPREDRRLAREQIAEWQILAEIERHENLR
Ga0335085_100168638	3300032770	Soil	MIAWIVALSAVPLLAGFAVYLCRGPRQRRRLTSGQIAEWQVLAEIEKHEDLR
Ga0335085_104179432	3300032770	Soil	MIAWILALSTVPLLTGFAVYLCRGPRQRGRLTSEQIAEWQILAEIEKHEDLC
Ga0335085_107496182	3300032770	Soil	MIAWILALFGVPLLAGFAVYLCRGPRQRRRLTSEQMAEWQVLAAIEKDEDLR
Ga0335085_108138921	3300032770	Soil	MIAWILTLFSVPLLAGFAVYLCRGPRQRRRLTSGQIAEWQVLAEIEKHEDLR
Ga0335085_121405491	3300032770	Soil	MIAWISALSAGPLLAAFAVYLCRGVRQDRRLAREQIAEWQILAEIERLENLR
Ga0335079_103338531	3300032783	Soil	MITWILVLLAGPALLAGFAVYLCRGPRRRHRLTSGQIAEWQILADIERREDLLLTSAGAA
Ga0335079_103338532	3300032783	Soil	MILWMSALFTSPLLAGFAFYLCRGPRRDRLTREQIAEWQALAEIERHENLR
Ga0335079_107556781	3300032783	Soil	MIAWMAALCTGPLLAGFAVYLCRGPRRDRRLAREQIAEWQILAEIERHENLR
Ga0335079_116646971	3300032783	Soil	MIAWLAALFACPLLAGFAIYLCHGPRRERRLTRGQIAEWQVLAEIERHENLR
Ga0335083_101724242	3300032954	Soil	MIAWILALFSVPLLAGFAVYLCRGPRQRRRLTSEQMAEWQVLAAIEKDEDLR
Ga0335077_103449835	3300033158	Soil	MIAWILALLAVPLLAGFAVYLCRGPRQRCRLTGGQIAEWQILAEIEKHED
Ga0314862_0113100_447_605	3300033803	Peatland	MIAWILALSTVPLLAGFAVYLCRGPRQRGRLTSERIAEWQILAEIEKHEDLC
Ga0314864_0119642_247_402	3300033805	Peatland	MIAWILALFGVPLLAGFAVYLCRGPRQRRLTSEQIAEWQVLAEIEKHEDLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084375

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences