NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F084357

Metagenome Family F084357

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084357
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 41 residues
Representative Sequence MKNYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK
Number of Associated Samples 68
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Viruses
% of genes with valid RBS motifs 77.68 %
% of genes near scaffold ends (potentially truncated) 14.29 %
% of genes from short scaffolds (< 2000 bps) 68.75 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Duplodnaviria (50.893 % of family members)
NCBI Taxonomy ID 2731341
Taxonomy All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(31.250 % of family members)
Environment Ontology (ENVO) Unclassified
(86.607 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.750 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.
1BBAY92_100360203
2BBAY92_100982334
3BBAY93_101873632
4BBAY93_101876252
5ACM55_10224852
6ACM6_10092934
7ACM6_10264264
8GOS2237_10457232
9GOS2240_10032525
10GOS2233_10598291
11JGI25127J35165_100132714
12JGI25127J35165_10159625
13JGI25127J35165_10219962
14JGI25127J35165_11271051
15JGI25132J35274_10805851
16JGI25128J35275_10371953
17Ga0068511_10510863
18Ga0068511_10636722
19Ga0066840_100871122
20Ga0078893_135868984
21Ga0075462_101762873
22Ga0068468_10241775
23Ga0098038_11803903
24Ga0098037_11256364
25Ga0098042_10026557
26Ga0098042_11392883
27Ga0070746_100765934
28Ga0070746_100854884
29Ga0101666_10106994
30Ga0101668_10086292
31Ga0115012_120112072
32Ga0160422_100236565
33Ga0160422_100509474
34Ga0160422_101167593
35Ga0160422_103257313
36Ga0160422_108219042
37Ga0160422_108782662
38Ga0160423_100590534
39Ga0160423_100782023
40Ga0160423_100842353
41Ga0160423_102215963
42Ga0160423_103285623
43Ga0160423_103689233
44Ga0160423_104681972
45Ga0160423_105721713
46Ga0160423_106003592
47Ga0163180_1000178113
48Ga0163179_105404804
49Ga0163111_107958971
50Ga0181403_10847501
51Ga0181383_10675314
52Ga0181416_10912742
53Ga0181426_10281304
54Ga0187222_100076019
55Ga0181427_10502984
56Ga0181382_11573121
57Ga0181409_11552303
58Ga0181414_10931162
59Ga0211701_10001286
60Ga0211584_100043110
61Ga0211700_10122031
62Ga0211703_101564861
63Ga0211498_100098148
64Ga0211618_100283895
65Ga0211532_100436203
66Ga0211496_101208424
67Ga0211668_1000916614
68Ga0211699_102359572
69Ga0211699_103488151
70Ga0211587_104669423
71Ga0211528_100232441
72Ga0211580_100059503
73Ga0211580_101704533
74Ga0211580_102834041
75Ga0211565_100098206
76Ga0211708_100025409
77Ga0211708_100853265
78Ga0211708_101047463
79Ga0211708_104415762
80Ga0211576_100785166
81Ga0211638_103007882
82Ga0211535_103800593
83Ga0211543_1000220825
84Ga0211614_1000288518
85Ga0224902_1001428
86Ga0224906_10589351
87Ga0208157_10545234
88Ga0208159_100264015
89Ga0208159_10139943
90Ga0209348_100548310
91Ga0209348_10056316
92Ga0209348_10061638
93Ga0209348_10260193
94Ga0209348_10509914
95Ga0209348_10892994
96Ga0209232_10074089
97Ga0209232_10466114
98Ga0209232_12074402
99Ga0209645_100737310
100Ga0209645_10648992
101Ga0185543_11161701
102Ga0183748_100099813
103Ga0183748_10142926
104Ga0183748_10739854
105Ga0183826_10036393
106Ga0183826_10046347
107Ga0183826_10242952
108Ga0183826_10318082
109Ga0183826_10549672
110Ga0310343_1000009334
111Ga0310343_101688336
112Ga0315315_115220493
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 22.86%    Coil/Unstructured: 77.14%
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Variant

510152025303540MKNYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
77.7%22.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Seawater
Marine Plankton
Marine Water
Marine
Surface Seawater
Seawater
Aqueous
Marine Surface Water
Marine
Seawater
Marine
Seawater
Volcanic Co2 Seep Seawater
Macroalgal Surface
24.1%8.9%5.4%31.3%9.8%3.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
BBAY92_1003602033300000947Macroalgal SurfaceMKNYLSRNKDEYLIKDPNLNIHFKIINGVRYWLTPPPSSYKK*
BBAY92_1009823343300000947Macroalgal SurfaceMKNYLSNSKQNEYLKLDPNLKIHFKIIDGVRYWLTPPPTGYQK*
BBAY93_1018736323300000973Macroalgal SurfaceMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPSDYKK*
BBAY93_1018762523300000973Macroalgal SurfaceMTCLSKDKDEYLVKDPNLNVHFKIINGVRYWLTPPPSSYKK*
ACM55_102248523300001829Marine PlanktonMKNYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
ACM6_100929343300001832Marine PlanktonMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPTGYQK*
ACM6_102642643300001832Marine PlanktonMKNYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPLDYKK*
GOS2237_104572323300001955MarineMKSYLSKTKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
GOS2240_100325253300001961MarineMKNYLSNSKQNEYLKLDPNLKIHFKIINGVRYWLTPPPTDYQK*
GOS2233_105982913300001969MarineMKSYLSKSKDEYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK*
JGI25127J35165_1001327143300002482MarineMKNYLSNSKQNEYLKLDPNXXIHFKIIDGVRYWLTPPPTGYLK*
JGI25127J35165_101596253300002482MarineMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPLDYKK*
JGI25127J35165_102199623300002482MarineMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPSNYKK*
JGI25127J35165_112710513300002482MarineMKSYLSKPKNEYLVKDPNLNVHFKIINGVRYWLTPLPSGYQK*
JGI25132J35274_108058513300002483MarineMKSYLSKSKPKKYLVKDPLLNIHFKIEDGVRYWLTPPPSDYKK*
JGI25128J35275_103719533300002488MarineMKNYLSRSKDGYLIKDPNLNIHFKIINGVRYWLTPPPSSYKK*
Ga0068511_105108633300005057Marine WaterMKNYLSNSKQNEYLKLDPNLKIHFKIINGVRYWLTPPPLDYQK*
Ga0068511_106367223300005057Marine WaterMKSYLSKPKNEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
Ga0066840_1008711223300005608MarineMKNYLSNSKQNEYLKLDPNLKIHFKIINGVRYWLTPPPSDYKK*
Ga0078893_1358689843300005837Marine Surface WaterMNYLSKNKQKEYLILDPNLNIHFKIINGVRFWLAPPPTGYQK*
Ga0075462_1017628733300006027AqueousMKSYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
Ga0068468_102417753300006305MarineQMNYLSKNKQKEYLILDPNLNIHFKIINGVRFWLAPPPTGYQK*
Ga0098038_118039033300006735MarineMKNYLSRSKDEYLIKDPNLNIHFKIINGVRYWLTPPPSSYKK*
Ga0098037_112563643300006737MarineMNYLSRHTRSNKYLVKDPNLNIHFQIINGVRFWLTPP
Ga0098042_100265573300006749MarineMKNCPSKCKDEYLVKDPNLNIHFKIINGVRYWLTPPPASYGK*
Ga0098042_113928833300006749MarineMKNYLSNSKQNEYLKLDPNLNIHFKIINGVRYWLTPPPPDYEK*
Ga0070746_1007659343300006919AqueousMKNFPSEPKNEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
Ga0070746_1008548843300006919AqueousMKNYLSNSKQNEYLKLDPNLKIHFKIINGVRYWLTPPPTGYQK*
Ga0101666_101069943300007113Volcanic Co2 Seep SeawaterMKSYLSKRKDEYLVKDPNLNIHFKIINGVRYWLTPPPLDYQK*
Ga0101668_100862923300007114Volcanic Co2 Seep SeawaterMKSYLSKRKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
Ga0115012_1201120723300009790MarineMKNFPSKCKDEYLVKDPNLNIHFKIINGVRYWLTPPPAGYEK*
Ga0160422_1002365653300012919SeawaterMKTYLSEPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
Ga0160422_1005094743300012919SeawaterMNYLSKFKIEYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK*
Ga0160422_1011675933300012919SeawaterMNYLSKSKDEYLVKDPNLNIYFKIINGVRYWLTPPPSDYQK*
Ga0160422_1032573133300012919SeawaterMKSYLSKPKDEYIVKDPNLNIHFKIINGVRYWLTPPPLDYKK*
Ga0160422_1082190423300012919SeawaterMKNYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYQK*
Ga0160422_1087826623300012919SeawaterMNYLSKTKHEYLVKDPNLNIHFKIINGVRYWLTPP
Ga0160423_1005905343300012920Surface SeawaterMKNYLSNTKQNQYLKLDPNLNIHFKIINGVRYWLTPPPSTYEK*
Ga0160423_1007820233300012920Surface SeawaterMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPSGYQK*
Ga0160423_1008423533300012920Surface SeawaterMKSYLSKSKNQYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK*
Ga0160423_1022159633300012920Surface SeawaterMKNFPSKTKDEYIVKDPNLNIHFKIINGVRYWLTPPPSDYQR*
Ga0160423_1032856233300012920Surface SeawaterMKNFPSKTKDEYLVKDPNLNIHFKIINGVRYWLTPPPLDYKK*
Ga0160423_1036892333300012920Surface SeawaterMKNFPSKTKDEYIVKDPNLNIHFKIINGVRYWLTPPPSDYKK*
Ga0160423_1046819723300012920Surface SeawaterMKSYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPLDYKK*
Ga0160423_1057217133300012920Surface SeawaterMNYLSKSKDEYLVKDPNLNIHFKIINGVRYWLAPPPSTYEK*
Ga0160423_1060035923300012920Surface SeawaterMKSYPSNHKQNEYLILDPNLNIHFKIVNGVRYWLAPPPSGYQK*
Ga0163180_10001781133300012952SeawaterMNYLSKRKDEYLIRDPNLNIHFKIKNGVRYWLTPPPSGYQK*
Ga0163179_1054048043300012953SeawaterMKNYLSKSKNEYLIKDPNLNIHFKIINGVRYWLTPPPSSYKE*
Ga0163111_1079589713300012954Surface SeawaterPSKTKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYQR*
Ga0181403_108475013300017710SeawaterMTCLSKNKDEYLVKDPNLNVHFKIINGVRYWLTPPPS
Ga0181383_106753143300017720SeawaterMTCLSKDKDEYLVKDPNLNIHFKIINGVRYWLTPPPSSYKK
Ga0181416_109127423300017731SeawaterMTCLSKDKDEYLVKDPNLNVHFKIINGVRYWLTPPPPGYKK
Ga0181426_102813043300017733SeawaterMTCLSKNKDEYLVKDPNLNVHFKIINGVRYWLTPPPSSYKK
Ga0187222_1000760193300017734SeawaterMTCLSKDKDEYLVKDPNLNVHFKIINGVRYWLTPPPSSYKQ
Ga0181427_105029843300017745SeawaterMTCLSKDKDEYLVKDPNLNVHFKIINGVRYWLTPPPSDYK
Ga0181382_115731213300017756SeawaterDKDEYLVKDPNLNVHFKIINGVRYWLTPPPSSYKQ
Ga0181409_115523033300017758SeawaterMKNYLSRSKDEYLIKDPNLNIHFKIINGVRYWLTTP
Ga0181414_109311623300017759SeawaterMTGLSKDKDEYLVKDPNLNVHFKIINGVRYWLTPPPPGYKK
Ga0211701_100012863300020242MarineMNYLSKNKQKEYLILDPNLNIHFKIINGVRFWLAPPPTGYQK
Ga0211584_1000431103300020248MarineMNQMKFLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK
Ga0211700_101220313300020251MarineMKSYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK
Ga0211703_1015648613300020367MarineMKFLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPL
Ga0211498_1000981483300020380MarineMKSYLFKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK
Ga0211618_1002838953300020393MarineMNYPSKRKDEYLIRDPNLNIHFKIINGVRYWLTPPPSGYQK
Ga0211532_1004362033300020403MarineMNYLSKSKQKEYLILDPNLNIHFKIINGVRFWLTPPPTGYQK
Ga0211496_1012084243300020405MarineYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPSGYQK
Ga0211668_10009166143300020406MarineMNYLSKTKDEYLIRDPNLNIHFKIKNGVRYWLTPPPSSYRK
Ga0211699_1023595723300020410MarineMKSYLFKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPSGYQK
Ga0211699_1034881513300020410MarineMKSYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPLNYKK
Ga0211587_1046694233300020411MarineMHQQQMNYPSKRKDEYLIRDPNLNIHFKIINGVRYWLTPPPSGYQK
Ga0211528_1002324413300020417MarineMKIYPSKSKQNEYLKLDPNLKIHFKIINGVRYWLTPPP
Ga0211580_1000595033300020420MarineMNYLSKSKQKEYLILDPNLNIHFKIINGVRFWLAPPPTGYQK
Ga0211580_1017045333300020420MarineMKSYLSKPKAEYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK
Ga0211580_1028340413300020420MarineMKSCLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSNYKK
Ga0211565_1000982063300020433MarineMKNYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYQK
Ga0211708_1000254093300020436MarineMKNFPSKCKDEYLVKDPNLNIHFKIVNGVRYWLTPPPSDYKK
Ga0211708_1008532653300020436MarineMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPLPSGYQK
Ga0211708_1010474633300020436MarineMKNYLSKSKDEYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK
Ga0211708_1044157623300020436MarineMKFLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSNYQK
Ga0211576_1007851663300020438MarineMTCLSKNKDEYLVKDPNLNVHFKIINGVRYWLTPPPSGYKQ
Ga0211638_1030078823300020448MarineMKFLSKHKDEYLVKDPNLNIHFRIINGVRYWLTPPPLNYKK
Ga0211535_1038005933300020461MarineMNFPSKRKDEYLIRDPNLNIHFKIINGVRYWLTPPPSGY
Ga0211543_10002208253300020470MarineMKISRSRLKDEYLVKDPNLNIHFKIINGVRYWLTPPPLGYKK
Ga0211614_10002885183300020471MarineMNYLFKSKQKEYLILDPNLNIHFKIINGVRFWLAPPPTGYQK
Ga0224902_10014283300022066SeawaterMTCLSKDKDEYLVKDPNLNVHFKIINGVRYWLTPPPSSYKK
Ga0224906_105893513300022074SeawaterMKNYLSRSKDEYFIKDPNLNIHFKIINGVRYWLTP
Ga0208157_105452343300025086MarineMKNYLSRSKDEYLIKDPNLNIHFKIINGVRYWLTPPPSSYK
Ga0208159_1002640153300025101MarineMKNCPSKCKDEYLVKDPNLNIHFKIINGVRYWLTPPPASYGK
Ga0208159_101399433300025101MarineMKNYLSNSKQNEYLKLDPNLNIHFKIINGVRYWLTPPPPDYEK
Ga0209348_1005483103300025127MarineMKSYLSKTKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK
Ga0209348_100563163300025127MarineMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPSNYKK
Ga0209348_100616383300025127MarineMKSYLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPLDYKK
Ga0209348_102601933300025127MarineMKNYLSNSKQNEYLKLDPNLKIHFKIIDGVRYWLTPPPTGYLK
Ga0209348_105099143300025127MarineMKSYLSKSKDEYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK
Ga0209348_108929943300025127MarineMKSYLSKPKNEYLVKDPNLNVHFKIINGVRYWLTPLPSGYQK
Ga0209232_100740893300025132MarineMKSCLSKPKDGYLVKDPNLNIHFKIINGVRYWLTPPPLDYKK
Ga0209232_104661143300025132MarineMKSYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPLDYKK
Ga0209232_120744023300025132MarineMTCLSKDKDEYLVKDPNLNVHFKIINGVRYWLTPPPSGYKQ
Ga0209645_1007373103300025151MarineMKSFPSKCKDEYLVKDPNLNIHFKIINGVRYWLTPPPLDYKK
Ga0209645_106489923300025151MarineMKSYLSKSKPKKYLVKDPLLNIHFKIEDGVRYWLTPPPSDYKK
Ga0185543_111617013300029318MarineMKSYLSKRKDEYLVKDPNLNIHFKIINGVRYWLTPPP
Ga0183748_1000998133300029319MarineMKSYRSKSKSKYLVKDPNLNIHFEIINGVRYWLTPPPSGYQK
Ga0183748_101429263300029319MarineMKSYLFKAKDGYLVKDPNLNVHFKIINGVRYWLTPLPSGYQK
Ga0183748_107398543300029319MarineKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK
Ga0183826_100363933300029792MarineMKFLSKPKDEYLVKDPNLNVHFKIINGVRYWLTPPPLDYKK
Ga0183826_100463473300029792MarineMKSYLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSEYKK
Ga0183826_102429523300029792MarineMKFLSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPSDYKK
Ga0183826_103180823300029792MarineMKSYLSKSKDEYLVKDPNLNVHFKIINGVRYWLTPPPSGYQK
Ga0183826_105496723300029792MarineMNYLSKRKDEYLVKDPNLNIHFKIINGVRYWLTPPPSGYQK
Ga0310343_10000093343300031785SeawaterMKNYLSKSKDEYLVKDPNLNIHFKIINGVRYWLTPPPSNYQK
Ga0310343_1016883363300031785SeawaterMKFPSKPKDEYLVKDPNLNIHFKIINGVRYWLTPPPLNYKK
Ga0315315_1152204933300032073SeawaterMYQQQMNYLFKRKDEYLIRDPNLNIHFKIKNGVRYWLTPPPSGYQK


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