Metagenome / Metatranscriptome Family F084323

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084323
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	59 residues
Representative Sequence	QLQFTVEDKGVFTTAWSATKTYRRVFRDWPENVCAENPHKYGTEKDAAVPTADKPDF
Number of Associated Samples	92
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.01 %
% of genes near scaffold ends (potentially truncated)	86.61 %
% of genes from short scaffolds (< 2000 bps)	80.36 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.357 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.536 % of family members)
Environment Ontology (ENVO)	Unclassified (25.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.143 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF05433	Rick_17kDa_Anti	7.14
PF03401	TctC	3.57
PF13531	SBP_bac_11	3.57
PF17170	DUF5128	1.79
PF04444	Dioxygenase_N	1.79
PF00753	Lactamase_B	1.79
PF10518	TAT_signal	0.89
PF13505	OMP_b-brl	0.89
PF08241	Methyltransf_11	0.89
PF03972	MmgE_PrpD	0.89
PF01553	Acyltransferase	0.89
PF08548	Peptidase_M10_C	0.89
PF13936	HTH_38	0.89
PF13391	HNH_2	0.89
PF13414	TPR_11	0.89
PF00005	ABC_tran	0.89
PF08502	LeuA_dimer	0.89
PF01738	DLH	0.89
PF00383	dCMP_cyt_deam_1	0.89
PF12390	Se-cys_synth_N	0.89
PF07859	Abhydrolase_3	0.89
PF06742	DUF1214	0.89
PF05598	DUF772	0.89
PF04299	FMN_bind_2	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.57
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.79
COG0119	Isopropylmalate/homocitrate/citramalate synthases	Amino acid transport and metabolism [E]	0.89
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.89
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.89
COG2931	Ca2+-binding protein, RTX toxin-related	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.89
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.89
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.18 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	8.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.71 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	8.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.18 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	8.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.14 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.18 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	8.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.46 %
Desulfarculales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales	0.89 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.18 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	8.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.57 %
Variibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter	0.89 %
Desulfarculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae	0.89 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.89 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.18 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	8.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.79 %
Dethiosulfatarculus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Dethiosulfatarculus	0.89 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.89 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.89 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.18 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	8.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.79 %
Burkholderia sp. Tr-20390	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Tr-20390	0.89 %
Dethiosulfatarculus sandiegensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Dethiosulfatarculus → Dethiosulfatarculus sandiegensis	0.89 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.89 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW02IBH2B	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	522	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101752757	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300002568\|C688J35102_117974936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300004091\|Ga0062387_101381439	Not Available	560	Open in IMG/M
3300004091\|Ga0062387_101729375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	509	Open in IMG/M
3300005538\|Ga0070731_11070452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300005607\|Ga0070740_10244589	Not Available	734	Open in IMG/M
3300005764\|Ga0066903_100801793	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300005764\|Ga0066903_102203277	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300006050\|Ga0075028_100004436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5356	Open in IMG/M
3300006050\|Ga0075028_100901631	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	545	Open in IMG/M
3300006057\|Ga0075026_100707119	Not Available	603	Open in IMG/M
3300006354\|Ga0075021_10239781	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300006354\|Ga0075021_10351058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	920	Open in IMG/M
3300006804\|Ga0079221_11359715	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	562	Open in IMG/M
3300009143\|Ga0099792_10651290	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300009683\|Ga0116224_10495845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300010049\|Ga0123356_10320973	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1662	Open in IMG/M
3300010360\|Ga0126372_13032663	Not Available	521	Open in IMG/M
3300010362\|Ga0126377_12431021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300010362\|Ga0126377_13256931	Not Available	525	Open in IMG/M
3300010376\|Ga0126381_103395251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300010379\|Ga0136449_100153238	All Organisms → cellular organisms → Bacteria → Proteobacteria	4514	Open in IMG/M
3300010398\|Ga0126383_10375926	Not Available	1450	Open in IMG/M
3300010398\|Ga0126383_11288802	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300010880\|Ga0126350_10421419	Not Available	568	Open in IMG/M
3300012189\|Ga0137388_11749897	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300012357\|Ga0137384_11083450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	643	Open in IMG/M
3300012362\|Ga0137361_10122036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2296	Open in IMG/M
3300012582\|Ga0137358_10347898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1004	Open in IMG/M
3300012917\|Ga0137395_10417111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	962	Open in IMG/M
3300012922\|Ga0137394_11381054	Not Available	565	Open in IMG/M
3300012923\|Ga0137359_10622062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	946	Open in IMG/M
3300014162\|Ga0181538_10605477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300014169\|Ga0181531_10657267	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300016270\|Ga0182036_10200872	All Organisms → cellular organisms → Bacteria → Proteobacteria	1461	Open in IMG/M
3300016371\|Ga0182034_11844469	Not Available	533	Open in IMG/M
3300016445\|Ga0182038_11773666	Not Available	557	Open in IMG/M
3300017966\|Ga0187776_10087502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1835	Open in IMG/M
3300018007\|Ga0187805_10519207	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	559	Open in IMG/M
3300018058\|Ga0187766_10537149	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	791	Open in IMG/M
3300018060\|Ga0187765_11313643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300018062\|Ga0187784_11057617	Not Available	644	Open in IMG/M
3300018089\|Ga0187774_11372214	Not Available	516	Open in IMG/M
3300018429\|Ga0190272_11130724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	762	Open in IMG/M
3300020199\|Ga0179592_10525989	Not Available	504	Open in IMG/M
3300020580\|Ga0210403_10395469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1129	Open in IMG/M
3300020580\|Ga0210403_11438034	Not Available	521	Open in IMG/M
3300020581\|Ga0210399_11035045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300020582\|Ga0210395_11404225	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300021178\|Ga0210408_10891394	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	693	Open in IMG/M
3300021432\|Ga0210384_10395336	Not Available	1245	Open in IMG/M
3300021478\|Ga0210402_10670946	Not Available	959	Open in IMG/M
3300021478\|Ga0210402_10769897	Not Available	887	Open in IMG/M
3300021478\|Ga0210402_11089429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300021478\|Ga0210402_11207304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Tr-20390	684	Open in IMG/M
3300021861\|Ga0213853_10499082	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300022533\|Ga0242662_10137131	Not Available	730	Open in IMG/M
3300026320\|Ga0209131_1021432	All Organisms → cellular organisms → Bacteria	3872	Open in IMG/M
3300026320\|Ga0209131_1188337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300026341\|Ga0257151_1000591	All Organisms → cellular organisms → Bacteria	2994	Open in IMG/M
3300026469\|Ga0257169_1038282	Not Available	733	Open in IMG/M
3300026496\|Ga0257157_1008230	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1633	Open in IMG/M
3300026498\|Ga0257156_1078816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300026551\|Ga0209648_10021891	All Organisms → cellular organisms → Bacteria	5587	Open in IMG/M
3300026551\|Ga0209648_10573939	Not Available	625	Open in IMG/M
3300027480\|Ga0208993_1099505	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	532	Open in IMG/M
3300027635\|Ga0209625_1031447	Not Available	1184	Open in IMG/M
3300027641\|Ga0208827_1215913	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	504	Open in IMG/M
3300027862\|Ga0209701_10531737	Not Available	634	Open in IMG/M
3300027894\|Ga0209068_10053619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2052	Open in IMG/M
3300027894\|Ga0209068_10237577	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300027903\|Ga0209488_10113646	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Dethiosulfatarculus → Dethiosulfatarculus sandiegensis	2035	Open in IMG/M
3300027903\|Ga0209488_10528244	Not Available	862	Open in IMG/M
3300027903\|Ga0209488_11046844	Not Available	561	Open in IMG/M
3300027908\|Ga0209006_11170780	Not Available	602	Open in IMG/M
3300027915\|Ga0209069_10114032	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300027986\|Ga0209168_10428285	Not Available	642	Open in IMG/M
3300031234\|Ga0302325_10952462	All Organisms → cellular organisms → Bacteria → Proteobacteria	1182	Open in IMG/M
3300031549\|Ga0318571_10233484	Not Available	670	Open in IMG/M
3300031564\|Ga0318573_10477775	Not Available	671	Open in IMG/M
3300031719\|Ga0306917_10625953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	846	Open in IMG/M
3300031765\|Ga0318554_10828166	Not Available	517	Open in IMG/M
3300031781\|Ga0318547_10518683	Not Available	737	Open in IMG/M
3300031823\|Ga0307478_11223218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300031846\|Ga0318512_10565935	Not Available	578	Open in IMG/M
3300031868\|Ga0316038_105733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	759	Open in IMG/M
3300031870\|Ga0316029_110580	Not Available	518	Open in IMG/M
3300031912\|Ga0306921_11916766	Not Available	634	Open in IMG/M
3300031941\|Ga0310912_11386341	Not Available	531	Open in IMG/M
3300031954\|Ga0306926_10497767	All Organisms → cellular organisms → Bacteria → Proteobacteria	1498	Open in IMG/M
3300032035\|Ga0310911_10451367	Not Available	745	Open in IMG/M
3300032180\|Ga0307471_101380628	Not Available	865	Open in IMG/M
3300032180\|Ga0307471_103733746	Not Available	539	Open in IMG/M
3300032180\|Ga0307471_104345459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300032261\|Ga0306920_100056277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5727	Open in IMG/M
3300032261\|Ga0306920_104110087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300032515\|Ga0348332_14118471	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300032892\|Ga0335081_11303848	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	819	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.54%
Host-Associated	Host-Associated	4.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.14%
Aquatic	Environmental → Aquatic	13.39%
Plants	Host-Associated → Plants	3.57%
Arthropoda	Host-Associated → Arthropoda	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.46%
Sediment	Environmental → Aquatic → Sediment	7.14%
Freshwater	Environmental → Aquatic → Freshwater	6.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.79%
Peat	Environmental → Terrestrial → Peat	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.14%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.25%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.14%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.68%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.68%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031868	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031870	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_05139910	2170459006	Grass Soil	GGQGIGEGWAPDPAYKGQGLQLQFTVEDKDVFTTPWSATKTYRRVFRDWPEQVCAENPHKYSTEKDAAIPTADKPDF
INPhiseqgaiiFebDRAFT_1017527571	3300000364	Soil	LQFTVEDKGVFTTTWSATKTYRRVFRNWPENVCAENRLKYGTEKDAAVPTADKPDF*
C688J35102_1179749361	3300002568	Soil	TKTYRRIFRDWPENVCAENTRKYGTEKDAAVPTADKPDF*
Ga0062387_1013814391	3300004091	Bog Forest Soil	FTVEDEGVFTTAWSAAKTYRRVFREWPEGVCSENPHKYNTEKDAAVPTADKPDF*
Ga0062387_1017293751	3300004091	Bog Forest Soil	DSSLRTWEGDQWKIGGGIGETWAPDPNYKGKALQLQFTVEDKGVFTTVWSATKTYRRVFRGWPENVCAENPHKYGTEKDAAVPTADKPDF*
Ga0063356_1050422011	3300004463	Arabidopsis Thaliana Rhizosphere	VEDDGVFTAPWTATMTYRPQTVDWVESICSENTNKYGTEKDAEVPTAGKPDF*
Ga0070731_110704521	3300005538	Surface Soil	DPSYKGKALELQFTVEDEGVFTTVWSATKTYRRVFRSWPENVCAENPHKYGTEKDAAVPTADKPDF*
Ga0070740_102445891	3300005607	Surface Soil	QFTVEDEGVFTTAWSAAKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAVRPDF*
Ga0066903_1008017931	3300005764	Tropical Forest Soil	NSLVRAKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAVKPDF*
Ga0066903_1022032772	3300005764	Tropical Forest Soil	DEGVFTTAWSATKTYRRVFRDWPERVCAENPYRYGTEKDAAVPTAVKPDF*
Ga0075028_1000044366	3300006050	Watersheds	PTNKGKGLQLQFTVEDKEVFTTPWSATKTYRRVFRDWPEQVCAENPHKYGTEKDAAVPTADKPDF*
Ga0075028_1009016312	3300006050	Watersheds	ENGRGGGIGETWAPDPNYKGKALQLQFTVEDKGVFTTAWSATKTYRRVFRGWPENVCAENPHKYGTEKDAAVPTADKLDF*
Ga0075026_1007071191	3300006057	Watersheds	TYRRVFRDWPEQVCAENPHKYGTEKDAAVPTADKPDF*
Ga0075021_102397811	3300006354	Watersheds	YWRVIRDWPENVCAENPHKYNTEKDAAVPTADKPDF*
Ga0075021_103510581	3300006354	Watersheds	GKALQLQFTVEDDGAFTTAWSATKTYRRAFRDWPERACAENPYKYGTEKDAAVPTAVKPDF*
Ga0079222_123013681	3300006755	Agricultural Soil	LQLEFTVDDEGVFTAPWTATMTYRPQIVEWQESICSENPNKYGTEKDAEIPAAAKPDF*
Ga0079221_113597151	3300006804	Agricultural Soil	FTTAWSAIKTYRRAFRDWPEQVCAENPHKYGTERDAMVPTAEQPDF*
Ga0075430_1004914062	3300006846	Populus Rhizosphere	HLQLEFTVEDAGVFTTPWTATMTYRPQTVDWVESICAENTNKYGTEKDAEVPTAGKPDF*
Ga0099792_106512902	3300009143	Vadose Zone Soil	PDPNYKGKALQLQFTVQDDGVFTTAWSATKTYRRIFRDWPERVCAENPNGYGTEKDAAVPTAVKPDF*
Ga0116224_104958451	3300009683	Peatlands Soil	YRRVFRGWPENVCAENPHKYGTEKDAAVPTADKPDF*
Ga0123356_103209731	3300010049	Termite Gut	AVNEGWAPDPNDKGKALQLQFTVEDEGAFTTAWSAAKTYRRASRDWPERVCAENPYRYGTEKDAAVPTAVKPDF*
Ga0126372_130326632	3300010360	Tropical Forest Soil	TIEDEGVFTTAWSATKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAVKPDF*
Ga0126377_124310212	3300010362	Tropical Forest Soil	EGWAPDPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFRDWPERACAENPYRYGTEKDAAVPSAVKPDF*
Ga0126377_132569311	3300010362	Tropical Forest Soil	LQLQFTVEDEGVFTTAWSASKTYRRVFLDWPERVCAENPHKYGTEKDAAVPTAVKPDF*
Ga0126381_1033952511	3300010376	Tropical Forest Soil	KGKGLQLQFTVEDKEVFTAPWSATKTYRRVFREWPEQARAENPHKYSTEKDAAVPTAEKPDF*
Ga0136449_1001532385	3300010379	Peatlands Soil	LQLQFTVEDEGVFTTAWSATKTYRRVFRDWPERVCAENPYRYGTEKDAAVPTAVKPDF*
Ga0126383_103759262	3300010398	Tropical Forest Soil	GWAPDPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFLDWPERVCAENPHKYGTEKDAAVPTAVKPDF*
Ga0126383_112888022	3300010398	Tropical Forest Soil	FTTAWSATKTYRRVFRGWPENVCAENPHKYGTEKDAALPTADKPDF*
Ga0126350_104214192	3300010880	Boreal Forest Soil	FVFTTVWTATKTYRRVFRDWPENVCAENPHKYGTEKDPAVPMSDQSDF*
Ga0150983_146794221	3300011120	Forest Soil	LEFTVEDEGVFKMPWSATMTYRPQVTEWEESICAENPHKYGTEKDVAVPTANKPDF*
Ga0137388_117498971	3300012189	Vadose Zone Soil	GVFTTAWSATKTYRRVFRDWPERVCAENPYRYGTEKDAAVPTAVKPDF*
Ga0137384_110834501	3300012357	Vadose Zone Soil	RRVFRDWPEQVCAENPHKYSTEKDAAVPTADKPDF*
Ga0137361_101220361	3300012362	Vadose Zone Soil	GWAPDPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFRDWPERVCAENPYRYGTEKDAAVPTAIKPNF*
Ga0137358_103478981	3300012582	Vadose Zone Soil	LQLQFTVEDEGVFTTAWSATKTYRCVFRDWPERVCAENPYRYGTEKDAAVPTAVKPDF*
Ga0137395_104171112	3300012917	Vadose Zone Soil	GKALQLQFTVEDEGVFTTAWSATKTYRRAFLDWPERVCAENPNKYGTEKDAAVPTALKPDF*
Ga0137394_113810542	3300012922	Vadose Zone Soil	FTVEDKGVLTTAWSATKTYRRVFRDWPENVCAENPHKYGTEKDAAVPTADKSDF*
Ga0137359_106220621	3300012923	Vadose Zone Soil	FTTAWSATKTYRRVFRDWPERVCAENPYRYGTEKDAAVPTAVKPDF*
Ga0137413_108523012	3300012924	Vadose Zone Soil	QLEFTVEDKGVFAMPWSATMTYRPQVTEWEESICAENPNKYGTEKDVAVPTASKPDF*
Ga0181538_106054771	3300014162	Bog	GRQLICSDSSAQRMSNPNSRGKYLQLQFTVEDEGVFTTVWSATKTYRRVFRDWPEGVCSENPHKYGTEKDAAVPTANKPDF*
Ga0181531_106572671	3300014169	Bog	MRNPNSRGKYLQLQFTVEDPGVFTTPWTATKTFRHVARDWPENACAENPHRYGTDKDPALPTADKADF*
Ga0182036_102008723	3300016270	Soil	DPNYRGKALQLQFTVEDKGVFTTAWSATKTYRRVFRGWPENVCAENPHKYGTEKDAALPTADKPDF
Ga0182034_118444691	3300016371	Soil	NKGKGLQLQFTVEDKVVFTTAWSATKTYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0182038_117736661	3300016445	Soil	TKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAVKPDF
Ga0187821_102029291	3300017936	Freshwater Sediment	LQLEFTVEDEGVFTTPWAATMTYRPQVTEWEESICAENPHKFGTETDVAIPVASKPNF
Ga0187776_100875021	3300017966	Tropical Peatland	PDYKGKALQLQFTIEDPGVFTTAWSAAKTYRRVFRDWPERVCAENPNKYGTEKDAAVPTADKPDF
Ga0187805_105192072	3300018007	Freshwater Sediment	GIGETWAPDPSYKGKALQLQFTVEDKGVFTTAWSATKTYRRVSRDWPENVCAENPHKYGTEKDATVPIAGKPDF
Ga0187766_103522262	3300018058	Tropical Peatland	PLNDSGLRVDPNYKGKGLQLQFTVEDDGVFTMPWSATVTYRRSVNDWFEYVCAENTHKYNTEKDAAVPTADKPDF
Ga0187766_105371493	3300018058	Tropical Peatland	DPNYKGKALQLQFTVEDKGVFTTVWSATKTYRRVSRDWPENVCAENPHKYGTEKDAAVPTAGKPDF
Ga0187765_113136431	3300018060	Tropical Peatland	RGGVVNEGYAPDPSYKGKALQLQFTVQDEGVFTTVWSATKTYRRIFRAWPERVCAENPYRYGTEKDAEVPTAGRPDF
Ga0187784_110576172	3300018062	Tropical Peatland	FTTAWSATKTFRRVFRDWPERACVENPYKYGTEKDAAVPSAVKPDF
Ga0187774_113722142	3300018089	Tropical Peatland	TAWSAAKTYRRVFRDWPERVCAENPNKYGTEKDAAVPAADKPDF
Ga0190272_111307241	3300018429	Soil	KENARLGDGATPGWEPDPNYKGKGLQLQFTVEDEGAFTMTWTATKTYRRVFRDWPEVVCAENPNKYGTERDAQVPTADKPDF
Ga0179592_105259891	3300020199	Vadose Zone Soil	RGGAVGEGWAPDPNYKGKGLQLQFTVEDEEVFTTAWSATKTYRRVFRDWPERVCAENPYKYGTEKDAAVPTAVKPDF
Ga0210403_103954692	3300020580	Soil	RRVFRGWPENVCAENPHRYNTEKDPAVPTADKPDF
Ga0210403_114380341	3300020580	Soil	GVFTTAWSAAKTYRRAFLDWPERVCAENPNKYGTEKDAAVPTAVKPDF
Ga0210399_110350451	3300020581	Soil	RGGGGAIAEGWAADPNYKGKGLQLEFTVEDEGVFTTAWSATKTYRRVFRDWPENVCAENPHKYNTEKDAAVPTAGKPDF
Ga0210395_114042251	3300020582	Soil	PANKGKALQLQFTVEDKDVFTMPWSATKTYRRAVQQWPEQACAENFHKYGSEKDAAVPTADKPDF
Ga0210408_108913942	3300021178	Soil	IAEGWAADPDYKGKGLQLQFTVEDAGVFTTAWSATKTYRRVFRDWPESVCAENPHRYNTEKDPAVPTADKPDF
Ga0210408_112952902	3300021178	Soil	GKHLQLQFTVEDEGVFTMPWSATITYGRSLGYWEENVCAENSHKFNTEKDAAVPTADKPD
Ga0210384_103953362	3300021432	Soil	GLQLQFTVEDEGVFTTAWSATKTYRRIFRDWPENVCAENPHRYNTEKDPAVPTAAKPDF
Ga0210402_106709463	3300021478	Soil	ALQLQFTVEDEGVFTTAWSATKTYRRVFRDWPENVCAENPNKYGTEKDASVPTADKPDF
Ga0210402_107698971	3300021478	Soil	FTTAWSATKTYRRVFREWPESVCAENPHRYNTEKDPAVPTAIKPDF
Ga0210402_110894293	3300021478	Soil	GLQLQFTVEDKEVFTTPWSATKTYRRVFRDWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0210402_112073041	3300021478	Soil	QLQFNVEDEGVFTTAWSATKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAIKPDF
Ga0213853_104990821	3300021861	Watersheds	TTAWSATKTYRRVFRDWPENVCAENPHRYNTEKDPAVPTADRPDF
Ga0242662_101371311	3300022533	Soil	RNGAGAIAEGWAADPNYKGKGLQLQFTVDDAGVFTTAWSATKTYRRVFREWPESVCAENPHRYNTEKDPAVPTAIKPDF
Ga0207704_116390252	3300025938	Miscanthus Rhizosphere	GLQMEFTVEDPGVFTTPWKATMTYRPQITPWEESICAENPYKFGTEKDVAIPTATRPDF
Ga0209131_10214321	3300026320	Grasslands Soil	KALQLQFTVEDEGVFTTAWSATKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAVKPEF
Ga0209131_11883371	3300026320	Grasslands Soil	DPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFLDWPERVCAENPYKYGTEKDAAVPTAVKPDF
Ga0257151_10005915	3300026341	Soil	MAPNPNYKGKALQLQFTVEDDGVFTTAWSATKTYRRVFRDWPERACAENPYKYGTEKDAAVPTAVKPDF
Ga0257169_10382821	3300026469	Soil	GKALQLQFTVEDEGVFTTAWSATKTYRRVFLDWPERVCAENPNKYGTEKDAAVPTAVKPD
Ga0257157_10082304	3300026496	Soil	VRGGAVNEGWAPDPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFLDWPERVCAENPYKYGTEKDAAVPTAVKPDF
Ga0257156_10788162	3300026498	Soil	GKALQLQFTVEDEGVFTTAWSATKTYRRAFLDWPERVCAENPNKYGTEKDAAVPTALKPD
Ga0209648_100218917	3300026551	Grasslands Soil	GGAVNEGWAPDPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFLDWPERVCAENPYKYGTEKDAAVPTAVKPDF
Ga0209648_105739392	3300026551	Grasslands Soil	VEDEGVFTTAWSATKTYRRAFLDWPERVCAENPNKYGTEKDAAVPTAVKPDF
Ga0208993_10995052	3300027480	Forest Soil	GIGEGWAPDPTYKGKGLQVQFTVEDKDVFTTPWSATKTYRRVFRDWPEQVCAENPHKYGTEKDPAVPTADKPDF
Ga0209625_10314471	3300027635	Forest Soil	EDEGVFTTAWSATKTYRRVFRDWPERVCAENPYKYGTEKDAAVPTAVKPDF
Ga0208827_12159131	3300027641	Peatlands Soil	APDPNYKGKALQLQFTVEDKGVFTTAWSATKTYRRVFRGWPENVCAENPHKYGTEKDAAVPTADKPDF
Ga0209701_105317371	3300027862	Vadose Zone Soil	AWSATKTYRRAFLDWPERVCAENPNKYGTEKDAAVPTAVKPDF
Ga0209068_100536191	3300027894	Watersheds	VEDEEVFTTPWSATKTYRRVFRDWPEQVCAENPHKYGTEKDAAVPTADKPDF
Ga0209068_102375772	3300027894	Watersheds	FTTAWSATKTYRRVFRDWPENVCAENPHKYNTEKDAAVPTADKPDF
Ga0209488_101136466	3300027903	Vadose Zone Soil	GWAPDPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFLDWPERVCAENPYKYGTEKDAAVPTAVKPDF
Ga0209488_105282441	3300027903	Vadose Zone Soil	KGKALQLQFTVEDEGVFTTAWSATKTYRRAFLDWPERVCAENPNKYGTEKDAAVPTALKPDF
Ga0209488_110468442	3300027903	Vadose Zone Soil	VWSATKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAVKPDF
Ga0209006_111707802	3300027908	Forest Soil	QLQFTVEDKGVFTTAWSATKTYRRVFRDWPENVCAENPHKYGTEKDAAVPTADKPDF
Ga0209069_101140321	3300027915	Watersheds	GKALQLQFTVEDDGAFTTAWSATKTYRRAFRDWPERACAENPYKYGTEKDAAVPTAVKPD
Ga0209168_104282852	3300027986	Surface Soil	KTYRHVSRDWPENVCAENPHRYGTDKDPAVPTADKPDF
Ga0268266_123605251	3300028379	Switchgrass Rhizosphere	KPKSNEMPPFTVDDEGVFTAPWTATMTYRPQIVEWQESICSENPNKYGTEKDAEIPASAKPDF
Ga0308309_108562631	3300028906	Soil	EFTVEDSNVFTTPWAATMTYRPQVTEWAESICAENPNKYGTEKDAAVPTADKPDF
Ga0308198_10790742	3300030904	Soil	LQLQFTVEDEGVFKMPWSATMTYRPQVTEWEESICAENPNKYGTEKDVAVPTAARPDF
Ga0302325_109524622	3300031234	Palsa	VFTTAWSATKTYRRVFRSWPENVCAENPHKYGTEKDAAIPTADKPDF
Ga0318571_102334842	3300031549	Soil	FTTAWSATKTYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0318573_104777751	3300031564	Soil	GIGAGWAPDPANKGKGLQLQFTVEDKVVFTTAWSATKTYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0306917_106259531	3300031719	Soil	RGGVVNEGYAPDPNYKGKALQLRFTVQDEGVFTTAWSATKTYRRIFSDWPERVCAENPYRYGTEKDPEVPTAGRPDF
Ga0318554_108281662	3300031765	Soil	AWSATKTYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0318547_105186832	3300031781	Soil	TYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0307478_112232181	3300031823	Hardwood Forest Soil	RFTVEDDAVFTTPWSATVTYGHPLGEWKENVCAENPHKYGTEKDAAVPTATRPDF
Ga0318512_105659351	3300031846	Soil	LQFTVEDKEVFTTAWSATKTYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0316038_1057333	3300031868	Soil	DTIGAGWAADPNYKGKGLQLQFTVEDEGVFTTAWSATKTYRRVFRDWPEGVCSENPHRYGTEKDAAVPTADKPDF
Ga0316029_1105801	3300031870	Soil	IDTAPNKTPWSATKTYRHVVREWPERVCAENPHRYGTEQDAAVPMAITPDF
Ga0306921_119167662	3300031912	Soil	GEGWAPDPSYKGKGLQLQFTVEDAGVFTTAWSATKTYRRVSRGWPENVCAENPHRYNTEKEPAVPRADKPDF
Ga0310912_113863412	3300031941	Soil	VEDEGAFTTAWSATKTYRRLFREWPESVCAENTHKFGTEKDAAVPTADKPDF
Ga0306926_104977673	3300031954	Soil	PNYKGKALQLQFTVEDEGAFTTAWSATKTYRRLFREWPESVCAENTHKFGTEKDAAVPTADKPDF
Ga0310911_104513671	3300032035	Soil	LQLQFTVEDKVVFTTAWSATKTYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0307471_1013806283	3300032180	Hardwood Forest Soil	QLQFTVEDEGVFTTAWSATKTYRRVFRDWPERVCAENPYKYGTEKDAAVPTAVKPDF
Ga0307471_1037337461	3300032180	Hardwood Forest Soil	VEDEGAFTTAWSATKTYRRSFLDWPERVCAENPNKYGTEKDAAVPTAVKPDF
Ga0307471_1043454592	3300032180	Hardwood Forest Soil	YLQLFFTVEDEGVFTTPWSATITYRRDRDEWEEAVCAENPYKYGTEKDAAVPTADTPDF
Ga0306920_1000562778	3300032261	Soil	IGAGWAPDPANKGKGLQLQFTVEDKDVFTTAWSATKTYRRVFREWPEQVCAENPHKYSTEKDAAVPTADKPDF
Ga0306920_1041100871	3300032261	Soil	WAPDPNYKGKALQLQFTVEDEGVFTTAWSATKTYRRVFRDWPERACAENPYRYGTEKDAAVPTAVKPDF
Ga0348332_141184713	3300032515	Plant Litter	DPNYKGKGLQLQFTVEDEGVFTTAWSATKTYRRVFRDWPEGVCSENPHRYGTEKDAAVPTADKPDF
Ga0335081_113038481	3300032892	Soil	PSYKGKALQLQFTVEDKGVFTTAWSATKTYRRVSRDWPENVCAENPHKYGTEKDATVPIAGKPDF
Ga0364931_0208377_3_161	3300034176	Sediment	VEDEGVFTTPWTATMTYRPQVIEWQESICAENPNKYGTEKDAAVPTAEKPDF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084323

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences