Metagenome / Metatranscriptome Family F084320

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084320
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	43 residues
Representative Sequence	TILEERLPVDLGMPAEVITHLECLEDHAEVHHEQHYTGKPD
Number of Associated Samples	98
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	88.39 %
% of genes from short scaffolds (< 2000 bps)	82.14 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (20.536 % of family members)
Environment Ontology (ENVO)	Unclassified (50.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.786 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.64% β-sheet: 0.00% Coil/Unstructured: 75.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13545	HTH_Crp_2	13.39
PF01545	Cation_efflux	4.46
PF13620	CarboxypepD_reg	3.57
PF03006	HlyIII	3.57
PF00589	Phage_integrase	2.68
PF00990	GGDEF	2.68
PF05187	ETF_QO	1.79
PF00171	Aldedh	1.79
PF13442	Cytochrome_CBB3	1.79
PF00933	Glyco_hydro_3	1.79
PF02583	Trns_repr_metal	1.79
PF13180	PDZ_2	1.79
PF02321	OEP	0.89
PF01844	HNH	0.89
PF01022	HTH_5	0.89
PF13424	TPR_12	0.89
PF13709	DUF4159	0.89
PF14107	DUF4280	0.89
PF14714	KH_dom-like	0.89
PF06181	Urate_ox_N	0.89
PF02012	BNR	0.89
PF07883	Cupin_2	0.89
PF04311	DUF459	0.89
PF01433	Peptidase_M1	0.89
PF02838	Glyco_hydro_20b	0.89
PF03466	LysR_substrate	0.89
PF01551	Peptidase_M23	0.89
PF13883	Pyrid_oxidase_2	0.89
PF12371	TMEM131_like_N	0.89
PF04389	Peptidase_M28	0.89
PF14559	TPR_19	0.89
PF07238	PilZ	0.89
PF01636	APH	0.89
PF04879	Molybdop_Fe4S4	0.89
PF00571	CBS	0.89
PF13462	Thioredoxin_4	0.89
PF08239	SH3_3	0.89
PF13432	TPR_16	0.89
PF12769	PNTB_4TM	0.89
PF05532	CsbD	0.89
PF01925	TauE	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	4.46
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	4.46
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	4.46
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	3.57
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.79
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.79
COG2440	Ferredoxin-like protein FixX	Energy production and conversion [C]	1.79
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	1.79
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.79
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	1.79
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.79
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.79
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.89
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.89
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.89
COG3525	N-acetyl-beta-hexosaminidase	Carbohydrate transport and metabolism [G]	0.89
COG3748	Uncharacterized membrane protein	Function unknown [S]	0.89
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	32.14 %
Unclassified	root	N/A	28.57 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	19.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.57 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.89 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.89 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	2.68 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.79 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	1.79 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.79 %
Aquabacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium	0.89 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.89 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.68 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1.79 %
Terriglobus saanensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis	1.79 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.79 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.89 %
Aquabacterium soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium soli	0.89 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.68 %
Terriglobus saanensis SP1PR4	strain	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis → Terriglobus saanensis SP1PR4	1.79 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1.79 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.79 %
Thermoflavifilum	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Thermoflavifilum	0.89 %
Aquabacterium soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium soli	0.89 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004152\|Ga0062386_101398142	Not Available	583	Open in IMG/M
3300004598\|Ga0068975_1215083	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300004604\|Ga0068943_1287300	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300004618\|Ga0068963_1358937	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300004970\|Ga0072320_1287348	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005332\|Ga0066388_108743169	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005468\|Ga0070707_101412249	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Thermoflavifilum	663	Open in IMG/M
3300005542\|Ga0070732_10274694	All Organisms → cellular organisms → Bacteria → Acidobacteria	1010	Open in IMG/M
3300006354\|Ga0075021_10609618	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300009520\|Ga0116214_1098680	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300009521\|Ga0116222_1082431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1387	Open in IMG/M
3300009524\|Ga0116225_1531223	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300009616\|Ga0116111_1060506	All Organisms → cellular organisms → Bacteria → Acidobacteria	1056	Open in IMG/M
3300009623\|Ga0116133_1079109	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300009637\|Ga0116118_1213487	Not Available	602	Open in IMG/M
3300009637\|Ga0116118_1259247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	532	Open in IMG/M
3300009839\|Ga0116223_10064229	All Organisms → cellular organisms → Bacteria → Proteobacteria	2364	Open in IMG/M
3300010341\|Ga0074045_10828869	Not Available	584	Open in IMG/M
3300010343\|Ga0074044_10594058	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300010379\|Ga0136449_101216440	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300011015\|Ga0138535_107504	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300011081\|Ga0138575_1025907	Not Available	587	Open in IMG/M
3300011081\|Ga0138575_1183811	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	608	Open in IMG/M
3300011082\|Ga0138526_1055858	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300011084\|Ga0138562_1189570	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300011090\|Ga0138579_1120433	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300011109\|Ga0138539_1107017	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300011305\|Ga0138532_1126774	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300014153\|Ga0181527_1130243	Not Available	1129	Open in IMG/M
3300014156\|Ga0181518_10001313	All Organisms → cellular organisms → Bacteria	25661	Open in IMG/M
3300014159\|Ga0181530_10359012	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300014164\|Ga0181532_10057379	All Organisms → cellular organisms → Bacteria → Acidobacteria	2544	Open in IMG/M
3300014168\|Ga0181534_10111010	Not Available	1379	Open in IMG/M
3300014168\|Ga0181534_11011403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	502	Open in IMG/M
3300014199\|Ga0181535_10688433	Not Available	582	Open in IMG/M
3300014200\|Ga0181526_10579247	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300014200\|Ga0181526_10761947	Not Available	610	Open in IMG/M
3300014501\|Ga0182024_10852542	Not Available	1104	Open in IMG/M
3300014501\|Ga0182024_11806148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	684	Open in IMG/M
3300014501\|Ga0182024_12613907	Not Available	542	Open in IMG/M
3300014839\|Ga0182027_12008730	Not Available	553	Open in IMG/M
3300017822\|Ga0187802_10354951	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300017924\|Ga0187820_1086276	All Organisms → cellular organisms → Bacteria → Acidobacteria	889	Open in IMG/M
3300017924\|Ga0187820_1122760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300017926\|Ga0187807_1282849	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300017930\|Ga0187825_10239152	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300017935\|Ga0187848_10284876	Not Available	692	Open in IMG/M
3300017938\|Ga0187854_10057738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1916	Open in IMG/M
3300017946\|Ga0187879_10547116	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300017946\|Ga0187879_10631165	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300017973\|Ga0187780_10170065	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1515	Open in IMG/M
3300018002\|Ga0187868_1203082	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300018033\|Ga0187867_10809740	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	508	Open in IMG/M
3300018034\|Ga0187863_10637278	Not Available	600	Open in IMG/M
3300018038\|Ga0187855_10796919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	551	Open in IMG/M
3300018042\|Ga0187871_10257191	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300018044\|Ga0187890_10750045	Not Available	552	Open in IMG/M
3300018047\|Ga0187859_10423393	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300018062\|Ga0187784_10083735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2593	Open in IMG/M
3300018086\|Ga0187769_10413829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1014	Open in IMG/M
3300019275\|Ga0187798_1275473	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300021181\|Ga0210388_10104905	All Organisms → cellular organisms → Bacteria	2423	Open in IMG/M
3300021404\|Ga0210389_10009801	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7407	Open in IMG/M
3300021420\|Ga0210394_11343953	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300021420\|Ga0210394_11811773	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300021477\|Ga0210398_10316846	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300021559\|Ga0210409_10428842	Not Available	1181	Open in IMG/M
3300023090\|Ga0224558_1153790	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300024227\|Ga0228598_1040676	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300025496\|Ga0208191_1014065	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2097	Open in IMG/M
3300025576\|Ga0208820_1063634	Not Available	986	Open in IMG/M
3300025914\|Ga0207671_11459363	Not Available	529	Open in IMG/M
3300027497\|Ga0208199_1108634	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300027625\|Ga0208044_1126866	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300027905\|Ga0209415_10036431	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	6847	Open in IMG/M
3300027905\|Ga0209415_10901252	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis → Terriglobus saanensis SP1PR4	601	Open in IMG/M
3300028268\|Ga0255348_1070971	Not Available	603	Open in IMG/M
3300028560\|Ga0302144_10300334	Not Available	520	Open in IMG/M
3300028566\|Ga0302147_10159017	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300028574\|Ga0302153_10301201	Not Available	548	Open in IMG/M
3300028873\|Ga0302197_10380398	Not Available	626	Open in IMG/M
3300028882\|Ga0302154_10018431	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4335	Open in IMG/M
3300029914\|Ga0311359_10024459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	7155	Open in IMG/M
3300029914\|Ga0311359_10246078	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300029945\|Ga0311330_10761484	Not Available	738	Open in IMG/M
3300029956\|Ga0302150_10291666	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis → Terriglobus saanensis SP1PR4	609	Open in IMG/M
3300029994\|Ga0302283_1078772	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300030011\|Ga0302270_10099809	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300030020\|Ga0311344_11221909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium soli	565	Open in IMG/M
3300030044\|Ga0302281_10224980	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	776	Open in IMG/M
3300030524\|Ga0311357_10429002	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300031261\|Ga0302140_10851612	Not Available	644	Open in IMG/M
3300031524\|Ga0302320_10231391	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2579	Open in IMG/M
3300031525\|Ga0302326_13702538	Not Available	503	Open in IMG/M
3300031708\|Ga0310686_116324960	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300031719\|Ga0306917_10055018	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2694	Open in IMG/M
3300031748\|Ga0318492_10371485	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	750	Open in IMG/M
3300031788\|Ga0302319_11485666	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300031805\|Ga0318497_10716773	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	561	Open in IMG/M
3300032160\|Ga0311301_10817369	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300032160\|Ga0311301_12404512	Not Available	594	Open in IMG/M
3300032805\|Ga0335078_10019191	All Organisms → cellular organisms → Bacteria	10168	Open in IMG/M
3300033004\|Ga0335084_11997533	Not Available	565	Open in IMG/M
3300033134\|Ga0335073_11336712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300033134\|Ga0335073_12114821	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	509	Open in IMG/M
3300033887\|Ga0334790_019433	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3108	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.96%
Aquatic	Environmental → Aquatic	31.25%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.43%
Freshwater	Environmental → Aquatic → Freshwater	30.36%
Peat	Environmental → Terrestrial → Peat	20.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.79%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	30.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	19.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.04%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.25%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.46%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	20.54%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	13.39%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	8.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.46%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.57%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.57%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.68%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.68%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.79%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.79%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004598	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004604	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 31 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004618	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004970	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011015	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 13 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011081	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011084	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011090	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011109	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 18 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011305	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028268	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v5	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029994	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062386_1013981422	3300004152	Bog Forest Soil	LEERLPGELTMPAEVITHLESREDHAEVHHREHYTGLPQ*
Ga0068975_12150831	3300004598	Peatlands Soil	HRLATILEERLPTDLGVPAEVITHLECLEDHADVHHDQHYTGKPE*
Ga0068943_12873001	3300004604	Peatlands Soil	LATILEERLPSELGMPAEVITHLESVEDHADVHREPHYTGKPE*
Ga0068963_13589371	3300004618	Peatlands Soil	VSEAHRLATILEERLPVELEMPAEVITHLECLEDHADVHSAQHYIGKPD*
Ga0072320_12873481	3300004970	Peatlands Soil	ATILEERLPVELEMPAEVITHLECLEDHADVHSAQHYIGKPD*
Ga0066388_1087431692	3300005332	Tropical Forest Soil	EAHRLATALEERLPVELGKPAEVITHLESIDDHEDVHATEHYTGRPE*
Ga0070707_1014122492	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TILEERLPIDLGTPAEVITHLECLEDHADVHHEQHYTGKPE*
Ga0070732_102746942	3300005542	Surface Soil	LATALEERLPAQLGSPAEVITHLESVEDHEAVHSQEHYTGRPE*
Ga0075021_106096181	3300006354	Watersheds	RLPAELDMPAEVVTHLEALEDHDHVHRQEHYTGKPQ*
Ga0116214_10986801	3300009520	Peatlands Soil	LLFPRLTPVSEAHRLATILEERLPVELEMPAEVITHLECLEDHADVHSAQHYIGKPD*
Ga0116222_10824311	3300009521	Peatlands Soil	TSVSQAHSLATILEERLPVDLGMPAEVITHLECLEDHAEVHHEQHYTGKPD*
Ga0116225_15312231	3300009524	Peatlands Soil	LPTDLGVPAEVITHLECLEDHADVHHDQHYTGKPE*
Ga0116111_10605063	3300009616	Peatland	PAELAMPAEVMTHLESLGDHSDVHRERYYTGKPE*
Ga0116133_10791092	3300009623	Peatland	EERLAETLGQPSEVFTHLEAQDDHEVVHRAMHYTGKPGER*
Ga0116118_12134872	3300009637	Peatland	LLYHLEERLPAKLGMPAEVMTHLEFLEDHADVHREQHYTGKPE*
Ga0116118_12592471	3300009637	Peatland	ERLPAELGMPAEVITHLESLEDHGEVHREQHYTGKPE*
Ga0116223_100642293	3300009839	Peatlands Soil	PVDLGMPAEVITHLECLEDHAEVHHEQHYTGKPD*
Ga0074045_108288691	3300010341	Bog Forest Soil	RLPAELGMPAEVITHLESLEDHADVHREQHYTGKPE*
Ga0074044_105940581	3300010343	Bog Forest Soil	PPELSVPAEVFTHLESAEDHAAVHAKEHYTGKPE*
Ga0136449_1012164401	3300010379	Peatlands Soil	TSVSEAHRLATILEERLPAELGMPAEVITHLEPLEDHAEVHREQHYTGKPA*
Ga0138535_1075041	3300011015	Peatlands Soil	RLPTDLGVPAEVITHLECLEDHADVHHDQHYTGKPE*
Ga0138575_10259072	3300011081	Peatlands Soil	FPRLTSVSEAHRLATILEERLPVDLGMPAEVITHLECLEDHADVHHEEHYTGKPE*
Ga0138575_11838111	3300011081	Peatlands Soil	LPEGLGVPAEVITHLESLEDHASVHHAEHYTGRPL*
Ga0138526_10558581	3300011082	Peatlands Soil	RLATILEERLPTDLGVPAEVITHLECLEDHADVHHDQHYTGKPE*
Ga0138562_11895702	3300011084	Peatlands Soil	VSEAHRLATILEERLPTDLGVPAEVITHLECLEDHADVHHDQHYTGKPE*
Ga0138579_11204331	3300011090	Peatlands Soil	SVSEAHRLATILEERLPTDLGVPAEVITHLECLEDHADVHHDQHYTGKPE*
Ga0138539_11070172	3300011109	Peatlands Soil	ALEERLPVELGSRAEVITHLESLEDHEHVHSTGHYTGRPE*
Ga0138532_11267741	3300011305	Peatlands Soil	TILEERLPVELEMPAEVITHLECLEDHADVHSAQHYIGKPD*
Ga0181527_11302432	3300014153	Bog	ATILEERLPAELGMPAEVVTHLEALEDHAVVHHREHYTGKPG*
Ga0181524_105206242	3300014155	Bog	AQDLEMPAEVTTHLESLEDHTVVHHVQHYTGRPD*
Ga0181518_1000131319	3300014156	Bog	MAVGEAHRLATLLEERLSQELSVPAEVFTDLESAEDHAAVHAKEQYTGKPEETPLQV*
Ga0181530_103590122	3300014159	Bog	GEAHRLATLLEERLPPELSVPAEVFTHLESVEDHAAVHTKEHYTGRPE*
Ga0181532_100573794	3300014164	Bog	LLEERLPRELSVPAEVFTHLESAEDHAVVHAKEHYTGKPE*
Ga0181534_101110102	3300014168	Bog	AHRLATILEERLPRELGAPAEVITHLESSEDHADVHYERHYTGKPE*
Ga0181534_110114031	3300014168	Bog	SLTSVSEAHTLATTLEERLPKELGMPAEVITHLEALEDHADVHHSQHYTGKPD*
Ga0181535_106884332	3300014199	Bog	EAHRLATLLEERLPCELSVPAEVFTHLESVEDHAAVHAQEHYTGKPE*
Ga0181526_105792472	3300014200	Bog	PAELGVPAEVITHLESLEDHADVHCERHYTGKPD*
Ga0181526_107619471	3300014200	Bog	EAHRLATLLEERLPETLGQPAELITHLEAQDDHEAVHRALHYTGKPGVR*
Ga0182011_107524882	3300014496	Fen	AIDSEMPSEVTTHLESREDHSKVHHVQHYTGRPD*
Ga0182024_108525423	3300014501	Permafrost	LEERLPSELGMPAEIITHLECLEDHADVHHEQHYTGKPE*
Ga0182024_118061482	3300014501	Permafrost	VSEAHGLAKVLEERLPVDLGMPAKVITHLECVEDHADVHHYQ
Ga0182024_126139072	3300014501	Permafrost	PVELGIPAEVSTHLESLEDHAAVHHHMHYTGKPD*
Ga0182027_120087302	3300014839	Fen	ERLPAELGMPAEVITHLEALEDHAEVHHHEHYTGKPGSG*
Ga0187802_103549512	3300017822	Freshwater Sediment	HRLATMLEERLPVDLGMPAEVITHLECLEDHADVHHEEHYTGKPE
Ga0187820_10862762	3300017924	Freshwater Sediment	FPRLTSVSEAHRLATMLEERLPVDLGMPAEVITHLECLEDHADVHHEEHYTGKPE
Ga0187820_11227601	3300017924	Freshwater Sediment	TILEERLPVDLGMPAEVITHLECLEDHAEVHHEQHYTGKPD
Ga0187807_12828492	3300017926	Freshwater Sediment	EAHRLATILEERLPVDLGMPAEVITHLECLEDHADVHREEHYTGKPE
Ga0187825_102391521	3300017930	Freshwater Sediment	AHRLATALEERLPVALGKPAEVITHLESVEDHEHVHATEHYTGRPE
Ga0187848_102848762	3300017935	Peatland	PRLTLVSDAHRLATILEERLPAELGMPAEVITHLEALEDHAEVHHREHYTGKPG
Ga0187854_100577381	3300017938	Peatland	RLPAELGMPAEVVTHLESLEDHADVHHEQHYTGKPD
Ga0187879_105471162	3300017946	Peatland	ATALEERLPAELGMPAEVITHLEALEDHAEVHHHQHYTGKPG
Ga0187879_106311652	3300017946	Peatland	ATLLEERLAETLGQPSEVFTHLEAQDDHEVVHRAMHYTGKPGER
Ga0187780_101700653	3300017973	Tropical Peatland	RLATALEEGLPERLRAPAEVITHLESIEDHENVHSREHYTGRPGVGITDR
Ga0187782_102971491	3300017975	Tropical Peatland	ERLAVDLDMPAEVNTHLESLDDHSEVHGVEHYTGRPD
Ga0187868_12030821	3300018002	Peatland	ALEERLPNELHMPAEVITHLESAEDHALVHHRQHYTGKPD
Ga0187867_108097401	3300018033	Peatland	EERLAEDLEMPAEVITHLESLEDHAEVHRVEHYTGRPD
Ga0187863_106372782	3300018034	Peatland	VETLGQPAEVITHLEARDDHEAVHRAVHYTGKPGER
Ga0187855_107969191	3300018038	Peatland	LLFPRHTSVSEAHGLATILEERLPVELGMPAEVITHLESVEDHAEVHHRQHYTGRPD
Ga0187871_102571911	3300018042	Peatland	RLATLLEERLPQELSVPAEVFTHLESAEDHAAVHAKEHYTGKPE
Ga0187890_107500452	3300018044	Peatland	EERLPQELTVPAEVFTHLESAEDHEAVHTRQHYTGKPE
Ga0187859_104233931	3300018047	Peatland	LPAELGMPAEVTTHLESLEDHADVHREQHYTGKPD
Ga0187784_100837351	3300018062	Tropical Peatland	ERLPVELHTPAEVITHLESLEDHEHVHATEHYTGRPE
Ga0187769_104138292	3300018086	Tropical Peatland	MLEERLPTELKMPAEVVTHLEALEDHADVHREDHYTGKPE
Ga0187798_12754732	3300019275	Peatland	LATLLEERLPEALGQPAEVITHLEAQDDHEMVHRDPHYTGKP
Ga0210388_101049052	3300021181	Soil	LFPRQTSVSEAHRLATIPEERLPVNLGMPAEVITHMECLEDHAEVHREQHYTGKPE
Ga0210389_100098017	3300021404	Soil	LPVELGRPAEVITHLESLEDHEHVHSTGHVTDRTG
Ga0210394_113439532	3300021420	Soil	LTSVSDAHRLATILEERLPINLGMPAEVITHLECLEDHADVHHEQHYTGKPE
Ga0210394_118117731	3300021420	Soil	EERLPTDLGMPAEVITHLECLEDHADVHHDQHYTGKPE
Ga0210398_103168462	3300021477	Soil	LFPRQTSVSEAHRLATIPEERLPVNLGMPAEVITHMECLEDHAEVH
Ga0210409_104288422	3300021559	Soil	ELWSTEIEMPAEVMTHLESLEDRADVHYEQHYTGKPE
Ga0224558_11537901	3300023090	Soil	ERLPAELGTPAEVITHLESLEDHADVHREQHYTGKPE
Ga0228598_10406761	3300024227	Rhizosphere	RMTSVSEAHRLATILEERLPTDLGMPAEVITHLECLEDHAEVHHDQHYTGKPE
Ga0208194_10455752	3300025412	Peatland	QLALDLEMPAEVTTHLESLEDHSEVHHMQHYTGRPD
Ga0208191_10140653	3300025496	Peatland	TILEERLPAELAMPAEVMTHLESLGDHSDVHRERYYTGKPE
Ga0208820_10636342	3300025576	Peatland	LLYHLEERLPAKLGMPAEVMTHLEFLEDHADVHREQHYTGKPE
Ga0207671_114593631	3300025914	Corn Rhizosphere	RLATLLEERLMEALGQPAEVITHLEAQDDHEVVHRAAHYTGKPGSERSND
Ga0208199_11086341	3300027497	Peatlands Soil	EAHRLATILEERLPVELEMPAEVITHLECLEDHADVHSAQHYIGKPD
Ga0208044_11268661	3300027625	Peatlands Soil	LPTDLGVPAEVITHLECLEDHADVHHDQHYTGKPE
Ga0209415_100364311	3300027905	Peatlands Soil	HLLFPRLTSVSEAHRLATILEERLPVDLGMPAEVITHLECLEDHADVHHEEHYTGKPE
Ga0209415_109012522	3300027905	Peatlands Soil	LFPRLTPVSEAHGLATILEERLPAELGTPAEVITHLEALEDHAEVHHREHYTGKPE
Ga0255348_10709711	3300028268	Soil	VEERLAAELTTPTEVITHMEAEEDHESVHAHEHYTGLPL
Ga0302144_103003342	3300028560	Bog	TSVSETHGLATILEERLPAELGMPAEVITHLEALEDHADVHHHQHYTGKPE
Ga0302147_101590173	3300028566	Bog	LTEEIGMPAEVITHLESLEDHADVNHSQHYTGKPE
Ga0302153_103012011	3300028574	Bog	AHGLATILEERLPAELGMPAEVITHLEALEDHADVHHHQHYTGKPE
Ga0302197_103803982	3300028873	Bog	DAHALATTIEERLPAELGMPAEIITHLEALEDHAEVHRREHYTGKPE
Ga0302154_100184311	3300028882	Bog	HALATTIEERLPAELGMPAEIITHLEALEDHAEVHRREHYTGKPE
Ga0311359_100244598	3300029914	Bog	TSVSDAHALATILEERLPAELGMPAEVITHLEALEDHAEVHHHQHYTGKPG
Ga0311359_102460784	3300029914	Bog	LEERLPPELSVPAEVFTHLESVEDHAAVHTKEHYTGKPE
Ga0311330_107614843	3300029945	Bog	TSVSDAHALATTIEERLPVELGMPAEIITHLEALEDHAQVHRREHYTGKPE
Ga0302150_102916661	3300029956	Bog	ILEERLPAELGMPAEVITHLEALEDHAVVHHREHYTGKPG
Ga0302283_10787723	3300029994	Fen	LFPNLTSVSEAHGLATILEERLPAELGMPAEVITHLEALEDHAVVHHREHYTGKPG
Ga0302270_100998093	3300030011	Bog	VSEAHGLATILEERLPAELGMPAEVITHLEALEDHAVVHHREHYTGKPG
Ga0311344_100166079	3300030020	Bog	EERLALDSEMPLEVTTHLESREDHSKVHHVQHYTGRPD
Ga0311344_112219091	3300030020	Bog	HGLATVLEERLPMELGIPAEVITHLECVEDHAVVHHHEHYTGKPD
Ga0302281_102249802	3300030044	Fen	RLPVELGKPAEVTTHLESLEDHAAVHHHIHYTGKPD
Ga0311357_104290021	3300030524	Palsa	NLATMVEERLPVELGMPAEVVTHLEGLEDHSEAHHHRQRYTGKPD
Ga0302140_108516122	3300031261	Bog	SEAHALATMIEERLPVELGVPAELITHIEALEDHAEVHHHEHYTGKPG
Ga0302320_102313911	3300031524	Bog	LLFPRLTSVSDAHALATTVEERLPAELGMPAEIITHLEALEDHAEVHRRQHYTGKPE
Ga0302326_137025382	3300031525	Palsa	RLAAELTMPTEVITHMEAEEDHESVHAREHYTGLPS
Ga0310686_1163249601	3300031708	Soil	ATPVGAAHRLATQLEERLPQELSVPAEVFTNLESVEDHAAVHTKEHYTGKPE
Ga0306917_100550183	3300031719	Soil	VIEERLPAELSMPAEVITHLESEEDHQEVHTREHYTGLPL
Ga0318492_103714852	3300031748	Soil	VIEERLPAELSMPAEVITHLESEEDHQEVHTREHYT
Ga0302319_114856662	3300031788	Bog	ATVLEERLAAEMTVPTEVVTHLEAAEDHASVHHWAHYTGLPK
Ga0318497_107167731	3300031805	Soil	VIEERLPAELSMPAEVITHLESEEDHQEVHTREHY
Ga0311301_108173691	3300032160	Peatlands Soil	TSVSEAHRLATILEERLPAELGMPAEVITHLEPLEDHAEVHREQHYTGKPA
Ga0311301_124045121	3300032160	Peatlands Soil	LPADLGMPAEVITHLESLEDHGDVHGARHYTGKPE
Ga0335078_100191918	3300032805	Soil	LFPRLTSVSEAHRLATILEERLPAELGMPAEVMTHLESVEDHADVHHGQHYTGKPE
Ga0335084_119975332	3300033004	Soil	TIEEELPRGLEVPAEVITHLESMEDHADVHKAVHYTGRPS
Ga0335073_113367122	3300033134	Soil	TLLEERLGETLGQPAEVITHLEAQDDHEVVHRAAHYTGKPASR
Ga0335073_121148212	3300033134	Soil	TVLEERLPVELGMRAEVLTHLEALEDHTDVHSREHYTGKPA
Ga0326727_104023582	3300033405	Peat Soil	ERLAVDLEMPAEVTTHLESIEDHSVVHHMQHYTGRPD
Ga0334790_019433_2976_3107	3300033887	Soil	LATHVEERLAETLGQPAEVITHLEALDDHEAVHRALHYTGKPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084320

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences