Metagenome / Metatranscriptome Family F084160

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084160
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	54 residues
Representative Sequence	MKRKKAQIEKASAGTVLAARARAEGNKWTDAEREKLGEQFMKLYYGGETKPATTRRR
Number of Associated Samples	95
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	28.57 %
% of genes near scaffold ends (potentially truncated)	24.11 %
% of genes from short scaffolds (< 2000 bps)	72.32 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.750 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (8.929 % of family members)
Environment Ontology (ENVO)	Unclassified (38.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.929 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.29% β-sheet: 0.00% Coil/Unstructured: 64.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01850	PIN	16.07
PF03551	PadR	1.79
PF10431	ClpB_D2-small	1.79
PF02254	TrkA_N	1.79
PF10137	TIR-like	0.89
PF07394	DUF1501	0.89
PF03358	FMN_red	0.89
PF13884	Peptidase_S74	0.89
PF01175	Urocanase	0.89
PF01757	Acyl_transf_3	0.89
PF08534	Redoxin	0.89
PF05336	rhaM	0.89
PF02565	RecO_C	0.89
PF00437	T2SSE	0.89
PF13927	Ig_3	0.89
PF07726	AAA_3	0.89
PF01139	RtcB	0.89
PF03683	UPF0175	0.89
PF01370	Epimerase	0.89
PF03466	LysR_substrate	0.89
PF00587	tRNA-synt_2b	0.89
PF02080	TrkA_C	0.89
PF00579	tRNA-synt_1b	0.89
PF14294	DUF4372	0.89
PF17164	DUF5122	0.89
PF04471	Mrr_cat	0.89
PF05016	ParE_toxin	0.89
PF13183	Fer4_8	0.89
PF00578	AhpC-TSA	0.89
PF15919	HicB_lk_antitox	0.89
PF14312	FG-GAP_2	0.89
PF07670	Gate	0.89
PF03814	KdpA	0.89
PF13975	gag-asp_proteas	0.89
PF00185	OTCace	0.89
PF02661	Fic	0.89
PF00109	ketoacyl-synt	0.89
PF01381	HTH_3	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.79
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.79
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.79
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG1381	Recombinational DNA repair protein RecO (RecF pathway)	Replication, recombination and repair [L]	0.89
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	0.89
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	0.89
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	0.89
COG2987	Urocanate hydratase	Amino acid transport and metabolism [E]	0.89
COG3254	L-rhamnose mutarotase	Cell wall/membrane/envelope biogenesis [M]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	48.21 %
Unclassified	root	N/A	31.25 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	43.75 %
Unclassified	root	N/A	31.25 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.79 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	13.39 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	10.71 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	6.25 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.89 %
unclassified Armatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
unclassified Opitutae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae	12.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.71 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	6.25 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.89 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.89 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Opitutae bacterium Tous-C5TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	12.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.71 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	5.36 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.89 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.89 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Opitutae bacterium Tous-C5TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	12.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.71 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	2.68 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	2.68 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.89 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.89 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Opitutae bacterium Tous-C5TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	12.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.71 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2.68 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	2.68 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.89 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.89 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_105867588	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300001452\|JGI20203J14952_1021729	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300004092\|Ga0062389_100418514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1465	Open in IMG/M
3300004092\|Ga0062389_103652525	Not Available	577	Open in IMG/M
3300004635\|Ga0062388_100643956	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300005557\|Ga0066704_10272388	Not Available	1148	Open in IMG/M
3300005557\|Ga0066704_10812485	Not Available	581	Open in IMG/M
3300005712\|Ga0070764_10611968	Not Available	665	Open in IMG/M
3300005829\|Ga0074479_10349439	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300006046\|Ga0066652_100206228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	1694	Open in IMG/M
3300006638\|Ga0075522_10052108	Not Available	2363	Open in IMG/M
3300009012\|Ga0066710_100325245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2263	Open in IMG/M
3300009012\|Ga0066710_102324223	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	779	Open in IMG/M
3300009012\|Ga0066710_103533638	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300009137\|Ga0066709_100097160	All Organisms → cellular organisms → Bacteria	3591	Open in IMG/M
3300009524\|Ga0116225_1569787	Not Available	501	Open in IMG/M
3300009617\|Ga0116123_1118636	Not Available	695	Open in IMG/M
3300009630\|Ga0116114_1063974	Not Available	1017	Open in IMG/M
3300009640\|Ga0116126_1217181	Not Available	610	Open in IMG/M
3300009644\|Ga0116121_1004415	All Organisms → cellular organisms → Bacteria	5023	Open in IMG/M
3300009700\|Ga0116217_10064825	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2585	Open in IMG/M
3300010343\|Ga0074044_10272597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1115	Open in IMG/M
3300010391\|Ga0136847_10310008	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300011271\|Ga0137393_11451166	Not Available	576	Open in IMG/M
3300011432\|Ga0137428_1094270	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	844	Open in IMG/M
3300011439\|Ga0137432_1014758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2212	Open in IMG/M
3300012199\|Ga0137383_10777183	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M
3300012204\|Ga0137374_11118897	Not Available	559	Open in IMG/M
3300012210\|Ga0137378_10213469	All Organisms → cellular organisms → Bacteria	1796	Open in IMG/M
3300012354\|Ga0137366_10337138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1105	Open in IMG/M
3300012923\|Ga0137359_10642504	All Organisms → cellular organisms → Bacteria → PVC group	928	Open in IMG/M
3300012956\|Ga0154020_10133034	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2384	Open in IMG/M
3300012964\|Ga0153916_11306061	Not Available	803	Open in IMG/M
3300014151\|Ga0181539_1053280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	1886	Open in IMG/M
3300014155\|Ga0181524_10281883	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	766	Open in IMG/M
3300014158\|Ga0181521_10251861	Not Available	932	Open in IMG/M
3300014199\|Ga0181535_10128744	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1605	Open in IMG/M
3300014490\|Ga0182010_10273976	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	901	Open in IMG/M
3300014491\|Ga0182014_10548766	Not Available	563	Open in IMG/M
3300014496\|Ga0182011_10900983	Not Available	550	Open in IMG/M
3300014499\|Ga0182012_10153863	Not Available	1656	Open in IMG/M
3300014502\|Ga0182021_10538929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	1394	Open in IMG/M
3300014838\|Ga0182030_10810377	Not Available	855	Open in IMG/M
3300014839\|Ga0182027_10220819	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	2185	Open in IMG/M
3300014839\|Ga0182027_10308452	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300017929\|Ga0187849_1239747	Not Available	694	Open in IMG/M
3300017974\|Ga0187777_11116598	Not Available	574	Open in IMG/M
3300018003\|Ga0187876_1049717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1737	Open in IMG/M
3300018009\|Ga0187884_10176869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	889	Open in IMG/M
3300018017\|Ga0187872_10204613	Not Available	909	Open in IMG/M
3300018022\|Ga0187864_10417701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	575	Open in IMG/M
3300018033\|Ga0187867_10018657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	4523	Open in IMG/M
3300018033\|Ga0187867_10665087	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300018035\|Ga0187875_10416857	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300019082\|Ga0187852_1431139	Not Available	512	Open in IMG/M
3300019242\|Ga0181502_1525398	Not Available	565	Open in IMG/M
3300020074\|Ga0194113_10347506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1107	Open in IMG/M
3300020083\|Ga0194111_10576034	Not Available	710	Open in IMG/M
3300020084\|Ga0194110_10284874	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300020109\|Ga0194112_10040531	Not Available	4811	Open in IMG/M
3300020220\|Ga0194119_10022995	All Organisms → cellular organisms → Bacteria	6926	Open in IMG/M
3300020222\|Ga0194125_10020369	All Organisms → cellular organisms → Bacteria	7890	Open in IMG/M
3300021181\|Ga0210388_10148774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2034	Open in IMG/M
3300025444\|Ga0208189_1036460	Not Available	973	Open in IMG/M
3300025574\|Ga0208717_1117426	Not Available	583	Open in IMG/M
3300025634\|Ga0208589_1011081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2737	Open in IMG/M
3300025664\|Ga0208849_1003627	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7276	Open in IMG/M
3300027835\|Ga0209515_10462503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	664	Open in IMG/M
3300027854\|Ga0209517_10136823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1587	Open in IMG/M
3300027905\|Ga0209415_10033848	All Organisms → cellular organisms → Bacteria	7221	Open in IMG/M
3300028800\|Ga0265338_10053819	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3596	Open in IMG/M
3300028800\|Ga0265338_10359717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	1045	Open in IMG/M
3300029911\|Ga0311361_10405901	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1427	Open in IMG/M
3300029911\|Ga0311361_11315881	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300029913\|Ga0311362_10103622	All Organisms → cellular organisms → Bacteria	3752	Open in IMG/M
3300029999\|Ga0311339_11716833	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300030041\|Ga0302274_10503573	Not Available	521	Open in IMG/M
3300030399\|Ga0311353_10463792	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1129	Open in IMG/M
3300030659\|Ga0316363_10329375	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	605	Open in IMG/M
3300030707\|Ga0310038_10427143	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	572	Open in IMG/M
3300031090\|Ga0265760_10298906	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	570	Open in IMG/M
3300031234\|Ga0302325_11922420	Not Available	734	Open in IMG/M
3300031234\|Ga0302325_13024070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	543	Open in IMG/M
3300031238\|Ga0265332_10286114	All Organisms → cellular organisms → Bacteria → PVC group	681	Open in IMG/M
3300031524\|Ga0302320_10787133	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1056	Open in IMG/M
3300031524\|Ga0302320_11001327	Not Available	887	Open in IMG/M
3300031525\|Ga0302326_10457196	Not Available	1954	Open in IMG/M
3300031576\|Ga0247727_10000176	All Organisms → cellular organisms → Bacteria	145406	Open in IMG/M
3300031576\|Ga0247727_10166415	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2093	Open in IMG/M
3300031708\|Ga0310686_109984472	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300031708\|Ga0310686_118461005	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300031788\|Ga0302319_11793969	Not Available	530	Open in IMG/M
3300031813\|Ga0316217_10001280	All Organisms → cellular organisms → Bacteria	33418	Open in IMG/M
3300031962\|Ga0307479_11481376	Not Available	636	Open in IMG/M
3300032118\|Ga0315277_10001210	All Organisms → cellular organisms → Bacteria	38168	Open in IMG/M
3300032160\|Ga0311301_12676680	Not Available	550	Open in IMG/M
3300032173\|Ga0315268_10469263	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	1238	Open in IMG/M
3300032401\|Ga0315275_10246698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1994	Open in IMG/M
3300032805\|Ga0335078_12103098	Not Available	600	Open in IMG/M
3300032892\|Ga0335081_12334840	Not Available	558	Open in IMG/M
3300032895\|Ga0335074_10238257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	2159	Open in IMG/M
3300032897\|Ga0335071_11777627	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	560	Open in IMG/M
3300033134\|Ga0335073_10143574	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	3032	Open in IMG/M
3300033402\|Ga0326728_10009748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	22898	Open in IMG/M
3300033402\|Ga0326728_10099493	All Organisms → cellular organisms → Bacteria	3524	Open in IMG/M
3300033402\|Ga0326728_10139947	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	2676	Open in IMG/M
3300033402\|Ga0326728_10439827	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300033402\|Ga0326728_10965811	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C5TDCM	595	Open in IMG/M
3300033405\|Ga0326727_10193010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2252	Open in IMG/M
3300033755\|Ga0371489_0511186	All Organisms → cellular organisms → Bacteria → PVC group	530	Open in IMG/M
3300034091\|Ga0326724_0023935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	5170	Open in IMG/M
3300034091\|Ga0326724_0669494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.43%
Host-Associated	Host-Associated	2.68%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.61%
Aquatic	Environmental → Aquatic	34.82%
Plants	Host-Associated → Plants	2.68%
Wastewater	Engineered → Wastewater	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.07%
Freshwater	Environmental → Aquatic → Freshwater	31.25%
Peat	Environmental → Terrestrial → Peat	18.75%
Sediment	Environmental → Aquatic → Sediment	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.68%
Cave	Environmental → Terrestrial → Cave	1.79%
Marine	Environmental → Aquatic → Marine	0.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.39%
Lake	Environmental → Aquatic → Freshwater → Lake	8.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.25%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.36%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.79%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.89%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.89%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	8.04%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.25%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	6.25%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.46%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.46%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	4.46%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.68%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.68%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.68%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.79%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.79%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.89%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.89%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001452	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012956	Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MG	Engineered	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020083	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental	Open in IMG/M
3300020220	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100m	Environmental	Open in IMG/M
3300020222	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300025444	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 (SPAdes)	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1058675881	3300001213	Wetland	MKRKKAQVEKPSNGTVLGAKARAECNRLTDTEREKLGDEFMKLYYGGATKPATTRRR*
JGI20203J14952_10217293	3300001452	Arctic Peat Soil	MKRKKTQVEKASAGTITGAKMRAECNGLTDVEREKLGEEFLKLYYGGNRKPATAHRR*
Ga0062389_1004185141	3300004092	Bog Forest Soil	MKRKKASPDKASNGTALAAQARAEGNKWTDAEREKLGDQFMKLYYGGETKPATTRRR*
Ga0062389_1036525252	3300004092	Bog Forest Soil	MKRKKVPVEKPSNGTVLAARARAEGNKWTDAEREKLGDEFMKLYYGGETKPVAARRR*
Ga0062388_1006439563	3300004635	Bog Forest Soil	MKRKKAPTEKASPGTLLAARARAEGNKWTDAEREKLGDQF
Ga0066704_102723882	3300005557	Soil	MKRKKPQVEKASAGTVLGARMRAEGNKLTDAERDKLGGEFLKICYGGDHKPARRR*
Ga0066704_108124851	3300005557	Soil	MKRKKAHVEKASTGTVLAARMRAENNKLTDIEREKLGEEFLKLYYGGDRKPATARRR*
Ga0070764_106119681	3300005712	Soil	MKRKKAPLSKTSNGTVLAARARAEGNTWTDAERERLGEQFMKLYYGGETKPA
Ga0074479_103494391	3300005829	Sediment (Intertidal)	EKPPNGTVLGAKARAECNRLTDTEREKLGDEFMKLYYGGEAFVEEL*
Ga0066652_1002062283	3300006046	Soil	MKRKKAQVEKESAGTVLGAKARAECNKLPDVERERLGEKFMKLYYGGNTKPATTRRR*
Ga0075522_100521083	3300006638	Arctic Peat Soil	MKRKKARLEKASSGTLLAARARAEGNKWTDAEREKLGEQFMKLFYGGEIKPAAPRRR*
Ga0066710_1003252454	3300009012	Grasslands Soil	VRIEKASVGTVLAARMRAEGNKLTDAEREKLGEEFLKLYYGGDHKSAPTRRR
Ga0066710_1023242232	3300009012	Grasslands Soil	MKRKKAQVEKASHGTMLAAKMRAEGNKWTDAQREQLGEEFLKLHYGGETTVGTMSLTPFP
Ga0066710_1035336381	3300009012	Grasslands Soil	MKRKKAHVEKATAGTVPATRMRAEGNKLPDAEREKLGEEFLKLYYGG
Ga0066709_1000971601	3300009137	Grasslands Soil	MKRKKVRIEKTSVGTVLAARMRAEGNKLTDAEREKLGEEFLKLYYGGDHKSAPTRRR*
Ga0116225_15697871	3300009524	Peatlands Soil	VKRKKAQLEKASAGALAGAKMRAECNGLTDAEREKLEEEFLKLYYGGDRKPATTRRG*
Ga0116123_11186361	3300009617	Peatland	MKRKKARLEKASTGTVLAARARADGNKWTDAQREKLGEGFMKLYYGGETKPATTRRRCSDASCS*
Ga0116114_10639741	3300009630	Peatland	MKRKKAPIEKASSGTVLAARARAEGNKWTDAEREKLGAQFMRLYYGGETKPASTPRR*
Ga0116126_12171811	3300009640	Peatland	MKRKKAPIEKASSGTVLAARARAEGNKWTDAEREKLGAQF
Ga0116121_10044154	3300009644	Peatland	MKRKKAQVEKASVGTVLAARARAEGNKWTDAEREKLGEQFMKLFKTVDQR*
Ga0116217_100648252	3300009700	Peatlands Soil	VKRKKAQLEKASAGALAGAKMRAECNGLTDAEREKLEEEFLKLYYGGDRKPATTRRP*
Ga0074044_102725971	3300010343	Bog Forest Soil	MKRKKAQIEKASPGTVLAAQARAEGNKWTDAEREKLGEQFMKLYYGGETKQATTRRR*
Ga0136847_103100084	3300010391	Freshwater Sediment	MKRKKAQVEKASAGTVLAARARAECNKLTDTEREKLGEEFLKLYYGGETKPATTRRR*
Ga0137393_114511662	3300011271	Vadose Zone Soil	MKRKKVRIEKASVGAVLAARMRAEGNKLTDAEREKLGEEFLKLYYGGDHKSAPTRRR*
Ga0137428_10942702	3300011432	Soil	MMRKNAHVEKASAGTVLAEGNKLTDAEREKLIEKFPKRYHGDE*
Ga0137432_10147583	3300011439	Soil	MKRKKAPIEKPSTGTVIAAKARAEGNKWTDAEREKLGEEFLKLFYGGQTKPATTRRR*
Ga0137383_107771832	3300012199	Vadose Zone Soil	MKRKKAQVEKGSVGTVLAARMRAEGNRLTDVDRAKLGDEFLRLYYSSR*
Ga0137374_111188971	3300012204	Vadose Zone Soil	MKRKRARPEKKTAGTVLAERMRAEANKFTDAERERLGEEFLKLYYGLQPKPTIAHHR*
Ga0137378_102134696	3300012210	Vadose Zone Soil	MKRKKAQVEKASAGTVVGARMRAEGNRLTDAEREKLGEEFLKLYYGGDHKPATTRRR*
Ga0137366_103371382	3300012354	Vadose Zone Soil	MKRKKAQVEKVSAGTVLAARAHTECDKLTDTEREKLGEEFLKLYYGGKTKPATTRRG*
Ga0137359_106425042	3300012923	Vadose Zone Soil	MKRKKPQVEKASAGTVLGARMRAEGNKLTDAERDELGGEFLKIYYGGDHKPARRR*
Ga0154020_101330343	3300012956	Active Sludge	MKRKKAQVEKASVGTVLGAKARAEGNKWTDSQREKLGGDFLKLYYGGEIKPATTRRR*
Ga0153916_113060611	3300012964	Freshwater Wetlands	MKRKKAPVEKASAGTVLAARARAECNQLTDTEREKLGGEFLKLYYGG
Ga0181539_10532803	3300014151	Bog	MKRKKAPIEKATPGTVLAARARAEGNKWTDAEREKLGEQFMKFYYGGETKPATARRR*
Ga0181524_102818832	3300014155	Bog	MKRKKAQVEKASAGTIVGAKMRAECNKLTDTERGKLGEEFLKLYYGGDLKPAPAHRR*
Ga0181521_102518611	3300014158	Bog	MKRKKAPIEKASSGTVLAARARAEGNKWTDAEREKLGAQFMRLYYGGETKPAST
Ga0181535_101287442	3300014199	Bog	MKRKNARPEKVSAGTMLAAQVRAEGNKWTDAKREKLGEQFMKLYYGGEIKPASTRRR*
Ga0182010_102739761	3300014490	Fen	MKRKKAQVEKPSVGTVLAAKARAECNRLTDGQREQLGEEFLKLYYGGATKPATTRRR*
Ga0182014_105487661	3300014491	Bog	MKRKKAQVEKPSVGTLRAAKARAESNRLTDAQRETLGEEFLKLYYGGQTKPA*
Ga0182011_109009832	3300014496	Fen	MKRKKAQVEKPSVGTVLAAKARAECNRLTDGQREQLGEEFLKLYYGGATKPATARRR*
Ga0182012_101538634	3300014499	Bog	MKRKKATVEKASSGTALAAQARAEGNKWTDAEREKLGEQFMKLYYGGETKPATKG*
Ga0182021_105389291	3300014502	Fen	KPSVGTVLAAKARAECNRLTDGQREQLGEEFLKLHYGGATKPATTRRR*
Ga0182030_108103772	3300014838	Bog	MKRTKAQLEKTSAGTVAGAKLRAEGNKLTDSQREKLGEEFLKLYYGGFPTPA
Ga0182027_102208192	3300014839	Fen	MKRRKTPLEKASTGTVLAARARAEGNKWTDTEREQLGEQFMKLYYGGETKPATTRRR*
Ga0182027_103084522	3300014839	Fen	MKRKKALVEKPSVGTLLAAKARAEGNRLTDAQRETLEEEFLKRYYGGDRGS*
Ga0187849_12397472	3300017929	Peatland	MKRKKTPIEKATPGTVLAARARAEGNKWTDAERERLGEEFMKLYYGGQTKQATTRRR
Ga0187777_111165982	3300017974	Tropical Peatland	MKRKKTQLEKASVGTVAGAKMRAEGNKFTDGEREKFGEAFLKLYYGCEPKPAATHRR
Ga0187876_10497171	3300018003	Peatland	EKPSVGTLRAAKARAESNRLTDAQRETLGEEFLKLYYGGQTKPA
Ga0187884_101768691	3300018009	Peatland	EKASSGTVLAARARAEGNKWTDAEREKLGAQFMRLYYGGETKPASTPRR
Ga0187872_102046131	3300018017	Peatland	MKRKKAPIEKASSGTVLAARARAEGNKWTDAEREKLGAQFMRLYYGGE
Ga0187864_104177011	3300018022	Peatland	RKKAQIEKASPGTVLAAQARAEGNKWTDAEREKLGEQFMKLYYGGETKQATTRRR
Ga0187867_100186574	3300018033	Peatland	MKRKKAQVEKASVGTVLAARARAEGNKWTDAEREKLGEQFMKLFKTVDQR
Ga0187867_106650872	3300018033	Peatland	MKRKKAPLEKASAGTALAARARAEGNKWTDAEREKLGEDFMKLYYGGETKPATTRRR
Ga0187875_104168573	3300018035	Peatland	APLEKASAGTALAARARAEGNKWTDAEREKLGEDFMKLYYGGETKPATTRRR
Ga0187852_14311391	3300019082	Peatland	MKRKKAQVEKPSVGTLRAAKARAESNRLTDAQRETLGEEFLKLYYGGQTKPA
Ga0181502_15253982	3300019242	Peatland	MKRKKAALVKPSAGTALAAQARAEGNNWTDAEREKLGEEFLRLYYGGETKPVATRRR
Ga0194113_103475062	3300020074	Freshwater Lake	MKRKKAHVEKASAGTVLAARMRAEGNKLPDAEREKLGEEFLKLYYGGDHKPATTRRR
Ga0194111_105760341	3300020083	Freshwater Lake	MKRKKAHVEKASAGTVLAARMRAEGNKLPDAEREKLGEEFLKLYY
Ga0194110_102848741	3300020084	Freshwater Lake	KKAHVEKASAGTVVAARMRAEGNKLPDAEREKLGEEFLKLYYGGDHKPATTRRR
Ga0194112_100405315	3300020109	Freshwater Lake	MKRKKAHVEKASAGTVLAARMRAEGNKLPDAEREKLGEKFLKLYYGGDHKPATTRRR
Ga0194119_100229955	3300020220	Freshwater Lake	MKRKKAHVEKASAGTVLAARMRAEGNKLPDAEREKLGEKFLKLYFQR
Ga0194125_100203695	3300020222	Freshwater Lake	MKRKKAHVEKASAGTVLAARMRAEGNKLPDAEREKLGEEFLKLYFQR
Ga0210388_101487743	3300021181	Soil	MKRKKAPLSKTSNGTVLAARARAEGNTWTDAERERLGEQFMKLYYGGETKPATDRRR
Ga0208189_10364602	3300025444	Peatland	MKRKKAPIEKASSGTVLAARARAEGNKWTDAEREKLGAQFMRLYYGGETKPASTPRR
Ga0208717_11174261	3300025574	Arctic Peat Soil	MKRRKAQSDKPSAGTVRAAQARAEGNHWTDAEREKLGEEFMKLYYG
Ga0208589_10110814	3300025634	Arctic Peat Soil	MKRKKARLEKASSGTLLAARTRAEGNKWTDAEREKLGEQFMKLFYGGEIKPAAPRRR
Ga0208849_10036276	3300025664	Arctic Peat Soil	VKRKKPSVEKTSPGTLLGAKMRAECNKLSDAEREKLGGEFLKLYYGGQPLPATTHRR
Ga0209515_104625031	3300027835	Groundwater	QVEKASNGTVLAAKMRAEGNKRTDAQREKLGEEFLKLHYGGETKPATTRRR
Ga0209517_101368232	3300027854	Peatlands Soil	LLAAKARAECNRLADTQREKLGEEFLKLYYGDELKPATTRRP
Ga0209415_100338486	3300027905	Peatlands Soil	VKRKKAQLEKASAGALAGAKMRAECNGLTDAEREKLEEEFLKLYYGGDRKPATTRRP
Ga0265338_100538195	3300028800	Rhizosphere	MKRKKTQVEKASAGTITGAKMRAECNGLTDVEREKLGEEFLKLYYGGNRKPATAHRR
Ga0265338_103597172	3300028800	Rhizosphere	MKRKKAQLEKASIGTVLAAQARAEGNKWTDTERDKLGDEFMKLYYGATKPATTRRR
Ga0311361_104059013	3300029911	Bog	MKRKKAQSEKVSAGTLLAAQARAEGNKWSDAEREKLGEQFMKLYYGGELKPASTRRR
Ga0311361_113158812	3300029911	Bog	MKRKQMKSRKVSAGTLLAAQTRSEGNTWSGVEREKLGEQFMKFYYCSKIRPASTGRRFE
Ga0311362_101036223	3300029913	Bog	MKRKKARSEKLSAGTLLAAQVRAEGNKWSDAEREKLGEQFMKLYYGGALKPASTRRR
Ga0311339_117168332	3300029999	Palsa	MKRKKAALEKASTGTALAARARAEGNKWTDAEREKLGEQFMKLYDGGETKPASTRRR
Ga0302274_105035732	3300030041	Bog	MNRKKAQSEKVSAGTLLAAQARAEGNKWSDAEREKLGEQFMKLYYGGELKPASTRRR
Ga0311353_104637922	3300030399	Palsa	MKHKKAPPAKVSTGTVLAARARAEGNKWTDAEREKLGAQFMKLYYGGETKPTTTRRR
Ga0316363_103293751	3300030659	Peatlands Soil	EKASAGALAGAKMRAECNGLTDAEREKLEEEFLKLYYGGDRKPATTRRP
Ga0310038_104271431	3300030707	Peatlands Soil	VKRKKAQVEKASNGTILGAKLRAECNRLTDVEREKLGEEFLKLYYGGEHKPATTR
Ga0265760_102989063	3300031090	Soil	MKRKKAPPEKASAGTVLAARARSEGNKWTDAEREKLGEQFMKLYYGGETKPATTRRASI
Ga0302325_119224202	3300031234	Palsa	MKRKKVPLEKASTGTVLAARARAEGNKWTDAEREKLGEQFMKLYYGGETKPATTRRR
Ga0302325_130240702	3300031234	Palsa	MKRKKAPIEKVSAGTALAARARAEGNKWSDQEREKLGEQFMKLYYGGEAKPATARRR
Ga0265332_102861142	3300031238	Rhizosphere	MKRKKSQAERVSSGTVLAARLRDEGNKWTDAEREKLGEGFLKLYYGGKSKPAAARRA
Ga0302320_107871332	3300031524	Bog	MKRKKAQAEKVSDGTVVAAKMRADANKLADPDREKLGEEFLKLYYGGELKPASTHRR
Ga0302320_110013272	3300031524	Bog	MKRTKAQLEKTSAGTVAGAKLRAEGNKLTDSQREKLGEEFLKLYYGGFPTPATTSPTRARRLLKMCP
Ga0302326_104571964	3300031525	Palsa	MKRKKVPLEKASTGTVLAARARAEGNKWTDAEREKLGEQFMKAYYGGETKPATTRRR
Ga0247727_10000176119	3300031576	Biofilm	MKRKKAQVEKPSNGTVLAAKARAECNKLTDAERERLGEEFLKLYYGGATKPATTRRR
Ga0247727_101664152	3300031576	Biofilm	MKRRKAQVEKASAGTVLAARARAEGNKWTDAEREKLGEEFLKLYYGGETKPATTRRR
Ga0310686_1099844722	3300031708	Soil	MKRKKAPIEKASAGTMQAARARAEGNKWADAEREKLGVQFMKLYQR
Ga0310686_1184610052	3300031708	Soil	MKRKKAPPEKASAGTVLAARARAEGNKWTDAEREKLGEQFMKFFHAFKPQWP
Ga0302319_117939692	3300031788	Bog	MKRKKARSEQASAGTVLAAQARAKGNKWTDAEREKLGEQFMKLYYGENKTVPAR
Ga0316217_1000128022	3300031813	Freshwater	MKRKKAQLEKVSAGTLVGAKLRADGNKLTDSQREKLGEEFLRLYYGGFSTPATTHRR
Ga0307479_114813762	3300031962	Hardwood Forest Soil	MKRKKPQPEKASAGTTLGARARAEGNKWTDAEREKLGDQFMKLYYGGETKPASTRRR
Ga0315277_100012109	3300032118	Sediment	MRRKKAHVEKPSHGTVLAARARAEGNKLTDADRERLGEEFLKLFYGGELKPGTTRRR
Ga0311301_126766802	3300032160	Peatlands Soil	MKRKKAQDEKPSAGTLLAAKARAECNRLADTQREKLGEEFLKLYYGDELKPATTRRR
Ga0315268_104692632	3300032173	Sediment	MKRKKAHVEKPSHGTVLAARARAEGNKLTDAERERLGEQFLKLFYGGELKPATARRR
Ga0315275_102466982	3300032401	Sediment	MKRKKAQVEKPSVGTVLAAKARAECNRLTDAQREELGEAFLKLYYGGETKPAPIRRR
Ga0335078_121030982	3300032805	Soil	MKRKKAQVEKASAGTIVGARMRAEGNKLTDTERGKLGEEFLKLYYGGDLKPAPAHRR
Ga0335081_123348403	3300032892	Soil	MKRKKAPVEKPSPGTVLGAKMRAEGNKLTDAQREKLGEEF
Ga0335074_102382575	3300032895	Soil	MKQKKARTEKASAGTALGAKARAESNRLADTDREKLGEEFMKLYYGGSHKPATTHRR
Ga0335071_117776272	3300032897	Soil	TVAGAKMRAESNKFTDGERERLGEAFLKLYYGCEPKPAATHRR
Ga0335073_101435741	3300033134	Soil	MKRKKAQVEKASAGAILGARMRAEGNKLTDAERGKLGEEFLKLYYGGDLKPAPTHRR
Ga0326728_1000974810	3300033402	Peat Soil	MKRKRAQIEKASTGTVLAARARAEGNKWTDAEREKLGEQFMKLYYGGETKPATTRRR
Ga0326728_100994934	3300033402	Peat Soil	MKRKKAQFEKASPGTVLAARARAEGNKWTDAEREKLGEQFMKLYYGGETKPATTRRR
Ga0326728_101399473	3300033402	Peat Soil	MKRKKARIEKASPGTVLAARARAEGNKWTDAEREKLGEQFMKLYYGGETKQATTRRR
Ga0326728_104398272	3300033402	Peat Soil	MKRKKAPLEKASTGTVLAARARAEGNKWTDAEREQLGEQFMKLYYGGETKPATTRRR
Ga0326728_109658112	3300033402	Peat Soil	PQVEKVSPGTILGAKMRAECDKLSDAEREKLGEEFLKLYYGGQPSPATTHRR
Ga0326727_101930103	3300033405	Peat Soil	MKRKKAQVEKASVGTMLAARARAEGNKWTDAEREKLGE
Ga0371489_0511186_403_528	3300033755	Peat Soil	MKRKKAQRETASAGTVLAAQARAEGNKWTDAKREKLGEEFMK
Ga0326724_0023935_827_1000	3300034091	Peat Soil	MKRKKAQIEKASAGTVLAARARAEGNKWTDAEREKLGEQFMKLYYGGETKPATTRRR
Ga0326724_0669494_89_205	3300034091	Peat Soil	MKRKKAQVEKASVGTVLAARARAEGNKWTDAEREKLGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084160

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences