Basic Information | |
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Family ID | F084116 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 52 residues |
Representative Sequence | MKKNNINMYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK |
Number of Associated Samples | 70 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 60.71 % |
% of genes near scaffold ends (potentially truncated) | 16.96 % |
% of genes from short scaffolds (< 2000 bps) | 67.86 % |
Associated GOLD sequencing projects | 60 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.41 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (52.679 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (30.357 % of family members) |
Environment Ontology (ENVO) | Unclassified (83.036 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (92.857 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 30.77% β-sheet: 0.00% Coil/Unstructured: 69.23% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
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Visualization |
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All Organisms unclassified Hyphomonas Unclassified |
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Visualization |
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Marine Surface Seawater Aqueous Seawater Marine Salt Marsh Marine Seawater Marine Sediment Seawater Deep Subsurface Macroalgal Surface |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
BBAY92_100258414 | 3300000947 | Macroalgal Surface | MKKSNINMYMVPIGAIYKVKGFWSDWLKYKKPIPKKITPHLLNNLLGGYNATFYKRNKK* |
GOS2228_10087903 | 3300001948 | Marine | MKKYNINMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPQLLNNLLGGYNDSFYKRNKR* |
KVWGV2_105649662 | 3300002242 | Marine Sediment | MYQVPIKKIYRVKQYWTDWLKYRLPIPKNITPKILANLIGGYK* |
JGI25127J35165_10379811 | 3300002482 | Marine | MRKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKNITPHKLKNLLGGYK* |
JGI25132J35274_10936941 | 3300002483 | Marine | MKKSPINMYRIPIEKICKVKSYWNNWLKYKKPIPNNITPHLLNNLLGGYNATFYKRNKK* |
Ga0098038_10132065 | 3300006735 | Marine | MREYKINMYQVPITKIYRVKQYWTDWIKYRLPIPKKITPYKLKNLLGGYK* |
Ga0098038_10545721 | 3300006735 | Marine | MKKNNINMYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPYILRNILGGYK* |
Ga0098038_12173172 | 3300006735 | Marine | MRHNKINMYQVPIKQIYRTKQYWTDWLKYRLPIPKKITPYKLKNLLGGYK* |
Ga0098038_12203042 | 3300006735 | Marine | MRKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKKVTPFRLKNLLGCYK* |
Ga0098038_12703502 | 3300006735 | Marine | MKKDKINMYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPIILKNLLGGYK* |
Ga0098037_11323153 | 3300006737 | Marine | MKKDNINLYKVPIIKIYRTKQYWTDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0098042_10394325 | 3300006749 | Marine | MKKNNLNIYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0098042_10465342 | 3300006749 | Marine | MKKYNINMYQVPIKKIYRIKQYWSDWLKYRLPIPKKITPRILTNLLGGYK* |
Ga0098042_10591492 | 3300006749 | Marine | MRKYNINIYQVPIKKIYRTKQYWSDWLKYRLPIPKKVTPFRLKNLLGCYK* |
Ga0098042_11175962 | 3300006749 | Marine | MKKYKINMYQVPITKIYRTKQYWTDWLKYRLPIPKKITPYLLRNLLGGYK* |
Ga0098042_11327222 | 3300006749 | Marine | MKKDNINLYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPYLLKNLLGGYK* |
Ga0098042_11556931 | 3300006749 | Marine | MKKDNINMYQVPIKKIYRIKQYWSDWLKYRLPIPKKVTPFRLKNLLGCYK* |
Ga0098048_12041032 | 3300006752 | Marine | MKKDKINMYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPYLLRNLLGGYK* |
Ga0070749_100232312 | 3300006802 | Aqueous | MKKSNINMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPHTLNNLLGGYNDSFYKRNKR* |
Ga0070754_100902754 | 3300006810 | Aqueous | MKKYNIKMYMVPIGTIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNDSFYKRNKR* |
Ga0070754_103131112 | 3300006810 | Aqueous | MKKSNINMYVVPIGAIYKVKTYWSDWLKYKLPIPKTITPHLLNNLLGGYNVTFYKRNKK* |
Ga0075476_102884592 | 3300006867 | Aqueous | MKKDNINLYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPYILSNLLGVYK* |
Ga0070750_101298635 | 3300006916 | Aqueous | MKKYNINMYMVPIGAIYKIKTHWSDWLKYKLPIPKNITPHLLNNLLGGYNATFYKRNKK* |
Ga0098060_11727622 | 3300006921 | Marine | MKKDKINMYQVPIIKIYKTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0098041_10233292 | 3300006928 | Marine | MKKNNINMYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPYLLRNLLGGYK* |
Ga0098041_10899363 | 3300006928 | Marine | MKKNNLNMYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0098041_11331464 | 3300006928 | Marine | MKKDNINIYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0098041_12443201 | 3300006928 | Marine | YKINMYQVPITKIYRVKQYWSDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0098036_10138032 | 3300006929 | Marine | MKKDNINLYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0070745_10401936 | 3300007344 | Aqueous | MKKYNIKMYMVPIGTIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNDSFYK |
Ga0070745_11716514 | 3300007344 | Aqueous | MKKYNINMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNDSFYK |
Ga0099851_12503113 | 3300007538 | Aqueous | MYMVPIGVIYKIKTHWSDWLKYKLPIPKNITPHLLNNLLGGYNATFYKRNKK* |
Ga0099847_10882363 | 3300007540 | Aqueous | MKKYNIKMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNATFYKRNKK* |
Ga0099846_10210673 | 3300007542 | Aqueous | MKKYNINMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNDSFYKRNKR* |
Ga0114932_102815363 | 3300009481 | Deep Subsurface | MKKNNLNIYQVPIKQIYRTKQYWSDWLKYKLPIPKKITPYKLKNLLGGYK*LSPGSTMAAI* |
Ga0114933_104360133 | 3300009703 | Deep Subsurface | MRHNRINMYQVPIKQIYRTKQYWSDWLKYRLPIPKKITPYKL |
Ga0114933_104907251 | 3300009703 | Deep Subsurface | KIYRTKQYWSDWLKYRLSIPKNITPKILANLIGGYK* |
Ga0114933_108487521 | 3300009703 | Deep Subsurface | MKKNNLNIYQVPIKQIYRTKQYWSDWLKYRLPIPKKITPYKLRNILGGYK*EKY* |
Ga0098043_11230482 | 3300010148 | Marine | MKKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKKITPRILTNLLGGYK* |
Ga0098043_11242302 | 3300010148 | Marine | MRKSPINMYRIPIEKICKVKSYWNNWLKYKQPIPNNITPHLLNNLLGGYNATFYKRNKK* |
Ga0098043_12049202 | 3300010148 | Marine | TMKKDNINMYQVPIKKIYRIKQYWSDWLKYRLPIPKKVTPHILKNLLGGYK* |
Ga0098043_12227141 | 3300010148 | Marine | LLSLSFRHCTTIYRLGDHMREYKINMYQVPITKIYRVKQYWSDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0114934_101655363 | 3300011013 | Deep Subsurface | MRHNRINMYQVPIKQIYRTKQYWSDWLKYRLPIPKKITPYKLRNILGGY |
Ga0160423_101543952 | 3300012920 | Surface Seawater | MKKDNLNMYQVPIKNIYRVKQYWTDWLKYRLPIPKKITPYILSNLLGVYK* |
Ga0160423_101884743 | 3300012920 | Surface Seawater | MKKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKKVTPFRLKNLLGCYK* |
Ga0160423_109326112 | 3300012920 | Surface Seawater | MKKDNINMYQVPITKIYRVKQYWTDWLKYRLPIPKKITPVILKNLLGGYK* |
Ga0163111_102794501 | 3300012954 | Surface Seawater | TTIYRLGDHMREYKINMYQVPIIKIYRTKQYWNDWLKYRLPIPKKITPYLLKNILGGYK* |
Ga0181387_10234542 | 3300017709 | Seawater | MMKEYNINMYQVPIKKIYRVKQYWTDWLKYRLPIPKNITPKILANLIGGYK |
Ga0181412_10126092 | 3300017714 | Seawater | MKKYNINMYQVPIKKIYRIKQYWSDWLKYRLPIPKKVTPFILKNLLGCYK |
Ga0181383_11337932 | 3300017720 | Seawater | MKEYNINMYQVPIKKIYRVKQYWTDWLKYRLPIPKNITPKILANLIGGYK |
Ga0181419_10222924 | 3300017728 | Seawater | MKKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGSYK |
Ga0181415_10128454 | 3300017732 | Seawater | MYQVPIKKIYRIKQYWSDWLKYRLPIPKKVTPFILKNLLGCYK |
Ga0181426_10017092 | 3300017733 | Seawater | MYQVPIKKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGSYK |
Ga0181411_11570441 | 3300017755 | Seawater | KQIYRTKQYWTDWLKYRQPIPKKITPVILKNLLGSYK |
Ga0181382_10082423 | 3300017756 | Seawater | MKEYNINMYQVPIKKIYRVKQYWTDWLKYRLPIPKKITPKILANLIGGYK |
Ga0181385_10327934 | 3300017764 | Seawater | MKEYNINMYQVPIKKIYRVKQYWTDWLKYRLPIPKNITPKILANLNGGYK |
Ga0181385_11470583 | 3300017764 | Seawater | MMKEYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKNITPKILANLIGGYK |
Ga0181553_100737576 | 3300018416 | Salt Marsh | MRKSNINMYMVPIGAIYKVKGFWSDWLKYKLPIPKTITPHLLNNLLGGYNATFYRRNKK |
Ga0181553_101948521 | 3300018416 | Salt Marsh | KSNINMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNATFYKRNKK |
Ga0181568_105036193 | 3300018428 | Salt Marsh | MKKSKINMYMVPIGAIYKVKTHWSDWLKYKLPIPKNITPHLLNNLLGGYNATFYKRNK |
Ga0181568_106137304 | 3300018428 | Salt Marsh | MKKSKINMYMVPIGAIYKVKTHWSDWLKYKLPIPKNITPHLLNNLLGGYNATFYKRNKK |
Ga0182059_10594762 | 3300019272 | Salt Marsh | MRQYNINMYQVPIKKIYRIKQYWTDWLKYRLPIPKKITPRILTN |
Ga0211666_100252873 | 3300020392 | Marine | MKKDNINMYQVPIKKIYRVKQYWTDWLKYKLPIPKKITPYKLRNLLGGYK |
Ga0211636_100338034 | 3300020400 | Marine | MYQVPIKKIYRVKQYWTDWLKYRLPIPKKITPKIIANLIGSYK |
Ga0211659_100556843 | 3300020404 | Marine | MKKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKNITPHKLKNLLGGYK |
Ga0211523_102199703 | 3300020414 | Marine | KIYRVKQYWSDWLKYRLPIPKKITPYILKNLLGGYK |
Ga0211708_100562852 | 3300020436 | Marine | MKKDNINMYQVPILKIYRIKQHWFDWLKYRIPIPKKITPKIIANLIGGYK |
Ga0211558_100362884 | 3300020439 | Marine | MKKANINMYRVPIRKIYKVKSIWKDWLKYRSPIPKYITPHLLNNLLGGYSGHKTRT |
Ga0211558_100419033 | 3300020439 | Marine | MREYKINMYKVPITKIYKVKKYWSDWLKYKLPIPKKITPVILKNLLGGYK |
Ga0211558_100473456 | 3300020439 | Marine | MKKYNINMYQVPIKKIYRIKQYWSDWLKYRLPIPKKITPGILTNLLGGYK |
Ga0211558_101244463 | 3300020439 | Marine | MKKDKINMYEVPIIKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK |
Ga0211518_102595741 | 3300020440 | Marine | MKKNNLNIYQVPIKQIYRTKQYWTDWLKYRLPIPKKITPYKLRNILGGYKXLSPGSTMAA |
Ga0211574_100135771 | 3300020446 | Marine | MKKDNINLYQVPIIKIYRVKQYWSDWLKYRLPIPKKITPYKLKNLLGGYK |
Ga0211676_104169563 | 3300020463 | Marine | MKKDNLNIYQVPIKQIYRTKQYWYDWLKYRLPIPKKITPYKLRNLLGGYK |
Ga0213859_1000172913 | 3300021364 | Seawater | MKKSNINMYMVPIGNIYKVKTYWSDWLKYKLPIPKKITPHLLNNLLGGYNATFYRRNKK |
Ga0213860_100079735 | 3300021368 | Seawater | MKKSNINMYMVPIGAIYKIKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNATFYNRNKK |
Ga0212029_10379412 | 3300022063 | Aqueous | MKKSNINMYVVPIGAIYKVKTYWSDWLKYKLPIPKTITPHLLNNLLGGYNVTFYKRNKK |
Ga0224906_10188612 | 3300022074 | Seawater | MRKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGSYK |
Ga0196899_10147841 | 3300022187 | Aqueous | MKKDNINLYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPYILSNLLGVYK |
Ga0255754_100389311 | 3300022939 | Salt Marsh | KSLNMRQYNINMYQVPIKKIYRIKQYWTDWLKYRLPIPKKITPRILTNLLGGYK |
Ga0209992_100757882 | 3300024344 | Deep Subsurface | MKKNNLNIYQVPIKQIYRTKQYWSDWLKYKLPIPKKITPYKLKNLLGGYK |
Ga0208159_10109835 | 3300025101 | Marine | MKKNNLNIYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK |
Ga0208159_10170935 | 3300025101 | Marine | MKKDNINMYQVPIKKIYRIKQYWSDWLKYRLPIPKKVTPFRLKNLLGCYK |
Ga0208159_10209183 | 3300025101 | Marine | MKKYKINMYQVPITKIYRTKQYWTDWLKYRLPIPKKITPYLLRNLLGGYK |
Ga0208159_10555873 | 3300025101 | Marine | MKKDNINLYKVPIIKIYRTKQYWTDWLKYRLPIPKKITPVILKNLLGGYK |
Ga0208158_10210854 | 3300025110 | Marine | MKKNNINMYQVPIIKIYRTKQYWSDWLKYRLPIPKKITPVILKNLLGGYK |
Ga0209348_10596822 | 3300025127 | Marine | MKKSPINMYRIPIEKICKVKSYWNNWLKYKKPIPNNITPHLLNNLLGGYNATFYKRNKK |
Ga0209232_10312803 | 3300025132 | Marine | MKKNNLNIYQVPIKQIYRTKQYWTDWLKYRLPIPKKITPVILKNLLGGYK |
Ga0209232_11212273 | 3300025132 | Marine | NVWGLLMKKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKNITPHKLKNLLGGYK |
Ga0209645_10067134 | 3300025151 | Marine | MYQVPITKIYRTKQYWTDWLKYRLPIPKKITPYKLKNLLGGYK |
Ga0208161_11235792 | 3300025646 | Aqueous | MKKYNINMYMVPIGAIYKIKTHWSDWLKYKLPIPKNITPHLLNNLLGGYNATFYKRNKK |
Ga0208160_11764712 | 3300025647 | Aqueous | MKKYNINMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNDSFYKRNKR |
Ga0208795_10404194 | 3300025655 | Aqueous | MKKYNINMYMVPIGAIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNATFYKRNKK |
Ga0208767_10272108 | 3300025769 | Aqueous | MKKYNINMYMVPIGAIYKIKTHWSDWLKYKLPIPKKITPHTLNNLLGGYNDSFYKRNKR |
Ga0208645_102660910 | 3300025853 | Aqueous | MKKYNIKMYMVPIGTIYKVKTHWSDWLKYKLPIPKKITPHLLNNLLGGYNDSFYKRNKR |
Ga0256382_11197911 | 3300028022 | Seawater | MKKNNLNIYQVPITKIYRTKQYWTDWLKYRLPIPKKITPYKLRNILGGYKXLSPGSTMAA |
Ga0183683_10082413 | 3300029309 | Marine | MRKYNINMYQVPIKKIYRIKQYWSDWLKYRLSIPKKITPAILSNLLGVYK |
Ga0183683_10089234 | 3300029309 | Marine | MREYRINMYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPYILSNLLGVYK |
Ga0183683_10110723 | 3300029309 | Marine | MKKDNINLYQVPITKIYRTKKYWNDWLKYRLPIPKKITPYILSNLLGVYK |
Ga0183683_10117414 | 3300029309 | Marine | MKKYSINMYQVPIKKIYRIKQYWSDWLKYRLPIPKKITPRILTNLLGGYK |
Ga0183683_10166171 | 3300029309 | Marine | MKKDNINMYQVPIIKIYRTKQYWTDWLKYRLPIPKKITPVILKNLLGGYK |
Ga0183683_10388012 | 3300029309 | Marine | MRKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKNITPHKLKNLLGGYK |
Ga0185543_10296251 | 3300029318 | Marine | MRKNNINMYQVPITKIYRVKQYWTDWLKYRLPIPKKITPYILKNLLGGY |
Ga0183748_10024818 | 3300029319 | Marine | MKKYNINMYQVPIKKIYRIKQYWTDWLKYRLPIPKKITPRILTNLLGGYK |
Ga0183748_10114159 | 3300029319 | Marine | MKKNNINMYQVPIKNIYRVKQYWTDWLKYRLPIPKKITPAILSNLLGVYK |
Ga0183748_10168163 | 3300029319 | Marine | MKKDNINMYQLPILKIYRIKQHWYDWLKYRIPIPKNITPKIIANLIGGYK |
Ga0183748_10189226 | 3300029319 | Marine | MREYKINMYQVPIIKIYRVKQYWSDWLKYRLPIPKKITPYILKNLLGGYK |
Ga0183748_10430202 | 3300029319 | Marine | MRKYNINMYQVPIKKIYRTKQYWSDWLKYRLPIPKKVTPFKLKNLLGCYK |
Ga0183755_10160274 | 3300029448 | Marine | MKKNNLNIYQVPITKIYRTKQYWSDWLKYKLPIPKKITPYKLRNILGGYK |
Ga0183757_10059252 | 3300029787 | Marine | MYQVPIKQIYRTKQYWTDWLKYRLPIPKKITPYKLKNILGGYK |
Ga0183757_10124454 | 3300029787 | Marine | MNKYNINMYQVPIKKIYRTKQYWSDWLKYRLSIPKNITPKILANLIGGYK |
Ga0183757_10166453 | 3300029787 | Marine | MKKSNINMYQVPIIKIYRTKKYWSDWLKYRLPIPKNITPVILKNLLGGYK |
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