NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F084108

Metagenome / Metatranscriptome Family F084108

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084108
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 43 residues
Representative Sequence MNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Number of Associated Samples 86
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 59.82 %
% of genes from short scaffolds (< 2000 bps) 83.04 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (89.286 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(74.107 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.036 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 86.36%    β-sheet: 0.00%    Coil/Unstructured: 13.64%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF06067DUF932 5.36
PF02562PhoH 2.68

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG1702Phosphate starvation-inducible protein PhoH, predicted ATPaseSignal transduction mechanisms [T] 2.68
COG1875Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domainsGeneral function prediction only [R] 2.68


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A89.29 %
All OrganismsrootAll Organisms10.71 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10182246Not Available688Open in IMG/M
3300000149|LPaug09P1610mDRAFT_c1001266All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium4314Open in IMG/M
3300001460|JGI24003J15210_10176492Not Available521Open in IMG/M
3300001472|JGI24004J15324_10154768Not Available526Open in IMG/M
3300003478|JGI26238J51125_1083214Not Available615Open in IMG/M
3300003580|JGI26260J51721_1012781Not Available2072Open in IMG/M
3300003580|JGI26260J51721_1018995Not Available1465Open in IMG/M
3300004097|Ga0055584_100920251Not Available915Open in IMG/M
3300004457|Ga0066224_1115968Not Available1203Open in IMG/M
3300005239|Ga0073579_1609386Not Available759Open in IMG/M
3300005838|Ga0008649_10267017Not Available647Open in IMG/M
3300006029|Ga0075466_1065433Not Available1039Open in IMG/M
3300006735|Ga0098038_1076156Not Available1181Open in IMG/M
3300006735|Ga0098038_1204360Not Available638Open in IMG/M
3300006752|Ga0098048_1050905Not Available1302Open in IMG/M
3300006789|Ga0098054_1081344Not Available1221Open in IMG/M
3300006793|Ga0098055_1077925Not Available1306Open in IMG/M
3300006793|Ga0098055_1092222Not Available1187Open in IMG/M
3300006793|Ga0098055_1294307Not Available607Open in IMG/M
3300006924|Ga0098051_1025327Not Available1700Open in IMG/M
3300006925|Ga0098050_1007841Not Available3201Open in IMG/M
3300007551|Ga0102881_1168058Not Available606Open in IMG/M
3300007665|Ga0102908_1097799Not Available591Open in IMG/M
3300007681|Ga0102824_1172977Not Available569Open in IMG/M
3300007992|Ga0105748_10131432Not Available1017Open in IMG/M
3300007992|Ga0105748_10191973Not Available847Open in IMG/M
3300009024|Ga0102811_1175250Not Available802Open in IMG/M
3300009024|Ga0102811_1361149Not Available547Open in IMG/M
3300009026|Ga0102829_1331648Not Available510Open in IMG/M
3300009054|Ga0102826_1135348Not Available586Open in IMG/M
3300009086|Ga0102812_10083852Not Available1755Open in IMG/M
3300009193|Ga0115551_1074134Not Available1626Open in IMG/M
3300009426|Ga0115547_1258540Not Available543Open in IMG/M
3300009433|Ga0115545_1031260Not Available2137Open in IMG/M
3300009606|Ga0115102_10343138Not Available670Open in IMG/M
3300010150|Ga0098056_1020795All Organisms → Viruses → Predicted Viral2339Open in IMG/M
3300010150|Ga0098056_1060871Not Available1301Open in IMG/M
3300017709|Ga0181387_1039019Not Available938Open in IMG/M
3300017709|Ga0181387_1073814Not Available687Open in IMG/M
3300017710|Ga0181403_1064178Not Available765Open in IMG/M
3300017710|Ga0181403_1081984Not Available671Open in IMG/M
3300017713|Ga0181391_1032630Not Available1265Open in IMG/M
3300017717|Ga0181404_1141493Not Available582Open in IMG/M
3300017724|Ga0181388_1088136Not Available739Open in IMG/M
3300017731|Ga0181416_1099645Not Available693Open in IMG/M
3300017733|Ga0181426_1036567Not Available968Open in IMG/M
3300017743|Ga0181402_1027666Not Available1590Open in IMG/M
3300017748|Ga0181393_1113903Not Available689Open in IMG/M
3300017749|Ga0181392_1069434Not Available1067Open in IMG/M
3300017750|Ga0181405_1048778Not Available1118Open in IMG/M
3300017753|Ga0181407_1037346Not Available1296Open in IMG/M
3300017753|Ga0181407_1077197Not Available852Open in IMG/M
3300017753|Ga0181407_1110429Not Available689Open in IMG/M
3300017756|Ga0181382_1057294Not Available1111Open in IMG/M
3300017759|Ga0181414_1111422Not Available719Open in IMG/M
3300017760|Ga0181408_1126348Not Available661Open in IMG/M
3300017763|Ga0181410_1101346Not Available834Open in IMG/M
3300017767|Ga0181406_1083027Not Available975Open in IMG/M
3300017767|Ga0181406_1122508Not Available784Open in IMG/M
3300017772|Ga0181430_1028422Not Available1800Open in IMG/M
3300017782|Ga0181380_1239250Not Available603Open in IMG/M
3300020169|Ga0206127_1268912Not Available581Open in IMG/M
3300020347|Ga0211504_1009678All Organisms → Viruses → Predicted Viral2946Open in IMG/M
3300020352|Ga0211505_1071043Not Available840Open in IMG/M
3300020352|Ga0211505_1086712Not Available750Open in IMG/M
3300020385|Ga0211677_10017955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium3599Open in IMG/M
3300020385|Ga0211677_10150401Not Available988Open in IMG/M
3300020385|Ga0211677_10388311Not Available544Open in IMG/M
3300020438|Ga0211576_10018575All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium4243Open in IMG/M
3300021185|Ga0206682_10156579Not Available1069Open in IMG/M
3300021185|Ga0206682_10422449Not Available560Open in IMG/M
3300021335|Ga0213867_1293408Not Available515Open in IMG/M
3300021347|Ga0213862_10023655Not Available2284Open in IMG/M
3300021347|Ga0213862_10194776Not Available713Open in IMG/M
3300021371|Ga0213863_10002226All Organisms → cellular organisms → Bacteria13860Open in IMG/M
3300021957|Ga0222717_10015831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium5124Open in IMG/M
3300021957|Ga0222717_10018425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium4708Open in IMG/M
3300021957|Ga0222717_10413367Not Available743Open in IMG/M
3300021957|Ga0222717_10457782Not Available694Open in IMG/M
(restricted) 3300023109|Ga0233432_10114713Not Available1483Open in IMG/M
(restricted) 3300023109|Ga0233432_10266475Not Available810Open in IMG/M
(restricted) 3300023109|Ga0233432_10459938Not Available541Open in IMG/M
(restricted) 3300023112|Ga0233411_10312066Not Available529Open in IMG/M
(restricted) 3300023210|Ga0233412_10044467Not Available1798Open in IMG/M
(restricted) 3300023210|Ga0233412_10308172Not Available700Open in IMG/M
(restricted) 3300023276|Ga0233410_10052898Not Available1216Open in IMG/M
(restricted) 3300023276|Ga0233410_10265113Not Available557Open in IMG/M
(restricted) 3300024059|Ga0255040_10419988Not Available568Open in IMG/M
(restricted) 3300024255|Ga0233438_10080111Not Available1546Open in IMG/M
(restricted) 3300024259|Ga0233437_1054091Not Available2315Open in IMG/M
(restricted) 3300024261|Ga0233439_10093259Not Available1563Open in IMG/M
3300024346|Ga0244775_10107739All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium2366Open in IMG/M
3300024413|Ga0233393_1095828Not Available645Open in IMG/M
3300024417|Ga0228650_1173804Not Available550Open in IMG/M
(restricted) 3300024519|Ga0255046_10111273Not Available1177Open in IMG/M
(restricted) 3300024528|Ga0255045_10059731Not Available1299Open in IMG/M
(restricted) 3300024529|Ga0255044_10413387Not Available564Open in IMG/M
3300025070|Ga0208667_1003161Not Available5100Open in IMG/M
3300025108|Ga0208793_1132724Not Available671Open in IMG/M
3300025120|Ga0209535_1001410All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.16396Open in IMG/M
3300025120|Ga0209535_1009450Not Available5596Open in IMG/M
3300025120|Ga0209535_1044634All Organisms → Viruses → Predicted Viral1945Open in IMG/M
3300025645|Ga0208643_1021112Not Available2275Open in IMG/M
3300027298|Ga0208970_1073748Not Available555Open in IMG/M
3300027416|Ga0207994_1006012All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium2481Open in IMG/M
3300027751|Ga0208304_10141290Not Available890Open in IMG/M
(restricted) 3300027996|Ga0233413_10094494Not Available1199Open in IMG/M
(restricted) 3300028045|Ga0233414_10414837Not Available627Open in IMG/M
3300028135|Ga0228606_1073168Not Available896Open in IMG/M
3300028418|Ga0228615_1062675Not Available1089Open in IMG/M
3300032088|Ga0315321_10527415Not Available711Open in IMG/M
3300032274|Ga0316203_1069348Not Available1005Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater25.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine16.07%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater11.61%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine8.04%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater7.14%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine7.14%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.46%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.57%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.68%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.68%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.79%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.79%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.79%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.89%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.89%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.89%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.89%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.89%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.89%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000149Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10mEnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005838Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNAEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007551Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3EnvironmentalOpen in IMG/M
3300007665Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3EnvironmentalOpen in IMG/M
3300007681Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753EnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300009024Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009054Estuarine microbial communities from the Columbia River estuary - metaG S.737EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009606Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020352Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024259 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024413Seawater microbial communities from Monterey Bay, California, United States - 21DEnvironmentalOpen in IMG/M
3300024417Seawater microbial communities from Monterey Bay, California, United States - 62DEnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300024528 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_23EnvironmentalOpen in IMG/M
3300024529 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300027298Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes)EnvironmentalOpen in IMG/M
3300027416Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300028135Seawater microbial communities from Monterey Bay, California, United States - 7DEnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1018224613300000116MarineMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNS
LPaug09P1610mDRAFT_100126633300000149MarineMNTILTITGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN*
JGI24003J15210_1017649223300001460MarineMNTILTISGVIFTLVIYGNLEMLDHSEDLEKEIKNSIDLDYLFD*
JGI24004J15324_1015476823300001472MarineMNTILTIAGVIFTLVIYGNLEMLDHSEDLEKEIKNSIDLNYLFK*
JGI26238J51125_108321413300003478MarineLTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN*
JGI26260J51721_101278133300003580MarineMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN*
JGI26260J51721_101899523300003580MarineMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN*
Ga0055584_10092025123300004097Pelagic MarineMNSILTIAGVIFTLVIAGNLEMLDHSQDLEKDLQNSIDLDYLFN*
Ga0066224_111596843300004457MarineKPLSNMNSILTIAGVIFTLVIAGNLEMIDHSQDLEKEIKNSIDLNHLFN*
Ga0073579_160938623300005239MarineMNTILTISGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN*
Ga0008649_1026701713300005838MarineSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN*
Ga0075466_106543343300006029AqueousILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN*
Ga0098038_107615643300006735MarineMNSILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLFN*
Ga0098038_120436023300006735MarineTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNYLFN*
Ga0098048_105090533300006752MarineMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNYLFN*
Ga0098054_108134413300006789MarineLTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN*
Ga0098055_107792523300006793MarineMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLFN*
Ga0098055_109222253300006793MarineVIFTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLFN*
Ga0098055_129430713300006793MarineMNSILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQKSI
Ga0098051_102532723300006924MarineMNSILTIAGVIFTLVIAGNLEMLDHSQDLEKDLQNSLDLDYLFD*
Ga0098050_100784113300006925MarineMNSILTIAGVIYTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLFN*
Ga0102881_116805823300007551EstuarineMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN*
Ga0102908_109779923300007665EstuarineLSATRSPNSSSKPPSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0102824_117297733300007681EstuarineMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLF
Ga0105748_1013143213300007992Estuary WaterGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN*
Ga0105748_1019197323300007992Estuary WaterMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQNSIDLNYLFN*
Ga0102811_117525043300009024EstuarineMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKN
Ga0102811_136114923300009024EstuarineAGVIFTLVIYGNLEMIDHSEDLEKEIKNSIDLNHLFN*
Ga0102829_133164823300009026EstuarineMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN*
Ga0102826_113534823300009054EstuarineLSATRSPSSSSTPLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0102812_1008385253300009086EstuarineSSSKPPSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN*
Ga0115551_107413443300009193Pelagic MarineMNTILTIAGVIFTLVIAGNLEMIDHSQDLEKEIKNSMDFNNLFN*
Ga0115547_125854023300009426Pelagic MarineIAGVIFTLVIAGNLEMIDHSQDLEKEIKNSIDLNHLFN*
Ga0115545_103126043300009433Pelagic MarineMNTILTIAGVIFTLVIAGNLEMIDHSQDLEKEIKNSIDLNHLFN*
Ga0115102_1034313823300009606MarineLSLMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQNSIDLNYLFN*
Ga0098056_102079513300010150MarineSLMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNYLFN*
Ga0098056_106087113300010150MarineIFTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLFN*
Ga0181387_103901913300017709SeawaterSNMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKEIKKSIDLNHLFT
Ga0181387_107381413300017709SeawaterILTIAGVIFTLVIAGNLEMLDHSQDLEKDLQNSIDLDYLFN
Ga0181403_106417813300017710SeawaterMNTILTIAGVIFTLVIAGNLEMLDHSQDLEKDLQNSIDLDYLFN
Ga0181403_108198413300017710SeawaterMNSILTIAGVIFTLVIAGNLEMIDYSQDLEKDLQNSIDLDYLFN
Ga0181391_103263043300017713SeawaterTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0181404_114149323300017717SeawaterNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0181388_108813613300017724SeawaterSNMNTILTIAGVIFTLVIAGNLEMLDHSQDLEKDLQNSIDLDYLFN
Ga0181416_109964513300017731SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQK
Ga0181426_103656713300017733SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKGIDLNHLFN
Ga0181402_102766633300017743SeawaterMHTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0181393_111390333300017748SeawaterMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLF
Ga0181392_106943413300017749SeawaterSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNHLFN
Ga0181405_104877843300017750SeawaterSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0181407_103734613300017753SeawaterILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0181407_107719713300017753SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSI
Ga0181407_111042913300017753SeawaterPLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0181382_105729443300017756SeawaterIAGVIFTLVIAGNLEMLDHSKDLEKDLQNSIDLDYLFD
Ga0181414_111142233300017759SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNY
Ga0181408_112634813300017760SeawaterTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0181410_110134633300017763SeawaterSTPLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0181406_108302713300017767SeawaterTPLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0181406_112250813300017767SeawaterTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNYLFN
Ga0181430_102842233300017772SeawaterMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKEIKKSIDLNHLFN
Ga0181380_123925013300017782SeawaterTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0206127_126891223300020169SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSQDLEKEIKNSIDLNHLFN
Ga0211504_100967813300020347MarineILTIAGVIFTLVIAGNLEMIDHSQDLEKEIKNSIDLNHLFN
Ga0211505_107104323300020352MarineMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNHLFN
Ga0211505_108671223300020352MarineMNSILTIAGVIFTLVIAGNLEMIDHSQDLEKEIKNSIDLNHLFN
Ga0211677_1001795533300020385MarineMNSILTIAGVIFTLVIAGNLEMLDHSQDLEKDLQNSIDLDYLFN
Ga0211677_1015040133300020385MarineMNSILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLFN
Ga0211677_1038831123300020385MarineMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0211576_1001857553300020438MarineMNTILTIAGVIFTLVIAGNLEMIDYSQDLEKDLQNSIDLDYLFN
Ga0206682_1015657923300021185SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0206682_1042244913300021185SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0213867_129340823300021335SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0213862_1002365513300021347SeawaterLTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSIDLNYLFN
Ga0213862_1019477613300021347SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKDFQKSID
Ga0213863_10002226103300021371SeawaterMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKKFKNSIDLNHLFN
Ga0222717_1001583123300021957Estuarine WaterMNTILTIAGVIFTLVIYGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0222717_1001842563300021957Estuarine WaterMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQNSIDLNYLFN
Ga0222717_1041336713300021957Estuarine WaterILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0222717_1045778233300021957Estuarine WaterSSSSTPLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
(restricted) Ga0233432_1011471333300023109SeawaterIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
(restricted) Ga0233432_1026647513300023109SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLN
(restricted) Ga0233432_1045993813300023109SeawaterGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
(restricted) Ga0233411_1031206623300023112SeawaterKPPSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
(restricted) Ga0233412_1004446723300023210SeawaterMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
(restricted) Ga0233412_1030817213300023210SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHL
(restricted) Ga0233410_1005289843300023276SeawaterMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLN
(restricted) Ga0233410_1026511313300023276SeawaterSSSSTPLSNMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
(restricted) Ga0255040_1041998823300024059SeawaterSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
(restricted) Ga0233438_1008011113300024255SeawaterLTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
(restricted) Ga0233437_105409123300024259SeawaterMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
(restricted) Ga0233439_1009325913300024261SeawaterRPLSLMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0244775_1010773923300024346EstuarineMNSILTIAGVIFTVVIAGNLEMLDHSEDLEKDLQNSIDLDYLFD
Ga0233393_109582813300024413SeawaterNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0228650_117380413300024417SeawaterGVIFTLVIAGNLEMLDHSKDLEKDLQNSIDLDYLFD
(restricted) Ga0255046_1011127333300024519SeawaterMNSILTIAGVIFTLVIAGNLEMLDRSEDLEKDLQNSIDLDYLFD
(restricted) Ga0255045_1005973113300024528SeawaterNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
(restricted) Ga0255044_1041338713300024529SeawaterILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0208667_100316143300025070MarineMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNYLFN
Ga0208793_113272423300025108MarineMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKDFQKSIDLNYLFN
Ga0209535_1001410223300025120MarineMNTILTISGVIFTLVIYGNLEMLDHSEDLEKEIKNSIDLDYLFD
Ga0209535_100945093300025120MarineMNTILTIAGVIFTLVIYGNLEMLDHSEDLEKEIKNSIDLNYLFK
Ga0209535_104463413300025120MarineTQQPLSLMNTILTITGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0208643_102111213300025645AqueousLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0208970_107374813300027298MarineAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0207994_100601253300027416EstuarineSSKPPSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0208304_1014129033300027751EstuarineLTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
(restricted) Ga0233413_1009449443300027996SeawaterVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
(restricted) Ga0233414_1041483733300028045SeawaterSTPLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKKSIDLNHLFN
Ga0228606_107316813300028135SeawaterMNSILTIAGVIFTLVIAGNLEMLDHSKDLEKDLQNSIDLDYLFD
Ga0228615_106267513300028418SeawaterPNSSSTPLSNMNTILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN
Ga0315321_1052741513300032088SeawaterMNTILTIAGVIFTLVIAGNLEMLDHSEDLEKEIKKSIDLNQLFN
Ga0316203_106934813300032274Microbial MatHFNNMNSILTIAGVIFTLVIAGNLEMIDHSEDLEKEIKNSIDLNHLFN


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.