NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F084064

Metagenome Family F084064

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084064
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 61 residues
Representative Sequence MRQISIILATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAI
Number of Associated Samples 57
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.04 %
% of genes near scaffold ends (potentially truncated) 28.57 %
% of genes from short scaffolds (< 2000 bps) 81.25 %
Associated GOLD sequencing projects 50
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.357 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(38.393 % of family members)
Environment Ontology (ENVO) Unclassified
(56.250 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(85.714 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 38.89%    β-sheet: 0.00%    Coil/Unstructured: 61.11%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF00400WD40 27.68
PF00486Trans_reg_C 2.68
PF08281Sigma70_r4_2 1.79
PF00005ABC_tran 1.79
PF00226DnaJ 0.89
PF03466LysR_substrate 0.89
PF06472ABC_membrane_2 0.89
PF13531SBP_bac_11 0.89
PF00037Fer4 0.89
PF13187Fer4_9 0.89
PF00313CSD 0.89
PF08327AHSA1 0.89
PF04542Sigma70_r2 0.89
PF01520Amidase_3 0.89
PF13857Ank_5 0.89
PF13432TPR_16 0.89
PF04392ABC_sub_bind 0.89
PF07568HisKA_2 0.89
PF10077DUF2314 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.89
COG0860N-acetylmuramoyl-L-alanine amidaseCell wall/membrane/envelope biogenesis [M] 0.89
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.89
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.89
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.89
COG3920Two-component sensor histidine kinase, HisKA and HATPase domainsSignal transduction mechanisms [T] 0.89
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.89


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A55.36 %
All OrganismsrootAll Organisms44.64 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004268|Ga0066398_10180995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium546Open in IMG/M
3300004633|Ga0066395_10089105All Organisms → cellular organisms → Bacteria → Proteobacteria1463Open in IMG/M
3300004633|Ga0066395_10590050Not Available650Open in IMG/M
3300004633|Ga0066395_10777951Not Available573Open in IMG/M
3300005332|Ga0066388_100201907All Organisms → cellular organisms → Bacteria → Proteobacteria2609Open in IMG/M
3300005332|Ga0066388_100704955All Organisms → cellular organisms → Bacteria → Proteobacteria1616Open in IMG/M
3300005332|Ga0066388_102405929All Organisms → cellular organisms → Bacteria → Proteobacteria955Open in IMG/M
3300005332|Ga0066388_102871232Not Available880Open in IMG/M
3300005332|Ga0066388_103860910All Organisms → cellular organisms → Bacteria → Proteobacteria765Open in IMG/M
3300005332|Ga0066388_104185679Not Available735Open in IMG/M
3300005332|Ga0066388_108807374All Organisms → cellular organisms → Bacteria → Proteobacteria501Open in IMG/M
3300005713|Ga0066905_101115961All Organisms → cellular organisms → Bacteria → Proteobacteria701Open in IMG/M
3300005713|Ga0066905_101691394Not Available581Open in IMG/M
3300005764|Ga0066903_100262987All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2680Open in IMG/M
3300005764|Ga0066903_101183555Not Available1418Open in IMG/M
3300005764|Ga0066903_103172569Not Available889Open in IMG/M
3300005764|Ga0066903_106317128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales619Open in IMG/M
3300006755|Ga0079222_11319597Not Available659Open in IMG/M
3300006804|Ga0079221_11662478Not Available519Open in IMG/M
3300006804|Ga0079221_11688244Not Available516Open in IMG/M
3300006903|Ga0075426_10081268All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2316Open in IMG/M
3300009792|Ga0126374_10575307All Organisms → cellular organisms → Bacteria → Proteobacteria827Open in IMG/M
3300009792|Ga0126374_10693797Not Available765Open in IMG/M
3300009792|Ga0126374_11023503Not Available649Open in IMG/M
3300010043|Ga0126380_10010112All Organisms → cellular organisms → Bacteria4194Open in IMG/M
3300010043|Ga0126380_10100161All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1736Open in IMG/M
3300010043|Ga0126380_10186781All Organisms → cellular organisms → Bacteria → Proteobacteria1372Open in IMG/M
3300010043|Ga0126380_10309176All Organisms → cellular organisms → Bacteria → Proteobacteria1129Open in IMG/M
3300010046|Ga0126384_10409359All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_20CM_4_66_111147Open in IMG/M
3300010046|Ga0126384_10416739All Organisms → cellular organisms → Bacteria → Proteobacteria1138Open in IMG/M
3300010047|Ga0126382_10559271Not Available933Open in IMG/M
3300010047|Ga0126382_10966396Not Available743Open in IMG/M
3300010047|Ga0126382_11332391All Organisms → cellular organisms → Bacteria → Proteobacteria651Open in IMG/M
3300010358|Ga0126370_10009883All Organisms → cellular organisms → Bacteria5052Open in IMG/M
3300010358|Ga0126370_10450108All Organisms → cellular organisms → Bacteria → Proteobacteria1073Open in IMG/M
3300010358|Ga0126370_11613047Not Available621Open in IMG/M
3300010358|Ga0126370_11933738Not Available575Open in IMG/M
3300010359|Ga0126376_10084907Not Available2366Open in IMG/M
3300010359|Ga0126376_10164500All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae1796Open in IMG/M
3300010359|Ga0126376_10581781Not Available1055Open in IMG/M
3300010359|Ga0126376_11168303Not Available782Open in IMG/M
3300010359|Ga0126376_11938693Not Available630Open in IMG/M
3300010360|Ga0126372_11226731Not Available775Open in IMG/M
3300010360|Ga0126372_11976258Not Available629Open in IMG/M
3300010360|Ga0126372_13093864Not Available516Open in IMG/M
3300010361|Ga0126378_10207437All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2039Open in IMG/M
3300010361|Ga0126378_10445712All Organisms → cellular organisms → Bacteria → Proteobacteria1409Open in IMG/M
3300010361|Ga0126378_11708849Not Available715Open in IMG/M
3300010366|Ga0126379_10159091All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae2118Open in IMG/M
3300010366|Ga0126379_10341009Not Available1524Open in IMG/M
3300010366|Ga0126379_10541681Not Available1242Open in IMG/M
3300010366|Ga0126379_10725834Not Available1089Open in IMG/M
3300010366|Ga0126379_10760984Not Available1066Open in IMG/M
3300010366|Ga0126379_11578040Not Available762Open in IMG/M
3300010366|Ga0126379_12049670All Organisms → cellular organisms → Bacteria → Proteobacteria674Open in IMG/M
3300010376|Ga0126381_103662961All Organisms → cellular organisms → Bacteria → Proteobacteria602Open in IMG/M
3300010376|Ga0126381_104879403Not Available515Open in IMG/M
3300010398|Ga0126383_10070372All Organisms → cellular organisms → Bacteria3006Open in IMG/M
3300012971|Ga0126369_10978923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae933Open in IMG/M
3300015371|Ga0132258_10009864All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales19715Open in IMG/M
3300015374|Ga0132255_105817902Not Available522Open in IMG/M
3300016294|Ga0182041_10944948Not Available777Open in IMG/M
3300016294|Ga0182041_11684856Not Available587Open in IMG/M
3300016319|Ga0182033_11162621Not Available690Open in IMG/M
3300016357|Ga0182032_10249265All Organisms → cellular organisms → Bacteria1379Open in IMG/M
3300016357|Ga0182032_11157172All Organisms → cellular organisms → Bacteria → Proteobacteria665Open in IMG/M
3300016404|Ga0182037_10088746All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2193Open in IMG/M
3300016404|Ga0182037_11718337Not Available560Open in IMG/M
3300016422|Ga0182039_11704096Not Available577Open in IMG/M
3300016445|Ga0182038_10279246All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1356Open in IMG/M
3300016445|Ga0182038_10599645Not Available951Open in IMG/M
3300017970|Ga0187783_10016479All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5457Open in IMG/M
3300017970|Ga0187783_10370169Not Available1043Open in IMG/M
3300017970|Ga0187783_10728963Not Available715Open in IMG/M
3300017970|Ga0187783_11155517Not Available558Open in IMG/M
3300017974|Ga0187777_10988268Not Available608Open in IMG/M
3300017975|Ga0187782_10803991Not Available727Open in IMG/M
3300018060|Ga0187765_11003378All Organisms → cellular organisms → Bacteria → Proteobacteria573Open in IMG/M
3300018060|Ga0187765_11111001Not Available549Open in IMG/M
3300021178|Ga0210408_10114726All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2122Open in IMG/M
3300021560|Ga0126371_10122791Not Available2624Open in IMG/M
3300021560|Ga0126371_10170676All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2252Open in IMG/M
3300021560|Ga0126371_10429968All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae1465Open in IMG/M
3300021560|Ga0126371_10577500Not Available1273Open in IMG/M
3300021560|Ga0126371_13708012Not Available515Open in IMG/M
3300027703|Ga0207862_1239055Not Available534Open in IMG/M
3300027874|Ga0209465_10069852All Organisms → cellular organisms → Bacteria → Proteobacteria1701Open in IMG/M
3300027874|Ga0209465_10452111Not Available642Open in IMG/M
3300031545|Ga0318541_10051717All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2111Open in IMG/M
3300031681|Ga0318572_10940519Not Available513Open in IMG/M
3300031719|Ga0306917_10381649All Organisms → cellular organisms → Bacteria → Proteobacteria1099Open in IMG/M
3300031719|Ga0306917_11502755Not Available518Open in IMG/M
3300031736|Ga0318501_10711146Not Available554Open in IMG/M
3300031744|Ga0306918_10439539Not Available1019Open in IMG/M
3300031751|Ga0318494_10426159Not Available771Open in IMG/M
3300031768|Ga0318509_10760483Not Available537Open in IMG/M
3300031771|Ga0318546_11141812Not Available547Open in IMG/M
3300031890|Ga0306925_11177498Not Available769Open in IMG/M
3300031897|Ga0318520_10994554Not Available530Open in IMG/M
3300031912|Ga0306921_10055044All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4527Open in IMG/M
3300031912|Ga0306921_11069410Not Available906Open in IMG/M
3300031945|Ga0310913_10109415All Organisms → cellular organisms → Bacteria → Proteobacteria1878Open in IMG/M
3300031946|Ga0310910_10231273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1442Open in IMG/M
3300031947|Ga0310909_11597485Not Available517Open in IMG/M
3300031954|Ga0306926_10092964All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3688Open in IMG/M
3300031954|Ga0306926_10246276Not Available2216Open in IMG/M
3300032001|Ga0306922_10250956All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1902Open in IMG/M
3300032059|Ga0318533_11290663All Organisms → cellular organisms → Bacteria → Proteobacteria534Open in IMG/M
3300032068|Ga0318553_10726716Not Available519Open in IMG/M
3300032076|Ga0306924_10110751All Organisms → cellular organisms → Bacteria3114Open in IMG/M
3300032261|Ga0306920_100056651All Organisms → cellular organisms → Bacteria5708Open in IMG/M
3300033289|Ga0310914_11205923Not Available659Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil38.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil17.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.50%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland7.14%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.68%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.79%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.89%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066398_1018099513300004268Tropical Forest SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGSAPIDVMKMMRDAKDLPNENYPAH*
Ga0066395_1008910523300004633Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYQAH*
Ga0066395_1059005023300004633Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAN*
Ga0066395_1077795113300004633Tropical Forest SoilMRQITVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRTPDPIDVMKMMRDAKALPNQSYPAH*
Ga0066388_10020190723300005332Tropical Forest SoilMRQITIVLATAVITATVTVASMMAISSSSTRTGAVMPASTPIDVMKMMKNAKDLPNQSYPSH*
Ga0066388_10070495523300005332Tropical Forest SoilMRQISIILATAVIAATVTVAGMMAFSSSSTRNGVVARGPGTIDVMKMMKDAKDLPNESYPAQ*
Ga0066388_10240592923300005332Tropical Forest SoilTAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH*
Ga0066388_10287123223300005332Tropical Forest SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAK
Ga0066388_10386091013300005332Tropical Forest SoilMRQISIVLATAVITAAVTVASMMAISSSSTRTGAAVRESTPIDVMKMMKDAKDLPNQSYPAH*
Ga0066388_10418567923300005332Tropical Forest SoilMRQITIILVTAVLTAMVTVFSMMATSSNSVRTSAEVRAPDPIDVMKMMRDAKDLPNQSYPAH*
Ga0066388_10880737413300005332Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRTGVVAHGPAPIDVMKMMRDAKDLPNENYLAH*
Ga0066905_10111596123300005713Tropical Forest SoilMRQFSVILATAVITAVVTAASMMAISSSSSRSGVIASGPGPINVMKMMRDAKDLPNENYPAH*
Ga0066905_10169139423300005713Tropical Forest SoilMRQISIILATAVIAATVTVAGMMAFSSSSTRGGALARGPGPVNVMKMMRDAKDLPNESYPAH*
Ga0066903_10026298733300005764Tropical Forest SoilMRQIFIILATAVITATVTVASMMVISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0066903_10118355533300005764Tropical Forest SoilMRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH*
Ga0066903_10317256933300005764Tropical Forest SoilMRQITIILVTTVLTAMVTVFSMMATSSNSVRTSAEVRAPDPIDVMKMMRDAKDLPNQSYPAQ*
Ga0066903_10631712823300005764Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSSSTRTGAVAPASPIDVMKMMKDAKDLPNQSYPAH*
Ga0079222_1131959723300006755Agricultural SoilAQRPRVEAKMRQVTVILVTAVLTVMVTVFSMMAKSSNSVRTSAEVRAPDPIDVMKIMRDAKDLPNQSYPAD*
Ga0079221_1166247813300006804Agricultural SoilMRQITVILVTAVLTVMVTVFSMMAKSSNSVRTSAEVRAPDPIDVMKIMRDAKDLPNQSYPAH*
Ga0079221_1168824423300006804Agricultural SoilMRQISVILATAVITAAVTVASMMAISSSSTRTGVVAHGPGPIDVMKMMRDAKDLPNENYPAN*
Ga0075426_1008126823300006903Populus RhizosphereMRQVTVILVTAVLTVMVTVFSMMAKSSNSVRTSAEVRAPDPIDVMKIMRDAKDLPNQSYPAH*
Ga0126374_1057530723300009792Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGSGSIDIMKMMRDAKGLPNENYPAN*
Ga0126374_1069379713300009792Tropical Forest SoilMRQISIILATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAI*
Ga0126374_1102350323300009792Tropical Forest SoilMRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYP
Ga0126380_1001011223300010043Tropical Forest SoilMRQIIVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRAPDPIDVMKMMRNAKALPNQSYPAH*
Ga0126380_1010016133300010043Tropical Forest SoilMRQISIILATAVIAATVTVAGMMAFSSSSTRGGVVARGPGPVNVMKMMRDAKDLPNESYPAH*
Ga0126380_1018678113300010043Tropical Forest SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH*
Ga0126380_1030917623300010043Tropical Forest SoilMMRQFSVILATAVITAVVTAASMMAISSSSSRSGVIASGPGPINVMKMMRDAKDLPNENYPAH*
Ga0126384_1040935913300010046Tropical Forest SoilMRQIIVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRTPDPIDVMKMMRDAKALPNQSYPAH*
Ga0126384_1041673923300010046Tropical Forest SoilVRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDIMKMMRDAKGLPSENYPAN*
Ga0126382_1055927123300010047Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGGVAHGPGSIDIMKMMRDAKGLPSENYPAN*
Ga0126382_1096639613300010047Tropical Forest SoilLATAVITATVTVASMMAISSTSTRTGAAVRASTPIDVMKMMRDAKDLPEQSYPAI*
Ga0126382_1133239123300010047Tropical Forest SoilMRQISVILATAVIAATVTVAGMMAFSSSSSRSGVVARGPGPVDVMKMMRDAKDLPNESYPAQ*
Ga0126370_1000988323300010358Tropical Forest SoilMRQITVILVTAVLTAMVTAFSMMATSSNSIRTSAELRAPDPIDVMKMMRDAKALPNQSYPAH*
Ga0126370_1045010823300010358Tropical Forest SoilMRQVSVILATAIITAAVTVASMMAISSSSTRSGLVAHGSGSIDIMKMMRDAKGLPNENYPPN*
Ga0126370_1161304713300010358Tropical Forest SoilAVITATVTVASMMVISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126370_1193373823300010358Tropical Forest SoilMRQISIVLATAVITAAVTVASVMAISSSSRRTGASVRASSPIDVMKMMKDAKDLPNQS
Ga0126376_1008490723300010359Tropical Forest SoilMMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH*
Ga0126376_1016450023300010359Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSTSTRTGAAVRASTPIDVMKMMRDAKDLPEQSYPAI*
Ga0126376_1058178113300010359Tropical Forest SoilMRQIFIILATAVITATVTVASMMVICSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126376_1116830313300010359Tropical Forest SoilHYRLREERKMREISIILVTAFITATVTVASMMAISASSTRTGAALRASTSIDVMKMMKDAKNLSEQSYPAN*
Ga0126376_1193869313300010359Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSSSTRTGAVVPASPIDVMKMMKDAKDLPNQSYPAH*
Ga0126372_1122673113300010360Tropical Forest SoilVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126372_1197625813300010360Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSSSWRTGAVVREATSIDVMKMMKDAKDLPNQSYPAY*
Ga0126372_1309386413300010360Tropical Forest SoilMRQIFIILATAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126378_1020743713300010361Tropical Forest SoilMRQISIVLATAVITATVTLASMMAISTSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAN*
Ga0126378_1044571233300010361Tropical Forest SoilMRQISIVLATAVITAAVTVASMMAISSGSRRTGAFVRESTPIDVMKMMKDAKDLPNQSYPAH*
Ga0126378_1170884923300010361Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYQ
Ga0126379_1015909113300010366Tropical Forest SoilTVILVTAVLTAMVTAFSMMATSSNSIRTSAELRAPDPIDVMKMMRDAKALPNQSYPAH*
Ga0126379_1034100913300010366Tropical Forest SoilMRQITIILVTTVLTAMVTAFSMMATSSNSIRTSAEVRAPDPIDVMKMMRNAKALPNQSYPAH*
Ga0126379_1054168133300010366Tropical Forest SoilVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126379_1072583423300010366Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDIMKMMRDAKGLPSENYPAN*
Ga0126379_1076098433300010366Tropical Forest SoilMRQISIILATAVVTAIVTVAGMMAISSSSPRAGAVVRASTPIDVMKMMKDVKDLPEQSYPAN*
Ga0126379_1157804023300010366Tropical Forest SoilMRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAN*
Ga0126379_1204967013300010366Tropical Forest SoilMRQFSVILATAVITAAVTVASMMAISSSSTRSGVVAHGSSPIDVMKMMRDAKDLPNENYPAH*
Ga0126381_10366296123300010376Tropical Forest SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKELPNENYPAH*
Ga0126381_10487940333300010376Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYP
Ga0126383_1007037223300010398Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMRDAKDLPEQSYPAI*
Ga0126369_1097892323300012971Tropical Forest SoilMRQISIILATAVITATVTVASMMAISSSSPRAGAVVRASTPIDVMKMMKDVKDLPEQSYPAN*
Ga0132258_1000986423300015371Arabidopsis RhizosphereMRQISVILATAVITAAVTVASMMAISSSSTRSGMVARGPGSIDVMQMMRDAKDLPNENYPAH*
Ga0132255_10581790213300015374Arabidopsis RhizosphereMRQISVILATAVITAAVTVASMMAISSGSTRSGVVARGPGPIDVMKMMREAKDLPNENYPAH*
Ga0182041_1094494823300016294SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0182041_1168485613300016294SoilMRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVPASTPIDVMKMMKDAKDLPNRSYPAH
Ga0182033_1116262123300016319SoilMRQISIILATAVITAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKDLPNQSYPTH
Ga0182032_1024926523300016357SoilMRQIFIILTTAVITATVTVANMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0182032_1115717223300016357SoilTAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0182037_1008874633300016404SoilMRQIFIILTTAVITATGTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0182037_1171833723300016404SoilSVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0182039_1170409613300016422SoilMRQISIVLATAVITAAVTVASMMAISSGSRRTGAFVRESTPIDVMQMMKDAKDLPNQSYP
Ga0182038_1027924613300016445SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDI
Ga0182038_1059964513300016445SoilMRQISIVLATAVITATVTVASMMAINSNSTRAGAVVRASNSLDVLKLMKDAKDLPE
Ga0187783_1001647923300017970Tropical PeatlandMRQITVILATAVLTAIVTVFSMMATGSNSVRISPVVGAPDPIDVMKLMREAKDLPNQSYQAN
Ga0187783_1037016913300017970Tropical PeatlandMRQITVILVTAALTAMATVFSMIATSSNPVRTVRTSAEVRAPDPIDVMKMMTDAKDLPNQSYPAH
Ga0187783_1072896313300017970Tropical PeatlandMHQITVILVTAVITATVTVFSMMATSSNPEQSGGEVHAYAPIDVMKMMREAKDLPTQSYPAH
Ga0187783_1115551723300017970Tropical PeatlandMRQITVILMTAVLTAIVTVFSMMATGSDSVRTGPVVGARDPIPDPIDVMKMMRDAKDLPNQSYQAN
Ga0187777_1098826823300017974Tropical PeatlandEESKMRQITVILVTAMLTAIVTVFSMMAISSNAVPGSTEVRTPNPIDIMKMMRDAKNLPNESYPAH
Ga0187782_1080399113300017975Tropical PeatlandMRAQRLGGESNMRQITVILATAVLTAIVTVFSMMATGSNSVRIGPVFGAPDPIDVMKLMREAKDLPNQSYQAN
Ga0187765_1100337813300018060Tropical PeatlandMRQISVILATAVITAAVTVASMMAISSSSTRSGVVARGSGPIDVMKMMREAKDLPNENYPAH
Ga0187765_1111100123300018060Tropical PeatlandMRQITVILLTAVLTAMVTVFSMMATSSNSSRSRAEVGAPDPIDVMKMMRNAKDLPNQSYPAH
Ga0210408_1011472633300021178SoilTAAVTVASMMAISSSSTRTGVVAHGPGPIDVMKMMRDAKDLPNENYLAH
Ga0126371_1012279133300021560Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVARGSGSIDIMKMMRDAKGLPNENYPAN
Ga0126371_1017067613300021560Tropical Forest SoilQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH
Ga0126371_1042996833300021560Tropical Forest SoilMRQITVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRTPDPIDVMKMMRDAKALPNQSYPAH
Ga0126371_1057750023300021560Tropical Forest SoilMRQISIVLATAVITATVTVASMMAISSSSTRTGAVVPASPIDVMKMMKDAKDLPNQSYPA
Ga0126371_1370801223300021560Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYPAH
Ga0207862_123905513300027703Tropical Forest SoilMRQITVIVVTTAVTAMVTVFSMMATSSNSVRPGAEVRAPLPIDVMKMMRDAKDLPNENYPAN
Ga0209465_1006985223300027874Tropical Forest SoilMRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYQAH
Ga0209465_1045211113300027874Tropical Forest SoilMRQITVILVTAVLTAMVTVFSMMATSSNSVRTSAEVRAPDPIDVMKMMRDAKDLPNQSYPAH
Ga0318541_1005171713300031545SoilLTTAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0318572_1094051923300031681SoilMRQFSVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENY
Ga0306917_1038164923300031719SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0306917_1150275513300031719SoilMRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAN
Ga0318501_1071114613300031736SoilMRQISIVLATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPEQSYPRWGPGGPWADQVPY
Ga0306918_1043953923300031744SoilMRQISIVLATAVITAAVTVASMMAISSGSRRTGAFVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0318494_1042615913300031751SoilMRQIFIILTTAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0318509_1076048323300031768SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDIMK
Ga0318546_1114181213300031771SoilMRQISIVLATAVITAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0306925_1117749833300031890SoilMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDIMKMMRDVKDLPNENYPAN
Ga0318520_1099455423300031897SoilMRQISIVLATAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0306921_1005504453300031912SoilMRQISVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDIMKMMRDVKDLPNENYPAN
Ga0306921_1106941013300031912SoilMRQITVILVTSVFTAAVTVFSMMAISSSPVRTGADMHAAVPIDVMQMMRDAKELPNQNY
Ga0310913_1010941523300031945SoilMRQITVILVTAVLTATVTVFSMMAISSSSVRTGADVHASAPIDVMKMMRDAKDLPNQSYPAH
Ga0310910_1023127313300031946SoilMRQITVILVTSVFTAAVTVFSMMAISSSPVRTGADMHAAVPIDVMQMMRDAKELPNQNYPAY
Ga0310909_1159748513300031947SoilMRQIFIILTTAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQS
Ga0306926_1009296423300031954SoilMRQFSVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0306926_1024627623300031954SoilMRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0306922_1025095633300032001SoilVLTATVTVFSMMAISSSSVRTGADVHASAPIDVMKMMRDAKDLPNQSYPAH
Ga0318533_1129066323300032059SoilSEMRQITVILVTAVLTATVTVFSMMAISSSSVRTGADVHASAPIDVMKMMRDAKDLPNQSYPAH
Ga0318553_1072671613300032068SoilMRQISIVLATAVITAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKD
Ga0306924_1011075163300032076SoilMRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAN
Ga0306920_10005665123300032261SoilMRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMRDAKDLPEQSYPAI
Ga0310914_1120592323300033289SoilMRQISIILATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMRDAKDLPEQSYPAI


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