Metagenome Family F084060

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084060
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	74 residues
Representative Sequence	MATKIKMMKLLTETDATKEVDRVPPKPALFMMRTRAFQPALPKRRLPIRIYPGDNAQPAPVQIIFLKPDQKA
Number of Associated Samples	86
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.32 %
% of genes near scaffold ends (potentially truncated)	19.64 %
% of genes from short scaffolds (< 2000 bps)	77.68 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (40.179 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.357 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.00% β-sheet: 0.00% Coil/Unstructured: 76.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF14014	DUF4230	38.39
PF13100	OstA_2	4.46
PF00490	ALAD	4.46
PF04972	BON	2.68
PF04073	tRNA_edit	1.79
PF04453	LptD	1.79
PF16363	GDP_Man_Dehyd	0.89
PF01040	UbiA	0.89
PF06414	Zeta_toxin	0.89
PF07691	PA14	0.89
PF14686	fn3_3	0.89
PF03968	LptD_N	0.89
PF07859	Abhydrolase_3	0.89
PF00005	ABC_tran	0.89
PF02738	MoCoBD_1	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	4.46
COG1452	LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA)	Cell wall/membrane/envelope biogenesis [M]	1.79
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	40.18 %
Unclassified	root	N/A	37.50 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.79 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	40.18 %
Unclassified	root	N/A	37.50 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.79 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	1.79 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.79 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	1.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	1.79 %
Candidatus Uhrbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Uhrbacteria	1.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	1.79 %
Candidatus Uhrbacteria bacterium GW2011_GWF2_41_16	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Uhrbacteria → Candidatus Uhrbacteria bacterium GW2011_GWF2_41_16	1.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1.79 %
Candidatus Uhrbacteria bacterium GW2011_GWF2_41_16	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Uhrbacteria → Candidatus Uhrbacteria bacterium GW2011_GWF2_41_16	1.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003320\|rootH2_10230513	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300003321\|soilH1_10187877	All Organisms → cellular organisms → Bacteria	1767	Open in IMG/M
3300003324\|soilH2_10053670	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300004153\|Ga0063455_100471695	Not Available	770	Open in IMG/M
3300005260\|Ga0074072_1002332	All Organisms → cellular organisms → Bacteria	10952	Open in IMG/M
3300005327\|Ga0070658_10017740	All Organisms → cellular organisms → Bacteria	5693	Open in IMG/M
3300005329\|Ga0070683_101950386	Not Available	564	Open in IMG/M
3300005336\|Ga0070680_101047887	Not Available	705	Open in IMG/M
3300005340\|Ga0070689_102018913	Not Available	527	Open in IMG/M
3300005341\|Ga0070691_10023361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2871	Open in IMG/M
3300005343\|Ga0070687_101095591	Not Available	582	Open in IMG/M
3300005345\|Ga0070692_10642547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	707	Open in IMG/M
3300005435\|Ga0070714_100013662	All Organisms → cellular organisms → Bacteria	6512	Open in IMG/M
3300005436\|Ga0070713_100966510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	821	Open in IMG/M
3300005458\|Ga0070681_10014619	All Organisms → cellular organisms → Bacteria	7811	Open in IMG/M
3300005458\|Ga0070681_10042835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4536	Open in IMG/M
3300005458\|Ga0070681_11175520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	689	Open in IMG/M
3300005459\|Ga0068867_101040877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	744	Open in IMG/M
3300005530\|Ga0070679_100184672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2057	Open in IMG/M
3300005530\|Ga0070679_102119382	Not Available	512	Open in IMG/M
3300005535\|Ga0070684_100195643	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300005539\|Ga0068853_100276917	Not Available	1546	Open in IMG/M
3300005563\|Ga0068855_100048977	All Organisms → cellular organisms → Bacteria	4985	Open in IMG/M
3300005563\|Ga0068855_100103797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3270	Open in IMG/M
3300005563\|Ga0068855_100268257	Not Available	1899	Open in IMG/M
3300005577\|Ga0068857_101381838	Not Available	685	Open in IMG/M
3300005614\|Ga0068856_102341378	Not Available	542	Open in IMG/M
3300005834\|Ga0068851_10214856	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1078	Open in IMG/M
3300006755\|Ga0079222_11908631	Not Available	580	Open in IMG/M
3300006804\|Ga0079221_10319893	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300009093\|Ga0105240_10373303	Not Available	1612	Open in IMG/M
3300009093\|Ga0105240_10660069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1145	Open in IMG/M
3300009174\|Ga0105241_10155714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1873	Open in IMG/M
3300009176\|Ga0105242_10685300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1001	Open in IMG/M
3300009176\|Ga0105242_11698413	Not Available	667	Open in IMG/M
3300010048\|Ga0126373_10468909	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1297	Open in IMG/M
3300010048\|Ga0126373_13150154	Not Available	514	Open in IMG/M
3300010359\|Ga0126376_13228624	Not Available	504	Open in IMG/M
3300010361\|Ga0126378_11582255	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Uhrbacteria → Candidatus Uhrbacteria bacterium GW2011_GWF2_41_16	744	Open in IMG/M
3300010371\|Ga0134125_10371398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1587	Open in IMG/M
3300010371\|Ga0134125_10635854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1179	Open in IMG/M
3300010371\|Ga0134125_10875169	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	987	Open in IMG/M
3300010371\|Ga0134125_11037313	Not Available	899	Open in IMG/M
3300010371\|Ga0134125_12379645	Not Available	576	Open in IMG/M
3300010373\|Ga0134128_10007236	All Organisms → cellular organisms → Bacteria	13407	Open in IMG/M
3300010373\|Ga0134128_10070446	All Organisms → cellular organisms → Bacteria	4008	Open in IMG/M
3300010376\|Ga0126381_100094697	All Organisms → cellular organisms → Bacteria	3797	Open in IMG/M
3300010376\|Ga0126381_100402150	All Organisms → cellular organisms → Bacteria	1908	Open in IMG/M
3300010376\|Ga0126381_102062419	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300010396\|Ga0134126_10013700	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	10233	Open in IMG/M
3300010396\|Ga0134126_11300994	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	805	Open in IMG/M
3300010396\|Ga0134126_11373442	Not Available	781	Open in IMG/M
3300012469\|Ga0150984_108516839	Not Available	567	Open in IMG/M
3300012927\|Ga0137416_10650642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	922	Open in IMG/M
3300012929\|Ga0137404_10205654	Not Available	1670	Open in IMG/M
3300012960\|Ga0164301_11655003	Not Available	533	Open in IMG/M
3300012971\|Ga0126369_13109346	Not Available	543	Open in IMG/M
3300013104\|Ga0157370_10546944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1061	Open in IMG/M
3300013105\|Ga0157369_10466955	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1307	Open in IMG/M
3300013296\|Ga0157374_10383516	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1400	Open in IMG/M
3300013296\|Ga0157374_11119254	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	808	Open in IMG/M
3300014969\|Ga0157376_10504715	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1189	Open in IMG/M
3300017970\|Ga0187783_11247420	Not Available	535	Open in IMG/M
3300019999\|Ga0193718_1000179	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	15280	Open in IMG/M
3300020140\|Ga0179590_1142671	Not Available	653	Open in IMG/M
3300021168\|Ga0210406_10831770	Not Available	700	Open in IMG/M
3300021404\|Ga0210389_10441094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1024	Open in IMG/M
3300021405\|Ga0210387_11030729	Not Available	720	Open in IMG/M
3300021479\|Ga0210410_10565269	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1012	Open in IMG/M
3300021560\|Ga0126371_10583100	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300021560\|Ga0126371_10783847	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1100	Open in IMG/M
3300024181\|Ga0247693_1024031	Not Available	823	Open in IMG/M
3300024186\|Ga0247688_1098012	Not Available	507	Open in IMG/M
3300024347\|Ga0179591_1181669	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2825	Open in IMG/M
3300025321\|Ga0207656_10406280	Not Available	685	Open in IMG/M
3300025909\|Ga0207705_11265793	Not Available	564	Open in IMG/M
3300025912\|Ga0207707_10054016	All Organisms → cellular organisms → Bacteria	3497	Open in IMG/M
3300025912\|Ga0207707_10158268	Not Available	1980	Open in IMG/M
3300025912\|Ga0207707_10854177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	755	Open in IMG/M
3300025913\|Ga0207695_10066250	All Organisms → cellular organisms → Bacteria	3710	Open in IMG/M
3300025913\|Ga0207695_10528470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1061	Open in IMG/M
3300025924\|Ga0207694_10035817	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3807	Open in IMG/M
3300025924\|Ga0207694_11140026	Not Available	660	Open in IMG/M
3300025928\|Ga0207700_10764284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	864	Open in IMG/M
3300025929\|Ga0207664_10010439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	6558	Open in IMG/M
3300025934\|Ga0207686_11837964	Not Available	502	Open in IMG/M
3300025936\|Ga0207670_11806527	Not Available	520	Open in IMG/M
3300025949\|Ga0207667_10083424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3309	Open in IMG/M
3300025949\|Ga0207667_10086203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	3250	Open in IMG/M
3300026041\|Ga0207639_10200780	Not Available	1710	Open in IMG/M
3300026078\|Ga0207702_10039400	All Organisms → cellular organisms → Bacteria	3958	Open in IMG/M
3300026078\|Ga0207702_10611737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1070	Open in IMG/M
3300026089\|Ga0207648_11101370	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	745	Open in IMG/M
3300026095\|Ga0207676_12251808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	543	Open in IMG/M
3300026116\|Ga0207674_10346362	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300027842\|Ga0209580_10654886	Not Available	519	Open in IMG/M
3300028536\|Ga0137415_10522873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	995	Open in IMG/M
3300028573\|Ga0265334_10252148	Not Available	607	Open in IMG/M
3300028800\|Ga0265338_10002315	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	28884	Open in IMG/M
3300031122\|Ga0170822_16107071	Not Available	726	Open in IMG/M
3300031128\|Ga0170823_11490420	Not Available	525	Open in IMG/M
3300031239\|Ga0265328_10128710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	947	Open in IMG/M
3300031446\|Ga0170820_14541520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	819	Open in IMG/M
3300031474\|Ga0170818_106105120	Not Available	1600	Open in IMG/M
3300031708\|Ga0310686_110391911	Not Available	552	Open in IMG/M
3300031726\|Ga0302321_100127591	All Organisms → cellular organisms → Bacteria	2585	Open in IMG/M
3300031962\|Ga0307479_10703815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Uhrbacteria → Candidatus Uhrbacteria bacterium GW2011_GWF2_41_16	989	Open in IMG/M
3300032805\|Ga0335078_10686507	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300032954\|Ga0335083_10310190	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1382	Open in IMG/M
3300033134\|Ga0335073_10994379	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	869	Open in IMG/M
3300033475\|Ga0310811_10181417	All Organisms → cellular organisms → Bacteria	2601	Open in IMG/M
3300033475\|Ga0310811_11040144	Not Available	708	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.18%
Host-Associated	Host-Associated	34.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.18%
Plants	Host-Associated → Plants	34.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.18%
Peat	Environmental → Terrestrial → Peat	0.89%
Rhizome	Host-Associated → Plants → Rhizome	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.96%
Loam	Environmental → Terrestrial → Soil → Loam	18.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.57%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	12.50%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	9.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.46%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
rootH2_102305132	3300003320	Sugarcane Root And Bulk Soil	MATKIKMLKLLMEAEANAEIDRRPPKAPLFLMNMRTRNFQPALPKRKLPIRIHPEDSTQPTPVKIVLLKPDEKA*
soilH1_101878772	3300003321	Sugarcane Root And Bulk Soil	MATKIKMMKLLTETDATKEVDRVPPKPALFMMRTRAFQPALPKRRLPIRIYPGDNAQPAPVQIIFLKPDQKA*
soilH2_100536702	3300003324	Sugarcane Root And Bulk Soil	MATKIKMMKFLTETDAAKEIDRVPPKPALFMMQMRTRSFQPALPKRRLPIRIYPGESSRPEPVQIIFLKPAAKA*
Ga0063455_1004716952	3300004153	Soil	MATKIKMMKLLTEMDAAREVDRVPPKPALFLMRTRAFQPSLPKRRLPIRIYPGENVQPTPVQIIFLKPDQKA*
Ga0074072_100233210	3300005260	Soil	MMKLLTETDATREIDRLPPKPALFMMRTRAFQPALPKRRLPIRIYPGEHDQPAPVQIIFLKPDQQA*
Ga0070658_100177405	3300005327	Corn Rhizosphere	MATKIKMMKLLTEVEATKEVDRVPPKPALFLMRQRAFQPTLPKRRLPVRIYPGDLDKPAPVQIIFLKPDQKA*
Ga0070683_1019503862	3300005329	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRVPPKPALFLMRTRAFQPALPKRRLPIRIYPGEHDRPAPVQIIFLKPDQQA*
Ga0070680_1010478872	3300005336	Corn Rhizosphere	MIKRMATKIKMMKLLTEADANKEVDRVPPKPALFMMQRSRTFQPALPKRRLPIRIYPGDNVQP
Ga0070689_1020189131	3300005340	Switchgrass Rhizosphere	MATKIKMMKLLTEMDATREVDRVPPKPALFLMRTRAFQPTLPKRRLPIRIYPGENEKPAPVQIIFLKPDQKA*
Ga0070691_100233612	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MATKIKMLKLLMEADARAEIDKCPPKPALYMIQMRPRAFQPSLPKRRLPIRIHPEDSSPAAPVPIIFLRPANKA*
Ga0070687_1010955912	3300005343	Switchgrass Rhizosphere	MATKIKMMKLLTEMDATREVDRVPPKPALFLMRTRAFQPALPKRRLPIRIYPGENEKPAPVQIIFLKPDQKA*
Ga0070692_106425471	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MMKLLTEVEATKEVDRVPPKPALFLMRQRAFQPTLPKRRLPVRIYPGDLDKPAPVQIIFLKPDQKA*
Ga0070714_1000136626	3300005435	Agricultural Soil	MATKIKMMKFLTEAEATKEIDRVPPKPALFMMNLRTRSFQPSLPKRRLPIRIYPGDISKPVPVPIIFLKPEPKA*
Ga0070713_1009665101	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MATKIKMMKFLTEAEATKEIDRVPPRPALFMMHLRTRSFQPALPKRRLPFRIYPGDNAQPVPVQIIFLKPEPKA*
Ga0070681_100146193	3300005458	Corn Rhizosphere	MTKRMATKIKMMKLLTEADANKEVDRVPPKPALFMMQRSRTFQPALPKRRLPIRIYPGDNVQPEPVQIIFLKPEPKA*
Ga0070681_100428352	3300005458	Corn Rhizosphere	MMKLLTETDATKEIDRMPPKPALFMMRTRTFQPALPKRRLPIRIYPGEHDRPAPVQIIFLKPDQQA*
Ga0070681_111755201	3300005458	Corn Rhizosphere	VYCGQNDDERMATKIKMMKLLTETDATKEVDRVPPKPALFLMRTRAFQPSLPKRRLPIRIYPGDNDKPAPVQIIFLKPDQKA*
Ga0068867_1010408771	3300005459	Miscanthus Rhizosphere	MATKIKMMKLLTEMDATREVDRVPPKPALFMMRTRAFQPALPKRRLPIRIYPGENVRPTPVQIIFLKPDQKA*
Ga0070679_1001846722	3300005530	Corn Rhizosphere	MATKIKMMKFLTESDAAKEIDRVPPKPALFLMQMRTRSFQPALPKRRLPIRIYPGDSEPAAPVQIIFLKPAPKA*
Ga0070679_1021193821	3300005530	Corn Rhizosphere	MATKIKMMKLLTETDATKEIDRMPPKPALFMMRTRTFQPALPKRRLPIRIYPGEHDRPAPVQIIFLKPDQQA*
Ga0070684_1001956431	3300005535	Corn Rhizosphere	KLLTEVEATKEVDRVPPKPALFLMRQRAFQPTLPKRRLPVRIYPGDLDKPAPVQIIFLKPDQKA*
Ga0068853_1002769172	3300005539	Corn Rhizosphere	MSPLTIAGFPLSTTYLNGTFTANKYARTKRMATKIKMMKLLTETDASKEVDRVPPKPALFMMRTRAFQPSLPKRRLPIRIYPGENSKPTPVQIIFLKPDQKA*
Ga0068855_1000489772	3300005563	Corn Rhizosphere	MATKIKMMKLLTETDATREIDRLPPKPALFLMRTRAFQPALPKRRLPIRIYPGEHDQPAPVQIIFLKPDQQA*
Ga0068855_1001037973	3300005563	Corn Rhizosphere	MATKIKMMKLLTETDATKEMDRVPPKPALFLMRTRAFQPALPKRRLPIRIYPGENTEPAPVQIIFLKPEPKA*
Ga0068855_1002682572	3300005563	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRMPPKPALFLMRSRAFQPALPKRRLPIRIYPGDNAQPTPVQIIFLKPDQKA*
Ga0068857_1013818382	3300005577	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRLPPKPALFLMRTRAFQPALPKRRLPIRIYPGDNAQPTPVQIIFLKPDQKA*
Ga0068856_1023413782	3300005614	Corn Rhizosphere	MATKIKMMKLLTEVDATKEVDRVPPKPALFMMRTRAFQPTLPKRRLPIRIYPGDLDKPAPVQIIFLK
Ga0068851_102148561	3300005834	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRVPPKPALFLMRTRTFQPALPKRRLPIRIYPGDNAQPVPVQIVFLKPDQKA*
Ga0079222_119086311	3300006755	Agricultural Soil	MLARNCCRKSLVQWHVNCGENDTTERMATKIKMLKLLQEADALAELDRRPPKPALYMMHIRPRNHQPSLPKRKLPFRIEPEDYQDPVPVKIIFLKPEPKQ*
Ga0079221_103198932	3300006804	Agricultural Soil	MATKIKMLKLLTEAEAHAEVDKAPPKPALCLMQIRPRAYQPTLPKRKLPIRIYPEDSMPPEPVRIIFLKPGNKA*
Ga0105240_103733032	3300009093	Corn Rhizosphere	MATKIKMMKLLTETDANREVDRVPPKPALFLMRTRAFQPALPKRRLPIRIHPGDNAEPAPVQIIFLKPASEA*
Ga0105240_106600692	3300009093	Corn Rhizosphere	MATKIKMMKLLTETDATREIDRLPPKPALFLMRTRAFQPALPKRRLPIRIYPGEHDQPAPVQIIFLKSDQQA*
Ga0105241_101557142	3300009174	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRMPPKPALFLMRTRAFQPALPKRRLPIRIYPGDNAQPTPVQIIFLK
Ga0105242_106853002	3300009176	Miscanthus Rhizosphere	ERMATKIKMMKLLTETDASIEVDRVPPKPALFLMRTRAFQPALPKRRLPIRIYPGENVEPTPVQIIFLKSDQQA*
Ga0105242_116984132	3300009176	Miscanthus Rhizosphere	MATKIKMMKLLTEMDASREVDRVPPKPALFLMRTRAFQPTLPKRRLPIRIYPGDNVQPTPVQIIFLKPDQKA*
Ga0126373_104689091	3300010048	Tropical Forest Soil	VNCGQNDTTERMATKIKMLKLLQEADALAELDRRPPKPALYMMHIRPRNHQPTLPKRKLPFRIDPEDYQDPVPVKIIFLKPEPKS*
Ga0126373_131501541	3300010048	Tropical Forest Soil	MATKIKMLKLLQEADALDEMDRRPPKPALYMMQMRARNFQANLPRRRLPIRIDPEDYTLPKPVPIILLKPEPKD*
Ga0126376_132286241	3300010359	Tropical Forest Soil	MATKIKMLKLLQEADAMAELDRRPPKPALYMMHIRPRNHQPSLPKRKLPFRIEPEDYQDPVPVKIIFLKSDSKE*
Ga0126378_115822552	3300010361	Tropical Forest Soil	MATKIKMLKLLQEADALAEIDRRPPKPALYMMQMRARNFNASLPRRRLPIRINPEDYTLPRPVPIILLKP
Ga0134125_103713982	3300010371	Terrestrial Soil	MATKIKMMKLLTEVDATKEVDRLPPKPALFMMRARAFQPSLPKRRLPIRIYPGDLDKAAPVQIIFLKPDQQA*
Ga0134125_106358542	3300010371	Terrestrial Soil	ERMATKIKMLKLLMEADARAEIDKCPPKPALYMIQMRPRAFQPSLPKRRLPIRIHPEDSSPAAPVPIIFLRPANKA*
Ga0134125_108751692	3300010371	Terrestrial Soil	MATKIKMMKLLTETDASKEVDRVPPKPALFMMRTRAFQPSLPRRRLPIRIYPGEDSKPTPVQIIFLKPDQKA*
Ga0134125_110373132	3300010371	Terrestrial Soil	MATKIKMMKLLTEADANKEVDRVPPKPALFMMQRSRTFQPALPKRRLPIRIYPGDNVQPEPVQIIFLKPEPKA*
Ga0134125_123796451	3300010371	Terrestrial Soil	MATKIKMMKLLTEADANKEVDRVPPKPALFMMQRTRTFQPALPKRRLPIRIYPGDNAQPEQVRIIFLKPEPKA*
Ga0134128_100072367	3300010373	Terrestrial Soil	MAGFARMATKLKMIKLLMEADAQAEVDRLPPKPALYLMQMRTRTFKPSLPRRRLPIKVNPRDFSQPVPVPIHFAKKA*
Ga0134128_100704464	3300010373	Terrestrial Soil	MATKIKMMKLLTEVDATKEVDRVPPKPALFMMRTRAFQPTLPKRRLPIRIYPGDQDKPAPVQIIFLKSL*
Ga0126381_1000946973	3300010376	Tropical Forest Soil	MATKIKMLKLLQEADALDEMDRRPPKPALYMMQMRARNFQANLPRRRLPIRIDPEDYSLPRPVPIILLKPEPKG*
Ga0126381_1004021501	3300010376	Tropical Forest Soil	MATKIKMLKLLQEADALAEIDRRPPKPALYMMQMRARNFNASLPRRRLPIRTNPADYTLPRPVPIILLNPE
Ga0126381_1020624191	3300010376	Tropical Forest Soil	MATKIKMLKLLQEAEALAELDRRPPKPALYMMHIRPRNHQPSLPKRKLPFRIDPEDYTEPVPVKIILLKPDEK*
Ga0134126_100137007	3300010396	Terrestrial Soil	MATKIKMMKLITETDAHAAIDKCPPKPALYMMQMRTRSFQPALPKRRLPIRIHPEDTAKETPVQIIFLKPENKA*
Ga0134126_113009941	3300010396	Terrestrial Soil	MATKIKMLKLLQEADAMAEIDRRPPKPALYMMHIRPRNHQPSLPKRKLPFRIDPEDYAEPVPVKIVLLKTDEK*
Ga0134126_113734422	3300010396	Terrestrial Soil	MATKIKMMKLLTETDATKEMDRVPPKPALFLMRTRAFQPALPKRRLPIRIYPGDLDKPAPVQIIFLKPDQKA*
Ga0150984_1085168392	3300012469	Avena Fatua Rhizosphere	MATKIKMMKLLTEMDASREVDRVPPKPALFLMRTRAFQPTLPRRRLPIRIYPGENVQPTPVQIIFLKPDQKA*
Ga0137416_106506422	3300012927	Vadose Zone Soil	LTEADALTEVDRCPPKPALYLMQMRPRTFQPSLPRRKLPIRINPEDSLSTPVQIIFLKPENKV*
Ga0137404_102056541	3300012929	Vadose Zone Soil	MARELRADVRIERMATKIKMMKLLTEADALAEIDRVPPKPALFLMQMRTRMFQPSLPRRKLPIRIYPGDYSEPAPVQIIFLKPAAKA*
Ga0164301_116550032	3300012960	Soil	MATKIKMMKFLTEADANKEIDRVPPKPALFMMHMRTRSFQPALPKHRLPIRIYPGDTAEPVPVQIIFLKPEPKA*
Ga0126369_131093462	3300012971	Tropical Forest Soil	MATKIKMLKLLQEADALAELDRRPPKPALYMMHIRPRNHQPSLPKRKLPFRIEPEDYQDPVPVKIIFLNPDSK*
Ga0157370_105469442	3300013104	Corn Rhizosphere	MMKFLTEAEANKEIDRVPPKPALFMMHLRTRSFQPALPKRRLPIRIYPGEHDQPAPVQIIFLKPDQKA*
Ga0157369_104669552	3300013105	Corn Rhizosphere	MARLLRTKWHERMATKIKMMKLLTEVDATKEVDRVPPKPALFMMRTRAFQPSLPKRRLPIRIYPGDLDKPAPVQIIFLKPDQKA*
Ga0157374_103835163	3300013296	Miscanthus Rhizosphere	NFSANKIVTQRMETRIKILIFFTGTDDNREVDRVPPKPALFLMRTRAFQPALPKRRLPIRIYPGENVEPTPVQIIFLTPDQQA*
Ga0157374_111192541	3300013296	Miscanthus Rhizosphere	TKIKMMKLLTETDASKEVDRLPPRPALFLMRTRAFQPALPKRRLPVRIYPGDNTEPTPVQIIFLKPGQKA*
Ga0157376_105047152	3300014969	Miscanthus Rhizosphere	DAFREVDRVPPKPALFLMRTRAFQPTLPKRRLPIRIYPGDNVQPTPVQIIFLKPDQQA*
Ga0187783_112474201	3300017970	Tropical Peatland	QMRPESRFYWHVTCGQNRRTERMATKIKMLKLLQEAEAAAEIDRRPPRPALYMMHIRPRNHQPIPPKRKLPFQIDPEDYSHPAPVKIILLKPGSKK
Ga0193718_100017913	3300019999	Soil	MARELRADVTKKRMATKIKMMKLLTEADALAEIDRVPPKPALFLMQMRSRLFQPSLPRRRLPIRIYPGDSSEPAPVQIIFLKPAAKA
Ga0179590_11426711	3300020140	Vadose Zone Soil	MARELRADVRIERMATKIKMMKLLTEADALAEIDRVPPKPALFLMQMRTRMFQPSLPRRKLPIRIYPGDYSEPAPVQIIFLKPAAKA
Ga0210406_108317702	3300021168	Soil	MATKIKMLKLLQEADAMAEIDRRPPRPALYMIQMRPRTFQPSLPKRKLPIRIDPEDYALPVPVKIILLKP
Ga0210389_104410942	3300021404	Soil	MATKIKMLKLLMEAEANAEIDRRPPKPALFLMNMRPRNFQPALPKRRLPIRIQPEDSGEPVPVKIILLKPDAKA
Ga0210387_110307291	3300021405	Soil	MATKIKMLKLLQEADALAEIDRRPPRPALYMMQMRSRTFQPSLPKRKLPFRIDPEDYGLPIPVKIVLLKPDSKD
Ga0210410_105652692	3300021479	Soil	MARELRTDVRKKRMATKIKMMKLLTEADALAEIDRVPPKPALFLMQMRTRMFQPSLPRRRLPIRIYPGDSSEPVPVQIIFLKPAAKA
Ga0126371_105831001	3300021560	Tropical Forest Soil	MATKIKMLKLLQEADALDEMDRRPPKPALYMMQMRARNFQANLPRRRLPIRIDPEDYSLPRPVPIILLKPEPKG
Ga0126371_107838472	3300021560	Tropical Forest Soil	MATKLKMIKLLMEADAQAEIDRVPPKPALYFMQMRPRTFKPSLPRRRLPIKVNPKDFSEPVPVQIHFAKTHSKA
Ga0247693_10240311	3300024181	Soil	MATKIKMLKLLMEADARAEIDKCPPKPALYMIQMRPRAFQPSLPKRRLPIRINPEDSSPAAPVPIIFLRPANKA
Ga0247688_10980121	3300024186	Soil	MATKIKMLKFLTESDAAKEIDRVPPRPALFLMQMRTRSFQPALPKRRLPIRIYPGDDAKPAPVQIIFLKPASKA
Ga0179591_11816693	3300024347	Vadose Zone Soil	MATKIKMMKLLTEADALAEIDRVPPKPALFLMQMRTRMFQPSLPRRKLPIRIYPGDYSEPAPVQIIFLKPAAKA
Ga0207656_104062801	3300025321	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRVPPKPALFLMRTRTFQPALPKRRLPIRIYPGDNAQPVPVQIVFLKPDQKA
Ga0207705_112657932	3300025909	Corn Rhizosphere	MATKIKMMKLLTEVEATKEVDRVPPKPALFLMRQRAFQPTLPKRRLPVRIYPGDLDKPAPVQIIFLKPDQKA
Ga0207707_100540162	3300025912	Corn Rhizosphere	MATKIKMMKLLTETDATKEIDRMPPKPALFMMRTRTFQPALPKRRLPIRIYPGEHDRPALVQIIFLKPDQQA
Ga0207707_101582682	3300025912	Corn Rhizosphere	MTKRMATKIKMMKLLTEADANKEVDRVPPKPALFMMQRSRTFQPALPKRRLPIRIYPGDNVQPEPVQIIFLKPEPKA
Ga0207707_108541772	3300025912	Corn Rhizosphere	MATKIKMMKLLTETDATKEVDRVPPKPALFLMRTRAFQPSLPKRRLPIRIYPGDNDKPAPVQIIFLKPDQKA
Ga0207695_100662503	3300025913	Corn Rhizosphere	MATKIKMLKLLMEADARAEIDKCPPKPALYMIQMRPRAFQPSLPKRRLPIRIHPEDSSPAAPVPIIFLRPANKA
Ga0207695_105284702	3300025913	Corn Rhizosphere	MATKIKMMKLLTETDATREIDRLPPKPALFLMRTRAFQPALPKRRLPIRIYPGEHDQPAPVQIIFLKSDQQA
Ga0207694_100358172	3300025924	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRMPPKPALFLMRSRAFQPALPKRRLPIRIYPGDNAQPTPVQIIFLKPDQKA
Ga0207694_111400262	3300025924	Corn Rhizosphere	MMKLLTEVEATKEVDRVPPKPALFLMRQRAFQPTLPKRRLPVRIYPGDLDKPAPVQIIFLKPDQKA
Ga0207700_107642841	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MATKIKMMKFLTEAEATKEIDRVPPRPALFMMHLRTRSFQPALPKRRLPFRIYPGDNAQPVPVQIIFLKPEPKA
Ga0207664_100104396	3300025929	Agricultural Soil	MATKIKMMKFLTEAEATKEIDRVPPKPALFMMNLRTRSFQPSLPKRRLPIRIYPGDISKPVPVPIIFLKPEPKA
Ga0207686_118379641	3300025934	Miscanthus Rhizosphere	MATKIKMMKLLTEMDASREVDRVPPKPALFLMRTRAFQPTLPKRRLPIRIYPGDNVQPTPVQII
Ga0207670_118065272	3300025936	Switchgrass Rhizosphere	MATKIKMMKLLTEMDATREVDRVPPKPALFLMRTRAFQPTLPKRRLPIRIYPGENEKPAPVQIIFLKPDQKA
Ga0207667_100834243	3300025949	Corn Rhizosphere	MATKIKMMKLLTETDATKEMDRVPPKPALFLMRTRAFQPALPKRRLPIRIYPGENTEPAPVQIIFLKPEPKA
Ga0207667_100862031	3300025949	Corn Rhizosphere	MATKIKMMKLLTETDATREIDRLPPKPALFLMRTRAFQPALPKRRLPIRIYPGEHDQPAPVQIIFLKPDQQ
Ga0207639_102007802	3300026041	Corn Rhizosphere	MSPLTIAGFPLSTTYLNGTFTANKYARTKRMATKIKMMKLLTETDASKEVDRVPPKPALFMMRTRAFQPSLPKRRLPIRIYPGENSKPTPVQIIFLKPDQKA
Ga0207702_100394002	3300026078	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRMPPKPALFLMRSRAFQPALPKRRLPIRIYPGDNAQPTPVQIIFLKPEPKA
Ga0207702_106117372	3300026078	Corn Rhizosphere	SSNGTFTANNSPDERMATKIKMMKLLTETDASKEVDRLPPKPALFLMRTRAFQPALPKRRLPVRIYPGDNAQPTPVQIIFLKPDQKA
Ga0207648_111013702	3300026089	Miscanthus Rhizosphere	MATKIKMMKLLTEMDATREVDRVPPKPALFMMRTRAFQPALPKRRLPIRIYPGENVRPTPVQIIFLKPDQKA
Ga0207676_122518082	3300026095	Switchgrass Rhizosphere	DATKEIDRVPPKPALFMMHLRTRSFQPALPKRRVPVRIYPGDTAQPVPVQIIFLKPEPKA
Ga0207674_103463622	3300026116	Corn Rhizosphere	MATKIKMMKLLTETDASKEVDRLPPKPALFLMRTRAFQPALPKRRLPIRIYPGDNAQPTPVQIIFLKPDQKA
Ga0209580_106548861	3300027842	Surface Soil	MATKIKMLKLLQEADALAEIDRRPPKPALYMMQMRSRNFQANLPRRRLPVRIDPEDYSLPRPVPIILLKPEPKG
Ga0137415_105228731	3300028536	Vadose Zone Soil	ATKIKMMKLLTEADALTEVDRCPPKPALYLMQMRPRTFQPSLPRRKLPIRINPEDSLSTPVQIIFLKPENKV
Ga0265334_102521481	3300028573	Rhizosphere	MATKIKMMKLLTESDAAKEMDRVPPKPAIFLIQMRPRSFQPALPRRRLPIRIYPGDTAQPVPVQIIFLKPEPKA
Ga0265338_1000231525	3300028800	Rhizosphere	MATKIKMMKLLTESDAAKEMDRVPPKPALFMMQMRTRSFQPALPKRRLPVRIYPGDTAQPTPVQIIFLKPEPKA
Ga0170822_161070712	3300031122	Forest Soil	MATKIKMMKLLTEADANREIDRVPPKPALFMMQRPRTFQPALPKRRLPFRIYPGENTEPFTVHIIFLNPEPKA
Ga0170823_114904201	3300031128	Forest Soil	ERMATKIKMLKLLQEADAMAEIDRRPPKPALYMIQMRPRNFQPSLPKRRLPIQIDPRDYELPSPVRIILLKPGSEV
Ga0265328_101287101	3300031239	Rhizosphere	MATKIKMMKLLTESDAAKEMDRVPPKPALFMMQMRTRSFQPALPKRRLPIRIYPGDTAQPVPVQIIFLKPEPKA
Ga0170820_145415202	3300031446	Forest Soil	MATKIKMLKLLMEAEANAEIDRRPPKPALFLMNMRTRNFQPALPKRRLPIRIQPEDSGEPVPVKIIFLKPDAKA
Ga0170818_1061051202	3300031474	Forest Soil	MATKIKMLKLLMEAEANAEIDRRPPKPALFLMHMRTRNFQPALPKRRLPIRIHPEDSAEPTPVKIILL
Ga0310686_1103919111	3300031708	Soil	MATKIKMLKLLQEADAMAEIDRRPPKPALYMMQIRPRNYQPSLPKRRLPVQTEPEDYLRPLPVKIVFLKPGSEA
Ga0302321_1001275912	3300031726	Fen	MATKIKMMKLLTEAEANREMDRVPLKPALFLMNMRPRSFKPALPKRRLPIRIYPEDSAQPVPVQIVFLKPTSLA
Ga0307479_107038152	3300031962	Hardwood Forest Soil	MATKIKMLKLIQEADALAEMDRRPPKPALYMMQMRARNFQANLPRRRLPIRIDPRDYTLPKPVPIILLKPEPKD
Ga0335078_106865072	3300032805	Soil	MATKIKMLKLLQEADALAELDQRPSRPALYMMQMRPRTFQPSLPRRRLPVRIDPRDYSFPTPVQIILLKSKRKA
Ga0335083_103101902	3300032954	Soil	MATKIKMMKLITEADAHAEMDKCPPKPALYMMQMRTRSFQPSLPKRRLPIRIHPEDSGKETPVQIIFLKPESKA
Ga0335073_109943792	3300033134	Soil	MATKIKMLKLLQEADALAEVDRRPPKPAFYMVPMRTRNFQPALPKRRLPFRIDPRDQSDPVPVQIIFLKPLSKA
Ga0310811_101814173	3300033475	Soil	MATKIKMMKLLTESDANKEVDRVPPKPALFMMQRTRAFQPALPKRRLPIRIYPGDSAQPKPVQIIFLKPAPKA
Ga0310811_110401442	3300033475	Soil	MATKIKMMKLLTESDANKEVDRVPPKPALFMMQRTRAFQPALPKRRLPIRIYPGDSAQPKPVQIIFLKPEPKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084060

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences